BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53040.1
Length=2174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923843 jgi|Araly1|923843|scaffold_105124.1 2564 0.0
> Ahg923843 jgi|Araly1|923843|scaffold_105124.1
Length=1658
Score = 2564 bits (1388), Expect = 0.0
Identities = 1575/1665 (95%), Gaps = 14/1665 (1%)
Strand=Plus/Plus
Query 274 TCTTCTTCTTGTTTCTTCACAATGCTCACTTCTAATTCTAAAGAGAAGGAAAGGTCTCTC 333
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TCTTCTTCTTGTTTCTTCACAATGCTCACTTCTAATTCTAAAGACAAGGAAAGGTCTCTC 60
Query 334 TCCTTCTTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTTCTACTTCTCAGC 393
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 61 TCCTTCTTATGTTGCTGGTACTTAGGTCGTCGACGAGTTGCTATGCTGCTCCTTCTTAGC 120
Query 394 CTTGCTTTTGTTGTCTTTGTGTTGGGTTCCTACACTATCAACAAAGAGAGCAATAGTCCA 453
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTTGCATTTGTTGTCTTTGTCTTGGGTTCTTACACTATCAACAAAGAGAGCAATAGTCCA 180
Query 454 AATATTCATCAGAGTATTGAGACGATGGATTTTGGAAGCAACCAAACACCGATAAGTAGA 513
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACATTCATCAGAGTATTGAGACGATGGATTTTGGAAGCAACCAAACACCGATAAGTAGA 240
Query 514 GAATTGACTTCTTTCTATACAAAGGAGTCTGATAATGATCATGTTAGAGATCCTTTTTTG 573
||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||| |
Sbjct 241 GAATTGACTTCTTTCTATACACAGAACTCTGATAATGATCATATTAGAGATTCTTTTAAG 300
Query 574 TGGAATGGCATTGGAGGAAGTGATGTAGACGTCAACCATCCTCCTCCATTCTTACCTTCA 633
|||||||||||||||||||||||||||||||||||||| ||| ||| | | ||
Sbjct 301 TGGAATGGCATTGGAGGAAGTGATGTAGACGTCAACCA------TCC-TTC-T--C--CA 348
Query 634 TGGCATCACCATCCGTGTGATAGTTTTTCTTTTCCTCCTCCTCCACCACCTGGAATGAGA 693
| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 349 TCGCATCACCATCCGTGTGATAGTTTTTCATTTCCTCCTCCTCCACCACCTGAAATGAGA 408
Query 694 AGGCCTGGTCCACGCCCTTGTCCGGTATGCTACCTACCTCCAGAAGAGGCCTTAGCACAT 753
||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 409 AGGCCTGGTCCACGCCCGTGTCCGGTATGCTATCTACCTCCAGAAGAGGCCTCAGCGCAT 468
Query 754 ATGCCAAAGTATCCATTTGAATCTCCCTTGCTCAAGAATTTGACATATATACGTGAAGAG 813
||||||||||||| ||||||||||||| ||||||||||| |||||||||| | |||||||
Sbjct 469 ATGCCAAAGTATCGATTTGAATCTCCCGTGCTCAAGAATCTGACATATATCCATGAAGAG 528
Query 814 AGTCCTGTAAAACCTGAAGAAAGTGAAGGAGGCTCTGAATTCGGAGGTTATCCTTCTCTC 873
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 529 AGTCCTGTAAAACCTGAAGAAAGTCAAGGAGGCTCTGACTTCGGAGGTTATCCTTCTCTT 588
Query 874 GAGCATAGGACTAACTCTTTTGACATAAAAGAGTCCATGACAGTGCATTGCGGGTTTATT 933
||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 589 GAGCATAGGGCTAACTCCTTTGACATAAAAGAGTCCATGACAGTGCATTGCGGATTTATT 648
Query 934 AAAGGAACAAAACCGGGCCACCAAACTGGATTTGACATCGATGAGGATATCCTTCATGAG 993
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 649 AAAGGAACAAAACCGGGTCACCAAACTGGATTTGACATTGATGAGGATATCCTTCATGAG 708
Query 994 TTGGACCAGTCCCATGATGTGATTGTCGCGTCAGCGATATTTGGAAAGTATGACATAATT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TTGGACCAGTCCCATGATGTGATTGTCGCGTCAGCGATATTTGGAAAGTATGACATAATT 768
Query 1054 CAAGAACCGGTGAACATCAGTGAAATGGCGAGGAAGAACATCCCATTCTACATGTTTGTT 1113
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CAAGAACCAGTGAACATCAGTGAAATGGCGAGGAAGAACATCCCATTCTACATGTTTGTT 828
Query 1114 GATGAAGAAACACATTTATACCTTAAGAACACGTCGAGTTATACAGACGATAACAAGAGA 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GATGAAGAAACACATTTATACCTTAAGAACACGTCGAGTTATACAGACGATAACAAGAGA 888
Query 1174 GTGGGATTGTGGAGGATCATTGTTGTACATAATGTCCCTTATACCGATGCACGGCGTAAT 1233
|| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 889 GTAGGATTGTGGAGGATCATTGTTGTACATAGTGTCCCTTATACAGATGCACGGCGTAAT 948
Query 1234 GGAAAGGTTCCGAAGCTTTTATTGCATAGATTATTCCCAAATGTCCGGTACTCTATATGG 1293
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GGAAAGGTTCCGAAGCTTCTATTGCATAGATTATTCCCAAATGTCCGGTACTCTATATGG 1008
Query 1294 GTTGATGCAAAGCTCCAGCTTGTTGTAGATCCATATCAAATCCTTGAAAGGTTCTTGTGG 1353
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1009 GTTGATGCAAAGCTCCAGCTTGTTGTAGATCCATATCAAATCCTTGAGAGGTTCTTGTGG 1068
Query 1354 AGAACGAATTCTAGTTTTGCAATCTCGAGACATTACCGACGTTTTGATGTGTTTGTAGAG 1413
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AGAACGAATTCTAGTTTCGCAATCTCGAGACATTACCGACGTTTTGATGTGTTTGTAGAG 1128
Query 1414 GCTGAAGCGAATAAGGCCGCAAGAAAGTACGACAATGCCTCAATAGATTACCAAGTAGAG 1473
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1129 GCTGAGGCGAATAAGGCTGCAAGAAAGTACGACAATGCCTCAATTGATTACCAGGTAGAG 1188
Query 1474 TTCTACAAGAAGGAAGGTTTAACACCTTATACGGAGGCTAAGCTTCCAATAACAAGTGAT 1533
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1189 TTCTACAAGAAGGAAGGTTTAACACCTTATACCGAGGCTAAGCTTCCAATAACTAGTGAT 1248
Query 1534 GTCCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACATGT 1593
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1249 GTTCCTGAAGGTTGTACCATCATAAGAGAACACATACCGATCACAAACCTTTTCACGTGT 1308
Query 1594 GTATGGTTCAACGAGGTAGATCGGTTTACTTCAAGAGATCAGCTAAGCTTTGCAATTGCG 1653
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1309 GTTTGGTTCAACGAGGTAGACCGGTTTACTTCCAGAGATCAGCTAAGCTTTGCAATTGCA 1368
Query 1654 AGAGACAAAATAAGAGAGAAAGTTGATTGGAGCATCAATATGTTCTTGGACTGTGAAAGA 1713
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1369 AGAGACAAGATAAGAGAGAAAGTTGATTGGAACATCAATATGTTCTTAGACTGTGAAAGA 1428
Query 1714 CGCAACTTTGTGAAACAGGTATATCATAGAGACGTTTTGCTGACCATGAAACCTCCTCGA 1773
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1429 CGCAACTTTGTGAAACAGGTATATCATAGAGACATTTTGATGAACATGAAACCTCCTCGA 1488
Query 1774 GCTTCTTCTAG-AGTTCTTCCCGAGCCACTGGTTTTACCACGTGGAAGATTAGCCGGTGG 1832
||||||||||| | || ||| |||||||| || ||| |||||||||||||||| |||||
Sbjct 1489 GCTTCTTCTAGGATTT-TTCTCGAGCCACCGGCTTTGCCACGTGGAAGATTAGTTGGTGG 1547
Query 1833 TAGAGCCACGCCGGGTAAGAAGACTCCGGGACAACGCGGGAAAAGGCGTCACCGGAAAGT 1892
||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1548 TAGAGCCACAACGGGGAAGAAGACTCCGGGACAACGTGGAAAAAGGCGTCACCGGAAAGT 1607
Query 1893 TTCAGCCGGTGGCAGAAACATGTGATAGAGAGAGAGATTCCACAC 1937
|||||||||||| ||||||||| ||||||||||||| ||| ||||
Sbjct 1608 TTCAGCCGGTGGAAGAAACATGAGATAGAGAGAGAGCTTCTACAC 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81817846260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5