BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53035.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923842 jgi|Araly1|923842|scaffold_105123.1 758 0.0
Ahg929330 jgi|Araly1|929330|scaffold_301787.1 448 4e-125
> Ahg923842 jgi|Araly1|923842|scaffold_105123.1
Length=494
Score = 758 bits (410), Expect = 0.0
Identities = 466/492 (95%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 215 TCTCTTCCTTTA--TTCA-TCAATGACTACAGCAATATCGATGAATCCATCTTTGTTTCG 271
|||||||||||| |||| || ||||||||| || | |||||||||||||||| ||||||
Sbjct 1 TCTCTTCCTTTATTTTCATTC-ATGACTACATCATTTTCGATGAATCCATCTTCGTTTCG 59
Query 272 AGTAATCTGTATACTCCATTCGATAATTGCGCTTACTAGTGGAACCTTAATGATGTTCTA 331
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 60 AGTAATCTGTATACTCCATTCGATAATCGCGCTTACTAGTGGAACCCTAATGATGTTCTA 119
Query 332 CACAGAGAAAGCTTCAATCTTTGGACCAGGAAGTGAGATTGCTAGCAAACTAAAAGGATC 391
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CACAGAGAAAGCTTCAATCTTTGGACCAGGAAGTGAGATTGCAAGCAAACTAAAAGGATC 179
Query 392 AACACCACACGATGAACTACTCATACAGATTTCTCAGTCATTCTCTGGTTTGCTTCTGTT 451
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 AACGCCACATGATGAACTACTCATACAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTT 239
Query 452 TGCAATTGGTTTGGTACTGTTCATGGTTTCGTTTGTGAAAGACAAAGAGTTTCATAGCTT 511
||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 240 TGCAATTGGTTTGGTACTGTTCATGGTGTCCTTTGTGAAAGACAGAGAGTTTCATAGCTT 299
Query 512 CTTCGCTGGTGGGTCCGTGATTCTGTATGTGTTAATGGCTATGTGGAGGGTTTTGTTCGA 571
||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCGCTACTGGTTCGGTGATTCTTTATGTGTTAATGGCTATGTGGAGGGTTTTGTTCGA 359
Query 572 GTGGAAAATTGAAGATCTTGCTTATGAATGGCCTAAACAAGCTCTTGGAGACATTGCTTT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGGAAAATTGAAGATCTTGCTTATGAATGGCCTAAACAAGCTCTTGGAGACATTGCTTT 419
Query 632 GGCTATTTCTTGGGTTTTCTTTCTTGTTTATTCTTGGAGAGAGAAGTATGATTGATG-T- 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 GGCTATTTCTTGGGTTTTCTTTCTTGTTTATTCTTGGAGAGAGAAGTATGATTGATGATG 479
Query 690 TTTT-GAT-TTT 699
|||| ||| |||
Sbjct 480 TTTTTGATCTTT 491
> Ahg929330 jgi|Araly1|929330|scaffold_301787.1
Length=477
Score = 448 bits (242), Expect = 4e-125
Identities = 394/466 (85%), Gaps = 15/466 (3%)
Strand=Plus/Plus
Query 250 CGATGAA-TC-CATCTTTGTTTCGAGTAATCTGTATACTCCATTCGATAATTGCGCTTAC 307
||||||| || |||| | || || ||||||||||| ||||||||||| || || |||||
Sbjct 19 CGATGAATTCACATC--TCTTCCGTGTAATCTGTATGCTCCATTCGATTATCGCACTTAC 76
Query 308 TAGTGGAACCTTAATGATGTTCTACACAGAGAAAGCTTCAATCTTTGGACCA-GGAAGTG 366
||||||||| | |||||||||||||||||||||||||| ||||||||| || || ||||
Sbjct 77 AAGTGGAACCCTGATGATGTTCTACACAGAGAAAGCTTCGATCTTTGGA-CATGGTAGTG 135
Query 367 AGATTGCTAGCAAACTAAAAGGATCAACACCACACGATGAACTA-CTCATACAGATTTCT 425
| || || | ||| || |||||||||||||| ||||| || | | || || |||||||||
Sbjct 136 ATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGC-AGCTTATTCAGATTTCT 194
Query 426 CAGTCATTCTCTGGTTTGCTTCTGTTTGCAATTGGTTTGGTACTGTTCATGGTTTCGTTT 485
||||||||||||||||||||||| ||||| || || |||||||| |||||||| ||||||
Sbjct 195 CAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTACTTTTCATGGTGTCGTTT 254
Query 486 GTGAAAGACAAAGAGTTTCATAGCTTCTTCGCTGGTGGGTCCGTGATTCTGTATGTG-TT 544
|||||||||| |||||||||||||||||| || | ||| || |||||||| ||| || ||
Sbjct 255 GTGAAAGACAGAGAGTTTCATAGCTTCTTTGCCGCTGGTTCTGTGATTCTCTATATGCTT 314
Query 545 AATGGCTATGTGGAGGGTTTTGTTCGAGTGGAAAATTGAAGATCTTGCTTATGAATGGCC 604
| ||||| | ||||| ||| |||| |||||||| |||||||||||||||| |||||| ||
Sbjct 315 A-TGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTTGCTTTTGAATGTCC 373
Query 605 TAAACAAGCTCTTGGAGACATTGCTTTGGCTATTTCTTGGGTTTTCTTTCTTGTTTATTC 664
|| ||||| ||||||||||||||||| ||| | || ||||||||||| || |||||| |
Sbjct 374 CAAGCAAGCCCTTGGAGACATTGCTTTAGCTGTCTCATGGGTTTTCTTCCTCGTTTATAC 433
Query 665 TTGGAGAGAGAAGTATGATTGAT-G-T-TTTTGATTTTCTCTTTTC 707
|||||||||||||||||||||| | | ||||| |||| | |||||
Sbjct 434 ATGGAGAGAGAAGTATGATTGATTGATGTTTTGTTTTT-T-TTTTC 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5