BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53080.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474427 jgi|Araly1|474427|fgenesh2_kg.1__4381__AT1G53080.1 1225 0.0
Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740 296 2e-79
> Ahg474427 jgi|Araly1|474427|fgenesh2_kg.1__4381__AT1G53080.1
Length=834
Score = 1225 bits (663), Expect = 0.0
Identities = 783/841 (93%), Gaps = 8/841 (1%)
Strand=Plus/Plus
Query 1 ATGCAGATCCACAAACTCTGTATTTTTGTTCTGTTCATATCTTTGTTAAGCTCTAAAACC 60
||||||||||| ||||||||| |||||| |||||||||||||||||| ||| ||||||||
Sbjct 1 ATGCAGATCCAAAAACTCTGTTTTTTTGCTCTGTTCATATCTTTGTTCAGCACTAAAACC 60
Query 61 ATTTCCGCCGTCAAATTCAACTTCAACCGTTTCGACGGAACAAATCTAATCTTCATCGGG 120
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||
Sbjct 61 ATTTCCGCCGTCAAATTCAACTTCAACCATTTCGACGGTACAGATCTAATCTTCCTCGGG 120
Query 121 TACGCCGAGCTAGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACC 180
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGCGGAGCTGGGACCAGCAACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCATGACC 180
Query 181 CGTGACAACATTCCATTCTCACATGGTCAAGGTCTCTACACAGATCCAATCCCATTCAAA 240
|||| ||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 181 CGTGGCAAAAATCCTTTCTCACATGGTCGAGGTCTCTACACAGATCTAATCCCATTCAAA 240
Query 241 TCTTCCAACAACACATCTTCTTCTGTTTACTCTTTCAAAACATCTTTCACTTTCTCCATC 300
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 241 TCTTCCAACAACATTTCTTCTTCTGTTTACTCTTTTAAAACATCTTTCACTTTCTCTATC 300
Query 301 ACTCCTCGACGGTCAAACCCTAACCCTGGTCATGGTATCGCCTTCATCGTGGTCCCAACC 360
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 ACTCCTCGCCGGTCAAACCCTAACCCTGGTCATGGTCTCGCCTTCATCGTGGTCCCAACC 360
Query 361 GTAGCCTACGAGTACGACCAAGACTCAACCCGCGGCTTCCTCGGTCTAGTTAACCTCACA 420
| ||| | |||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 361 --A---TAC-ACTACGACCAAGACTCAACCCGTGGCTTCCTTGGTCTAGTTAACCGCACA 414
Query 421 ACCAATGGCAATCCTAATAACCATCTCTTTGCGGTCGAATTCGATGTTTTCCAAGACAAA 480
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 415 ACCAATGGCAATCCTAATAACCATCTTTTTGCGGTTGAATTCGATGTTTTCCAAGACAAA 474
Query 481 CGTTTTGGTGATATTAATGATAATCATGTTGGTGTTAATATTAACTCTGTTAACTCAAAG 540
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||
Sbjct 475 CGTTTTGGTGATATTAATGATAATCATGTTGGTATCAATATTAACTCTGTTACCTCAAAA 534
Query 541 GTTTCTGAGAAAGCTGGGTATTGGATTCAGACAAGAACTAGAGGGAAGAATCAATGGTTG 600
||||||||||||||||| |||||| |||||||||||||| |||| || ||||||||||||
Sbjct 535 GTTTCTGAGAAAGCTGGTTATTGGGTTCAGACAAGAACTGGAGGAAACAATCAATGGTTG 594
Query 601 TTTAAGGAAGTGAAGCTTAGTAGCGGAGACAACTACAAAGCTTGGATTGAGTATAAGAAC 660
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 595 TTTAAGGAAGTGAAGCTTAGTAGCGGAGATAACTACAAAGCTTGGATCGAGTACAAGAAC 654
Query 661 AGTAAAGTCATTGTTTGGCTTGCACCTGCGCATTTAAAGAAACCGAAGAGGCCATTGATC 720
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 655 AGTAAAGTCATTGTTTGGCTCGCACCTGCCCATTTAAAGAAACCGAAGAGGCCATTGATC 714
Query 721 GAAACACAAGTTGATCTCTCGGAGGTGGTTCTTGAGACTATGTATACCGGCTTTTCC-GG 779
|||||||||||||||||||| |||||||||||||| || |||||||| || |||| | ||
Sbjct 715 GAAACACAAGTTGATCTCTCTGAGGTGGTTCTTGAAACAATGTATACTGG-TTTTGCTGG 773
Query 780 TTCGATGGGTCGTGGCGTCGAGCGTCACGACATTTGGAGCTGGAGTTTTGAGAACACCGC 839
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 774 TTCGATGGGTCGTGGCATCGAGCGTCACGACATTTGGAGCTGGAGTTTCGAGAACACCGC 833
Query 840 C 840
|
Sbjct 834 C 834
> Ahg914486 jgi|Araly1|914486|Al_scaffold_0001_4740
Length=729
Score = 296 bits (160), Expect = 2e-79
Identities = 565/752 (75%), Gaps = 62/752 (8%)
Strand=Plus/Plus
Query 119 GGT-ACGCCGAGCTA-GGACCAGCA-ACCGATGGCATGAGCCGGTCCGGAGCTCTCTCCA 175
||| |||||||| || | |||| | ||||||| |||||| ||| |||||||| | |
Sbjct 13 GGTGACGCCGAG-TATGCTCCAG-AGCCCGATGGTATGAGCAAGTCAGGAGCTCT-TGGA 69
Query 176 -TGACCCGTGACAACATTCCATTCTCACATGGTCAAGGTC-TCTACA-CAGATCCAATCC 232
||| ||||||||| | || ||||| ||||||| | | | | | || || |||||||||
Sbjct 70 TTGAGCCGTGACAATGTCCCTTTCTCTCATGGTCGA-GCCATTTTCATCA-ATCCAATCC 127
Query 233 CATTCAAATCTTCCAACAAC-ACATCTTCTTCTGTTTACTCTTTCAAAACATCTTTCACT 291
| |||||| | | || | | ||||| ||||| |||||||||||||| |||||||||
Sbjct 128 CTTTCAAA-C--CTAA-TGCTTCTTCTTCCTCTGTCTACTCTTTCAAAACTTCTTTCACT 183
Query 292 TTC-TCCATCACTCCTCGACGGTCAAACCCTAA-CCCTGGTCATGGTATCGCCTTCATCG 349
||| | ||| | |||||| ||| ||| ||||| ||| |||||||| ||||||| || |
Sbjct 184 TTCGT-CATTAGTCCTCGCCGGAAAAATCCTAATCCC-GGTCATGGCCTCGCCTTTATTG 241
Query 350 TGGT-CCCAACCGTAGCCTACGAGTACGAC-CAAGAC-TCAACCCGCGGCTTCCTCGGTC 406
| || ||||| || | || | ||||| | | | || |||| |||| |||
Sbjct 242 TCGTCCCCAA-CG-A---TA--AAAACGACTC-TG-CTTCTGGTTTAGGCTACCTCAGTC 292
Query 407 TAGTTAACC--TCACAACCAATGGCAATCCTAATAACCATCTCTTTGCGGTCGAATTCGA 464
| || |||| | || ||| || ||||| || ||||||||||||||||||||||||||
Sbjct 293 TTGTGAACCGGT-TTAA-CAACGGTAATCCCAAGAACCATCTCTTTGCGGTCGAATTCGA 350
Query 465 TGT-TTTCCAAGACAAACGT-T-TTGGTGATATTAATGATAATCATGTTGGTGTTAATAT 521
||| ||| ||||||| || | |||| || ||||| ||||| |||||||| | || ||
Sbjct 351 TGTCTTTA-AAGACAA--GTCTCTTGGCGACATTAACGATAACCATGTTGGAATCAACAT 407
Query 522 TAACTCTGTTAACTCAAAGGTTTCTGAGAAAGCTGGGTATTGGATTCAGA-CAAGAACTA 580
||| || ||||| |||| ||||||| ||||||| || ||||||||||| | |||||||
Sbjct 408 TAATTCGGTTAATTCAACGGTTTCTAAGAAAGCCGGTTATTGGATTCA-ATCAAGAACCG 466
Query 581 GAGGGAAGAATCAA-TGGTTGTTTAAGGAAGTGAAGCTTAGTAGCGGA-GACAACTACAA 638
|||| || || | |||||||| |||||| ||||||| ||| | | | | ||||
Sbjct 467 GAGGAAA-AAGCCGGTGGTTGTTCAAGGAATTGAAGCTAAGT-GAAAATGG-A--TACAG 521
Query 639 AGCTTGGATTGAGTATAAGAACAGTAAAGTCATTGTTTGGCTTGCACCTGCGCATTTAAA 698
|||||||| ||||| ||||| | ||||| | || | | | || | | || |||
Sbjct 522 GGCTTGGATAGAGTACGAGAACGGGAAAGTGACAGTCACGATCGGACGTTCTCAGG-AAA 580
Query 699 GAAACCGAAGAGGCCATTGATCGAAAC-ACAAGTTGATCTCTCGGAGGTGGTTCTT-GAG 756
|| ||||||||||||||||||||| | | | || ||||| || |||| || || |||
Sbjct 581 -AA-CCGAAGAGGCCATTGATCGAAGCGAGA-GTCGATCTTTCTAAGGTTTTT-TTCGAG 636
Query 757 ACTATGTATACCGGCTTTT-CCGGTTCGATGGGTCGTGGCGTCGAGCGTCACGACAT-TT 814
| |||||| |||| |||| ||||||| ||||| |||||||||||||||||||| || ||
Sbjct 637 AAAATGTATGCCGG-TTTTGCCGGTTCAATGGGACGTGGCGTCGAGCGTCACGAGATCTT 695
Query 815 GGAGCTGGAGTTTTGAGAACACCGCCAAAAAC 846
||| ||||||||||||||||| |||||||||
Sbjct 696 GGA-CTGGAGTTTTGAGAACAGTGCCAAAAAC 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5