BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53070.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923846 jgi|Araly1|923846|scaffold_105127.1 1338 0.0
Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740 381 5e-105
> Ahg923846 jgi|Araly1|923846|scaffold_105127.1
Length=859
Score = 1338 bits (724), Expect = 0.0
Identities = 804/843 (95%), Gaps = 3/843 (0%)
Strand=Plus/Plus
Query 34 AAAAAATGAAGATCCAAATACTCTGTTTCACCACTCTGTTCTTAGCTATCTTCACCTCTC 93
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 16 AAAATATGAAGATCCAAATACTCTGTTTCACCACTCTGTTCTTAGCTATCTTCACCCCTC 75
Query 94 AAGTCACCACTGCTTACAAATTCAAATTCGATTACTTTGGTAACGGCACCGATCCAATAT 153
||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||
Sbjct 76 AAGTCACCACTGCTTACAAATTCAAATTCGATTACTTTGGTAATGGTACTGATCTAATAT 135
Query 154 CATTCCATGGAGACGCTGAGTATGGTCCTGACACTGATGGCAAGAGCCGGTCCGGAGCCA 213
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 136 CATTCCATGGTGACGCTGAGTATGGTCCTGACACTGATGGCATGAGCCGGTCCGGAGCCA 195
Query 214 TCGCATTGACTCGAGACAACATTCCTTTCTCTCATGGTCGAGCCATTTTCACCACTCCAA 273
|||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 196 TCGCATTGACCCGAGACAACATCCCTTTCTCTCATGGTCGAGCTATTTTAACCACTCCAA 255
Query 274 TCACTTTCAAGCCTAATGCTTCAGCTCTTTACCCTTTTAAAACCTCTTTCACTTTCTCCA 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TCACTTTCAAGCCTAATGCTTCAGCTCTTTACCCTTTTAAAACCTCTTTCACTTTCTCCA 315
Query 334 TTACTCCTAAAACAAACCCTAATCAAGGTCATGGCCTTGCTTTCATCGTCGTCCCAAGTA 393
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 316 TCACTCCTAAAACAAACCCTAATCAAGGTCATGGTCTTGCCTTCATCGTCGTCCCAAGTA 375
Query 394 ACCAAAACGACGCCGGTTCCGGTTTAGGCTATCTCAGTCTTCTGAACCGAACCAATAACG 453
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 376 ACCGAAACGACGCCGGTTCCGGTTTAGGCTATCTCAGTCTTCTGAACCGAACCAACAACG 435
Query 454 GTAATCCTAATAACCACCTCTTTGCCGTTGAGTTCGATGTCTTTCAAGACAAATCTCTTG 513
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 436 GTAATCCTAATAACCACCTTTTTGCCGTTGAATTTGATGTCTTTCAAGACAAATCTCTTG 495
Query 514 GCGACATGAACGATAACCATGTCGGAATCGATATTAATTCGGTTGATTCGGTGGTTTCTG 573
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GCGACGTGAACGATAACCATGTCGGAATCGATATTAATTCGGTTGATTCGGTGGTTTCTG 555
Query 574 TGAAATCCGGTTATTGGGTTATGACAAGAAGCGGTTGGTTATTTAAGGATTTGAAGCTAA 633
|||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| | |
Sbjct 556 TGAAATCCGGTTATTGGGTTATGACAAGAAACGGTTGGTTGTTTAAGGAATTGAAGTTGA 615
Query 634 GTAGTGGAGATAGATACAAGGCTTGGATTGAGTACAACAACAATTATAAAGT-AGTCTCT 692
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 616 GTAGTGGAGATAGATACAAGGCTTGGATTGAGTACAACAATAATTATAAAGTCA-TCTCT 674
Query 693 GTTACGATTGGTTTAGCGCATTTGAAGAAACCGAACCGGCCATTGATTGAAGCAAAATTC 752
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GTTACGATTGGTTTGGCGCATTTGAAGAAACCGAACCGGCCATTGATTGAAGCAAAATTC 734
Query 753 GATCTTTCCAAGGTCATACACGAGGTAATGTATACCGGTTTTGCTGGTTCGATGGGTCGT 812
|||||||||||||| || |||||| |||||||||||||||||| |||||||||||||||
Sbjct 735 GATCTTTCCAAGGTTATTCACGAGCAAATGTATACCGGTTTTGCCGGTTCGATGGGTCGT 794
Query 813 GGTGTCGAGCGTCACGAGATTTGGGACTGGACTTTCCAGAATTAAGAAAACAGGTTTGGT 872
||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||
Sbjct 795 GGTGTCGAGCGTCACGAGATTTGGGACTGGACTTTCCAGAACTAA-AAAACCGGTTCGGT 853
Query 873 TTG 875
|||
Sbjct 854 TTG 856
> Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740
Length=729
Score = 381 bits (206), Expect = 5e-105
Identities = 564/728 (77%), Gaps = 59/728 (8%)
Strand=Plus/Plus
Query 154 CATTCCATGGAGACGCTGAGTATGGTCCTGA-CACTGATGGCAAGAGCCGGTCCGGAGC- 211
|||||||||| ||||| ||||||| ||| || | | ||||| | |||| ||| |||||
Sbjct 5 CATTCCATGGTGACGCCGAGTATGCTCCAGAGC-CCGATGGTATGAGCAAGTCAGGAGCT 63
Query 212 CATCGCATTGA-CTCGAGACAACATTCCTTTCTCTCATGGTCGAGCCATTTTCACCACTC 270
| | | ||||| | || ||||| | |||||||||||||||||||||||||||| || ||
Sbjct 64 C-TTGGATTGAGC-CGTGACAATGTCCCTTTCTCTCATGGTCGAGCCATTTTCATCAATC 121
Query 271 CAATCACTTTCAAGCCTAATGCTTCAGCT-C-T-T-T--ACCCTTTTAAAACCTCTTTCA 324
||||| ||||||| ||||||||||| || | | | | || |||| ||||| |||||||
Sbjct 122 CAATCCCTTTCAAACCTAATGCTTCTTCTTCCTCTGTCTACTCTTTCAAAACTTCTTTCA 181
Query 325 CTTTC-TCCATTACTCCTAA----AACAAACCCTAATCAAGGTCATGGCCTTGC-TTTCA 378
||||| || |||| |||| || ||| ||||||| ||||||||||| || ||| |
Sbjct 182 CTTTCGTC-ATTAGTCCTCGCCGGAA-AAATCCTAATCCCGGTCATGGCCTCGCCTTT-A 238
Query 379 TCGTCGTCCC-AA-G-TAACCAAAACGACGCCGGTTCCGGTTTAGGCTATCTCAGTCTTC 435
| |||||||| || | ||| ||| |||| | | ||| ||||||||||| |||||||||
Sbjct 239 TTGTCGTCCCCAACGATAA--AAA-CGACTCTGCTTCTGGTTTAGGCTACCTCAGTCTTG 295
Query 436 TGAACCGAACCAATAACGGTAATCCTAATAACCACCTCTTTGCCGTTGAGTTCGATGTCT 495
||||||| || ||||||||||| || ||||| |||||||| || || ||||||||||
Sbjct 296 TGAACCGGTTTAACAACGGTAATCCCAAGAACCATCTCTTTGCGGTCGAATTCGATGTCT 355
Query 496 TTCAAGACAAATCTCTTGGCGACATGAACGATAACCATGTCGGAATCGATATTAATTCGG 555
|| ||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||||
Sbjct 356 TTAAAGACAAGTCTCTTGGCGACATTAACGATAACCATGTTGGAATCAACATTAATTCGG 415
Query 556 TTGATTCGGTGGTTTCTGTGAAATCCGGTTATTGGGTT-A-T---GA-CA--AG-AA--- 603
|| |||| ||||||| |||| ||||||||||| || | | || | || ||
Sbjct 416 TTAATTCAACGGTTTCTAAGAAAGCCGGTTATTGGATTCAATCAAGAACCGGAGGAAAAA 475
Query 604 GC-GGTTGGTTATTTAAGGATTTGAAGCTAAGTAGTGGAGATAGATACAAGGCTTGGATT 662
|| ||| |||| || ||||| |||||||||||| | | || |||||| |||||||||
Sbjct 476 GCCGGT-GGTTGTTCAAGGAATTGAAGCTAAGT-GAA-A-ATGGATACAGGGCTTGGATA 531
Query 663 GAGTACAACAACAATTATAAAGTAGTCTCTGTTACGATTGGT--TTAGCGCATTTGAAGA 720
|||||| | ||| | || || | | || ||||| || || | || ||| |
Sbjct 532 GAGTACGAGAACGGG-A-AA-GT-GACA--GTCACGATCGGACGTT--CTCAG--GAA-A 580
Query 721 AACCGAACCGGCCATTGATTGAAGCAAAATTCGATCTTTCCAAGGTCATACACGAGGTAA 780
||||||| |||||||||| ||||| | | |||||||||| ||||| | |||| ||
Sbjct 581 AACCGAAGAGGCCATTGATCGAAGCGAGAGTCGATCTTTCTAAGGTTTTTTTCGAGAAAA 640
Query 781 TGTATACCGGTTTTGCTGGTTCGATGGGTCGTGGTGTCGAGCGTCACGAGAT-TTGGGAC 839
||||| |||||||||| ||||| ||||| ||||| ||||||||||||||||| |||| ||
Sbjct 641 TGTATGCCGGTTTTGCCGGTTCAATGGGACGTGGCGTCGAGCGTCACGAGATCTTGG-AC 699
Query 840 TGGACTTT 847
|||| |||
Sbjct 700 TGGAGTTT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5