BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53060.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740 1086 0.0
> Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740
Length=729
Score = 1086 bits (588), Expect = 0.0
Identities = 685/732 (94%), Gaps = 6/732 (1%)
Strand=Plus/Plus
Query 1 ATGACATTCCATGGAGACGCCGAGTACGCTTCAGAGCCTGATGGTATGAGCAAGTCAGGA 60
|||||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 1 ATGACATTCCATGGTGACGCCGAGTATGCTCCAGAGCCCGATGGTATGAGCAAGTCAGGA 60
Query 61 GCAATTGGATTGAGCCGTGACAATGTCCCATTCTCTCATGGTCGAGCCATTTTCATCAAT 120
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GCTCTTGGATTGAGCCGTGACAATGTCCCTTTCTCTCATGGTCGAGCCATTTTCATCAAT 120
Query 121 CCAGTCCCTTTTAAGCCTAGTTCTACTTCTTCCTCTGTCTACTCTTTCAAAACTTCTTTC 180
||| ||||||| || |||| | || |||||||||||||||||||||||||||||||||||
Sbjct 121 CCAATCCCTTTCAAACCTAATGCTTCTTCTTCCTCTGTCTACTCTTTCAAAACTTCTTTC 180
Query 181 TA-TTTCGTCATTAGTCCTCGCCCGAAAAATCCTAATCCCGGTCATGGCCTCGCCTTTAT 239
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 -ACTTTCGTCATTAGTCCTCGCCGGAAAAATCCTAATCCCGGTCATGGCCTCGCCTTTAT 239
Query 240 CATCGTCCCCAACGATAGAAACGACTCCGCTTCTGGTTTAGGCTATCTCAGTCTTGTGAA 299
||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 240 TGTCGTCCCCAACGATAAAAACGACTCTGCTTCTGGTTTAGGCTACCTCAGTCTTGTGAA 299
Query 300 CCGGTTTAGCAACGGTAATCCCAAGAACCATCTCTTTGCGGTTGAGTTTGATGTTTTTAA 359
|||||||| ||||||||||||||||||||||||||||||||| || || ||||| |||||
Sbjct 300 CCGGTTTAACAACGGTAATCCCAAGAACCATCTCTTTGCGGTCGAATTCGATGTCTTTAA 359
Query 360 AGACAAGTCTCTTGGCGACATTAACGATAACCATATCGGAATCAACAATAATTCGGTTAA 419
|||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 360 AGACAAGTCTCTTGGCGACATTAACGATAACCATGTTGGAATCAACATTAATTCGGTTAA 419
Query 420 TTCAACGGTATCTAAGAAGGCCGGTTATTGGTA-TCAATCAAAAATCGAAGGAAAAAACC 478
||||||||| |||||||| |||||||||||| | |||||||| || || |||||||| ||
Sbjct 420 TTCAACGGTTTCTAAGAAAGCCGGTTATTGG-ATTCAATCAAGAACCGGAGGAAAAAGCC 478
Query 479 GGTGGTTGTTCAAGGAATTGAAGCTAAGTGGAAACGGATACAGGGCTTGGATTGAGTACG 538
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 479 GGTGGTTGTTCAAGGAATTGAAGCTAAGTGAAAATGGATACAGGGCTTGGATAGAGTACG 538
Query 539 AGAACGGGAAAGTGACAGTCACGATCGGACGTTCACAAGAAAAACCGAAGAGGCCATTGA 598
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 539 AGAACGGGAAAGTGACAGTCACGATCGGACGTTCTCAGGAAAAACCGAAGAGGCCATTGA 598
Query 599 TCGAAGC-ACGAGTCGATCTTTCTAAGGTTTTTCTCGAGAAAATGTATGTCGGTTTTGCC 657
||||||| | ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 599 TCGAAGCGA-GAGTCGATCTTTCTAAGGTTTTTTTCGAGAAAATGTATGCCGGTTTTGCC 657
Query 658 GGTTCAATGGGACGTGGCGTCGAGCGTCACGAGATCTTGGACTGGAGTTTTGAGAACAGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGTTCAATGGGACGTGGCGTCGAGCGTCACGAGATCTTGGACTGGAGTTTTGAGAACAGT 717
Query 718 GCCAAAGACTAA 729
|||||| |||||
Sbjct 718 GCCAAAAACTAA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5