BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53090.1
Length=2690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914489 jgi|Araly1|914489|Al_scaffold_0001_4743 3563 0.0
Ahg929326 jgi|Araly1|929326|scaffold_301783.1 521 8e-147
> Ahg914489 jgi|Araly1|914489|Al_scaffold_0001_4743
Length=2361
Score = 3563 bits (1929), Expect = 0.0
Identities = 2247/2395 (94%), Gaps = 44/2395 (2%)
Strand=Plus/Plus
Query 94 ATGAAGGGTTCTTCAGAATCTAGTTCCAGAGGATTAAACAACACCTCTGGTGTTTCAGAG 153
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAGGGTTCTTCAGAATCTAATTCCAGAGGATTAAACAACACATCTGGTGTTTCAGAG 60
Query 154 TTTTGTACAGATGGTTCTAAGTCTTTGTCTCACATTGATTATGTCAGAAGCTTACTTGGT 213
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTGTACTGATGGTTCTAAGTCTTTGTCTCACATTGATTATGTCAGAAGCTTACTTGGT 120
Query 214 TCACATAAAGAAGCTAACTTGGGAGGACTTGATGATGACTCTATTGTCAGAGCTTTGGAA 273
||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 TCACACAAAGAAGATAACTTGGTTGGACTTGATGATGACTCTATTGTTAGAGCTTTGGAA 180
Query 274 TGTGAGGATGTTAGCTTGCGTCAGTGGTTAGACAATCCAGACCGATCCGTTGATGCCTTT 333
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TGTGAGGATGTTAGCTTGCGTCAGTGGTTAGACAATCCGGACCGATCCGTTGATGCCTTT 240
Query 334 GAGTGTTTTCATGTTTTCAGACAGATTGTTGAGATTGTTAATGCAGCTCACTCTCAAGGC 393
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 GAGTGTTTTCACGTTTTCAGACAGATTGTTGAGATTGTGAATGCAGCTCACTCCCAAGGC 300
Query 394 ATTGTTGTTCATAATGTTAGGCCTTCTTGTTTCGTTATGTCTTCGTTTAACAATGTTTCG 453
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 ATTGTTGTTCATAATGTTAGGCCTTCTTGTTTCGTTATGTCTTCGTTTAACCATGTTTCG 360
Query 454 TTTATCGAATCCGCTTCTTGTTCGGATTCCGGGTCTGATGAGGATGCAACAACAAAGTCT 513
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTATCGAATCCGCTTCATGTTCGGATTCCGGGTCTGATGAGGATGCAACAACAAAGTCT 420
Query 514 CGAGAGATTGGTAGCTCGAGACAAGAGGAGATTCTATCAGAGAGACGAAGCAAACAACAA 573
||||||||||||||||||||| |||| ||| |||||| | |
Sbjct 421 CGAGAGATTGGTAGCTCGAGAAAAGATGAGTTTCTAT--------------------C-A 459
Query 574 GAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGATATTAGCAATGGAGATGAGTTGG 633
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GAGGAAGTAACGAAGCAACCTTTCCCTATGAAACAGATATTAGCAATGGAGATGAGTTGG 519
Query 634 TATACAAGTCATGAAGAAGATAATGGTTCTCTGTGTAATTGTGCTTCTGATATTTACCGT 693
|| ||||||| |||||||||||||||||||| | ||||||||||||||||| |||| |||
Sbjct 520 TACACAAGTCCTGAAGAAGATAATGGTTCTCCGAGTAATTGTGCTTCTGATGTTTATCGT 579
Query 694 CTTGGTGTTCTTCTCTTTGAGCTATTCTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGA 753
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 580 CTTGGTGTTCTTCTCTTTGAGCTATTTTGCCCTGTCTCCTCAAGAGAAGAGAAGTCAAGA 639
Query 754 ACTATGTCTAGTTTAAGACATCGTGTTCTTCCCCCTCAGATATTACTCAATTGGCCTAAA 813
|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct 640 ACTATGTCTAGTTTAAGACATCGTGTTCTTCCACCTCAGATATTGCTCAATAGGCCTAAA 699
Query 814 GAAGCTTCCTTTTGCTTGTGGTTACTGCATCCTGAGCCTAGCTGTCGACCATCGATGAGT 873
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 700 GAAGCTTCCTTTTGCCTGTGGTTACTGCATCCTGAGCCTAGCTATCGACCATCGATGAGT 759
Query 874 GAGTTGCTACAAAGTGAGTTTATCAACGAACCTAGAGAGAATTTGGAAGAACGTGAAGCT 933
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 760 GAGTTGCTACAAAGTGAGTTTATCAACGAACCTAGAGAGAATTTGGAAGAACGCGAAGCT 819
Query 934 GCAATGGAGCTACGGGATAGAATCGAGGAACAAGAGTTATTACTCGAGTTCTTGTTTCTG 993
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 820 GCGATGGAGCTACGGGATAGAATCGAGGAACAAGAGTTATTGCTTGAGTTCTTGTTTCTG 879
Query 994 ATTCAACAGAGGAAACAAGAAGCTGCAGACAAATTGCAGGATACAATATCGCTTCTCTCT 1053
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 880 ATTCAACAGAGAAAACAAGAAGCTGCAGACAAATTGCGGGATACGATATCGCTTCTTTCT 939
Query 1054 TCTGATATCGATCAAGTCGTAAAGCGACAGTTGGTTTTACAGCAAAAAGGGAGAGATGTC 1113
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 940 TCTGATATTGATCAAGTCGTAAAGCGACAGTTGGTTTTACAGCAAAAAGGGAGTGATGTC 999
Query 1114 CGTTCGTTCTTAGCCTCAAGAAAACGGATTAGACAAGGAGCTGAGACCA-CTGCAGCAGA 1172
|||||||| || |||||||||||||||||||||||||||| ||||| || |||| ||| |
Sbjct 1000 CGTTCGTTTTTGGCCTCAAGAAAACGGATTAGACAAGGAGTTGAGA-CAGCTGCGGCAAA 1058
Query 1173 GGAAGAAAATGATGATAATAGCATTGATGAGGAATCTAAGCTTGATGATACTCTAGAAAG 1232
||||| ||| ||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 1059 GGAAG-AAA--ATG---AT-G-A--G--GAGGAATCTAAGCTTGATGATACTCTAGAAAG 1106
Query 1233 TACACTTCTTGAAAGCTCTAGATTAATGAGAAATTTGAAGAAACTGGAATCAGTCTACTT 1292
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TACACTACTTGAAAGCTCTCGGTTAATGAGAAATTTGAAGAAACTGGAATCAGTCTACTT 1166
Query 1293 TGCAACACGATACAGACAAATCAAGGCTGCTACTGCTGCTGAAAAACCGTTGGCTAGATA 1352
||||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1167 TGCAATGCGGTACAGACAGATTAAGGCTGCTGCTGCTGCTGAAAAACCGTTGGCTAGATA 1226
Query 1353 TTATTCGGCATTGAGTTGTAACGGTAGAAGTTCAGAAAAGAGTTCAAT--G-AG-CC-A- 1406
|||||||||||||||| |||| ||||||||||||||||| |||||||| | || || |
Sbjct 1227 TTATTCGGCATTGAGTAGTAATGGTAGAAGTTCAGAAAAAAGTTCAATGAGCAGCCCGAC 1286
Query 1407 AC--C-ATCAAAAGATCCTATCAATGATTCTAGACAAGGCGGGTGGATCGATCCATTCCT 1463
|| | | |||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 1287 ACAACTACCAAAAGATCCTATCAATGATTCAAGACAGGGCGGTTGGATCGATCCATTCCT 1346
Query 1464 CGAGGGTTTGTGCAAGTATTTGTCTTTTAGTAAGCTAAGAGTGAAAGCAGATTTGAAGCA 1523
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1347 CGAGGGTTTGTGCAAGTATTTATCTTTTAGTAAGCTAAGAGTGAAAGCCGATTTGAAGCA 1406
Query 1524 AGGAGACTTGTTGAACTCGTCTAACCTTGTTTGCGCAATTGGGTTTGATCGTGATGGAGA 1583
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1407 AGGAGACTTGTTGAACTCGTCTAACCTTGTTTGTGCAATTGGGTTTGACCGTGATGGGGA 1466
Query 1584 GTTTTTCGCCACGGCAGGCGTCAACAAAAAGATCAAGATATTCGAATGCGAGTCGATAAT 1643
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1467 GTTTTTCGCTACGGCAGGCGTCAACAAAAAGATTAAGATATTTGAATGCGAGTCGATAAT 1526
Query 1644 AAAAGATGGCCGGGACATTCATTACCCTGTTGTGGAACTTGCTAGCCGGTCTAAGCTTAG 1703
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1527 AAAAGATGGGCGGGACATTCATTACCCGGTTGTGGAACTTGCTAGCCGGTCTAAGCTTAG 1586
Query 1704 TGGTATATGTTGGAACAGTTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGT 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 TGGTATATGTTGGAACAGTTACATTAAGAGCCAAGTCGCATCAAGTAACTTTGAAGGCGT 1646
Query 1764 GGTTCAAGTTTGGGATGTTGCAAGAAACCAGTTGGTTACAGAGATGAAGGAGCATGAGAA 1823
||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1647 AGTTCAGGTTTGGGATGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAAGAGCATGAGAA 1706
Query 1824 GCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCTAGTGGTAGTGA 1883
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1707 GCGTGTATGGTCCATCGATTATTCATCAGCAGATCCAACATTGTTAGCCAGCGGTAGTGA 1766
Query 1884 TGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGAC 1943
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 CGATGGTTCGGTTAAGCTCTGGAGTATCAATCAGGGGGTTAGTATTGGAACCATCAAGAC 1826
Query 1944 AAAGGCAAACATATGTTGTGTTCAGTTTCCATCAGAGACGGGTCGGTCTTTAGCATTTGG 2003
||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 1827 AAAGGCAAACATATGTTGTGTCCAGTTTCCGTCAGAGTCGGGTCGGTCTTTAACATTTGG 1886
Query 2004 CTCAGCAGATCACAAAGTTTACTACTATGATCTAAGGAACCCCAAGCTTCCTCTTTGCAC 2063
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1887 TTCAGCAGATCACAAAGTTTACTACTATGATCTAAGGAGCCCCAAGCTTCCTCTTTGTAC 1946
Query 2064 AATGATTGGTCACCACAAGACCGTGAGTTATGTTAGATTTGTAGATTCATCAACACTTGT 2123
||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1947 AATGATTGGTCACAACAAGACCGTGAGTTATGTCAGATTTATGGATTCATCAACACTTGT 2006
Query 2124 TTCTTCTTCGACGGATAACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTAT 2183
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2007 GTCGTCTTCTACGGATAACACGCTGAAGCTATGGGACTTATCAATGTCTATTTCCGGTGT 2066
Query 2184 TAATGAAACGCCTCTTCACTCATTCATGGGACACACTAATGTTAAGAACTTTGTTGGATT 2243
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 TAACGAAACACCTCTTCACTCATTCATGGGACACACTAATGTTAAGAACTTTGTTGGATT 2126
Query 2244 ATCAGTCTCTGACGGGTATATAGCAACAGGCTCTGAGACTAACGAGGTTTTTGTGTACCA 2303
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2127 ATCGGTCTCTGACGGGTATATAGCAACAGGCTCGGAGACTAATGAGGTTTTTGTGTACCA 2186
Query 2304 CAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGA 2363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 CAAGGCATTTCCAATGCCGGTTTTGTCGTACAAGTTCAAAACTATAGACCCTGTGTCGGA 2246
Query 2364 ACTCGAAGTAGACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCGTC 2423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2247 TCTCGAAGTAGACGATGCCTCGCAGTTCATATCCTCAGTCTGCTGGCGGGGACAGTCCTC 2306
Query 2424 GACCTTAGTTGCTGCAAACTCCACCGGCAATATCAAGATTTTGGAGATGGTATGA 2478
||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 2307 GACCTTAGTCGCTGCAAACTCCACTGGCAACATCAAGATTCTGGAGATGGTATGA 2361
> Ahg929326 jgi|Araly1|929326|scaffold_301783.1
Length=2612
Score = 521 bits (282), Expect = 8e-147
Identities = 476/566 (84%), Gaps = 27/566 (5%)
Strand=Plus/Plus
Query 553 GAGAGACGAA--GCAAACAACAAGAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGA 610
|||||||||| | | | ||| |||||||| |||||| |||||||| || |||||||| |
Sbjct 567 GAGAGACGAATTG-AGA-AACTAGAGGAAGAAAAGAATCAACCTTTTCCGATGAAACATA 624
Query 611 TATTAGCAATGGAGATGAGTTGGTATACAAGTCATGAAGAAGATAATGGTTC-TCTGTGT 669
||||||||||||||| |||||||||||||| | |||||| ||| || ||| || ||
Sbjct 625 TATTAGCAATGGAGACAAGTTGGTATACAAGCCCTGAAGAGGATGTTGATTCTTC-AAGT 683
Query 670 AATTGTGCTTCTGATATTTACCGTCTTGGTGTTCTTCTCTTT-GAGCTATTCTGCCCTGT 728
| ||||||||| ||| |||| || ||||| |||||||| ||| |||||||| ||||||||
Sbjct 684 ACTTGTGCTTCAGATGTTTATCGCCTTGGCGTTCTTCT-TTTCGAGCTATTTTGCCCTGT 742
Query 729 CTCC-TCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCC 787
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 743 -ACCTTCAAGAGAAGAGAAATCAAGAACTATGTCTAGTTTAAGACATCGCGTTCTTCCGC 801
Query 788 CTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTT-TGCTTGTGGTTACTGCATCCT 846
|||||||||| ||||| || || ||||||||||| ||| |||||||||||||||||||||
Sbjct 802 CTCAGATATTGCTCAAATGTCCAAAAGAAGCTTC-TTTCTGCTTGTGGTTACTGCATCCT 860
Query 847 GAGCCTAGCTGTCGACCATCGATGAGTGAGTTGCTACAAAGTGAGTTTATCAAC-GAACC 905
||||| || ||||||||||| |||||||| ||||| ||||| |||||||| ||| |||||
Sbjct 861 GAGCCAAGTTGTCGACCATCAATGAGTGACTTGCTGCAAAGCGAGTTTAT-AACTGAACC 919
Query 906 TAGAGAGAATTTGGAAGAACGTGAAGCTGCAATGGAGCT-ACGGGATAGAATCGAGGAAC 964
||||| |||||||||||||||||||||||||| |||| | |||| |||||||||||||
Sbjct 920 AAGAGATAATTTGGAAGAACGTGAAGCTGCAATCAAGCTTA-GGGACAGAATCGAGGAAC 978
Query 965 AAGAGTTATTACTCGAGTTCTTGTTTCTGATTCAACAGAGGAAA-CAAGAAGCTGCAG-A 1022
| |||| ||||||||||||||||| |||||||||||||| ||| || ||| |||| | |
Sbjct 979 AGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGAG-AAAGCAGGAATCTGC-GTA 1036
Query 1023 CAAATTGCAG-GATACAATAT-CGCTTCTCTCTTCTGATATCGATCAAGTCGTAAAGCGA 1080
| ||||| | ||||| | | | ||||| |||||||| || || ||||| |||||| ||
Sbjct 1037 TAGATTGC-GTGATACGGT-TGCACTTCTTTCTTCTGACATTGAGCAAGTTGTAAAGAGA 1094
Query 1081 CAGTTGGTTTT-ACAGCAAAAAGGGA 1105
|| || |||| | || |||||||||
Sbjct 1095 CAATTAATTTTGA-AG-AAAAAGGGA 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101472412680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5