BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53100.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474430 jgi|Araly1|474430|fgenesh2_kg.1__4384__AT1G53100.1 1921 0.0
Ahg478965 jgi|Araly1|478965|fgenesh2_kg.3__1666__AT3G15350.1 671 0.0
> Ahg474430 jgi|Araly1|474430|fgenesh2_kg.1__4384__AT1G53100.1
Length=1386
Score = 1921 bits (1040), Expect = 0.0
Identities = 1258/1362 (92%), Gaps = 19/1362 (1%)
Strand=Plus/Plus
Query 36 AGGAATTAGTGTCTGATGATGCTAGTGGCCTAATTCGAGCTTGAGCTGAGGATTTTGATT 95
|||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1 AGGACTTAGTGTGTGATGATGCTAGTGGCTTAATTCGAGCTTGAGCTGAGGGTTTTGATT 60
Query 96 CAGTTTTTGGTGTCATGCTTTTGTCTCAAGATCACAAAATTCTCTTCAATGGGGTACGTA 155
||| |||||||||||||||||||||||| || ||| |||||||||||||| | | ||
Sbjct 61 CAGATTTTGGTGTCATGCTTTTGTCTCATGACCAC-AAATTCTCTTCAAT---G-AGGT- 114
Query 156 AATATGTAATCATGGAGAAGAAATATGTATTTTCATTTGTTATCACATCTCTTGTCTGCG 215
|| ||| | ||||||||||||| |||||| ||||| || |||||||||||||||||||
Sbjct 115 -ATGTGT--TTATGGAGAAGAAATGTGTATTCTCATTAGTGATCACATCTCTTGTCTGCG 171
Query 216 TTGTTCTCCTTGCAACTTCCTTCAACATTGGTTTAATGTCTTCACTTCGACCACCGATTA 275
|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 172 TTGTACTCATTGCAACTTCCTTCAACATTGGTTTAATCTCTTCACTTCGACCACCGGTTA 231
Query 276 ATGGAACTTTATCAAGTTTCCCCAAAAATGATTCGAACGTTGTAG-GAAAACAACCTCGT 334
||||||||||||| ||| | |||||||||||||| | ||||||| | ||||||||| |
Sbjct 232 ATGGAACTTTATCCCGTTACGCCAAAAATGATTCGGATGTTGTAGCG-CAACAACCTCTT 290
Query 335 GAAGACGACAAGCTCCCACGTTTCGCTTACCTTGTTTCAGGATCTAAAGGAGATCTTGAA 394
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 291 GAAGTCGACAAGCTCCCACGTTTCGCTTACCTTGTTTCGGGATCTAAAGGAGATCTTGAA 350
Query 395 AGCCTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGCCTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTG 410
Query 455 GATCTTGAATCACCGGTTGATGAGAGATCAGAGTTAGCTTCTCGCATTTCAAACGATCCT 514
|||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 411 GATCTTGAATCACCCGTTGATGAGAGGTCAGAGTTGGCTTCTCGCATTAAAAACGATCCT 470
Query 515 ATGTATTCAAAAGCAGGAAATGTATATATGATAACTAAAGCTAATCTTGTGACTTATACC 574
|||||||||||| ||| ||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 471 ATGTATTCAAAAATAGGGAATGTCTATATGATAGCCAAAGCTAATCTTGTGACTTATACC 530
Query 575 GGACCAACAATGGTGGCGAATACGCTTCACGCATGTGCGATTCTTCTTAAAAGAACCCCG 634
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 531 GGACCAACAATGGTGGCGAATACCCTTCACGCATGCGCGATTCTACTTAAAAGAACCCCG 590
Query 635 GATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGATGAT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 GATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGACGAT 650
Query 695 CTGATTCATACATTTTCGACATTGGACCGGAACCTTAACTTTATCGAGCACACAAGTTC- 753
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 651 CTGATTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAG-TCG 709
Query 754 CTTAGGCTGGAAATACAAGAAGCGGGCAATGCCATTAATAATTGATCCTGGACTCTATAT 813
||||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 710 CTTAGGCTGGAAAAACAAGAAGCGGGCAATGCCATTAGTGATTGATCCCGGACTCTATAT 769
Query 814 GTTAAACAAATCAAACGTTTTATTGGTTAGACCTAATCGAAGTTTACCTTCTGCTTTCAA 873
||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||
Sbjct 770 GTTAAACAAATCAAACGTTTTATGGGTCAGGCCTAATCGAAGTTTACCAGCTGCTTTCAA 829
Query 874 GTTATTTA-C----C-GCTTGGATGGCTCTATCGCACGCATTCGTGGAGTATATCATATA 927
|||||||| | | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 830 GTTATTTACCGGATCAGCTTGGATGGCTCTATCGCACTCATTCGTGGAGTATATCATATG 889
Query 928 CGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTTCTCC 987
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTTCTCC 949
Query 988 TGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACCGCGGTGAA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACCGCGGTGAA 1009
Query 1048 CCATGATCTTCACTACATCGCATGGGACAAGCCACCGAGGCAGCATCCTCGTATGTTGTC 1107
|||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1010 CCATGATCTTCACTACATTGCATGGGATAAGCCGCCGAGGCAGCATCCTCGCATGTTGTC 1069
Query 1108 TCAAAGAGACATGGGAAAGATGATTTCGAGCGGATCTGCATTTGGTCGGAAGTTCAGAAG 1167
| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1070 CCTAAGAGACATGGGAAAGATGACTGCGAGCGGATCTGCATTTGGTCGGAAATTCAGAAG 1129
Query 1168 AAATGATACTGTTTTGGATAAGATTGATAAGGAACTGCTTATACGGATAAACGAAGACGG 1227
|||||| || |||||||||||||| |||||| ||||||| | ||||| || ||||||||
Sbjct 1130 AAATGACACAGTTTTGGATAAGATCGATAAGTTACTGCTTCTTCGGATGAAGGAAGACGG 1189
Query 1228 TTTTACTCCAGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTCGGTTGTCGAAGATGTGGC 1287
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1190 TTTTACTCCCGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTCGGTTGTCGAAGACGTGGC 1249
Query 1288 TAGGATCAGGCCTAGCTCAGGGGCTGTGAGGCTCAAGGAGCTTGTAGATAGGTTAGTTAC 1347
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1250 TAGGATCAGGCCTAGCTCAGGGGCTGTGAGGCTCAAGGGGCTTGTAGATATGTTAGTTAC 1309
Query 1348 AGAGGCTAAATTAGGTAAGAATCAATGTGTATAAAGAATCAA 1389
|||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 1310 GGAGGCTAAATCAGGAAAGAATCAATGTGTATAGAGAATCAA 1351
> Ahg478965 jgi|Araly1|478965|fgenesh2_kg.3__1666__AT3G15350.1
Length=1928
Score = 671 bits (363), Expect = 0.0
Identities = 765/955 (80%), Gaps = 43/955 (5%)
Strand=Plus/Plus
Query 341 GACAAGC-TCCCACGTTTCGCTTACCTTGTTTCAGGATCTAAAGGAGATCTTG-AAAGCC 398
||||||| |||| ||||| || ||||||||||| || |||||||| ||| | | |||| |
Sbjct 609 GACAAGCTTCCC-CGTTTTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAG-C 666
Query 399 TTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTGGATC 458
|||||||||| ||||||||| |||||||||| || ||||| || |||||||||||||||
Sbjct 667 TTTGGAGAACACTTAGAGCAGTGTACCATCCCAGGAACCAGTATGTTGTTCACTTGGATC 726
Query 459 TTGAATCACCGGTTGATGAGAGATCAGAGTTAGCTTCTCGCATTTCA-AACGATCCTATG 517
||||||||||||| |||||||||| |||| |||||||||| ||| | || |||||||||
Sbjct 727 TTGAATCACCGGTGGATGAGAGATTAGAGCTAGCTTCTCGGATTA-ATAATGATCCTATG 785
Query 518 TATTCA-AAAGCAGGAAATGTATATATGATAACTAAAGCTAATCTTGTGACTTATACCGG 576
||||| ||| | |||| ||||||||||||||| || ||||| |||||||| |||| ||
Sbjct 786 TATTCTGAAACCGGGAA-TGTATATATGATAACCAAGGCTAACCTTGTGACATATAAAGG 844
Query 577 ACCAACAATGGTGGCGAATACGCTTCACGCATGTGCGATTCTTCTTAAAAGAACCCCGGA 636
|||||| |||||||| ||||| |||||||| ||||||||||||||||| |||| | || |
Sbjct 845 ACCAACGATGGTGGCAAATACTCTTCACGCTTGTGCGATTCTTCTTAAGAGAAGCGCGAA 904
Query 637 TTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGATGATCT 696
|||||||||||||| || || |||||||| |||||||| || ||||| |||||||||||
Sbjct 905 CTGGGATTGGTTTATTAACCTCAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCT 964
Query 697 GATTCATACATTTTCGACATTGGACCGGAACCTTAACTTTATCGAGCACACAAGTTC--C 754
| |||| || |||||||||||||| |||||||| ||||||||||| ||||||||| | |
Sbjct 965 GCTTCAAACGTTTTCGACATTGGATCGGAACCTCAACTTTATCGAACACACAAGT-CAAC 1023
Query 755 TTAGGCTGGAAATACAAGAAGCGGGCA-ATGCCATTAATAATTGATCCTGGACTCTA-TA 812
| || |||||| | ||||||| ||| | ||||||||| ||||||||||||||||| |
Sbjct 1024 TG-GGTTGGAAAGAGGAGAAGCGAGCACA-GCCATTAATGATTGATCCTGGACTCTACT- 1080
Query 813 TGTTAAACAAATCAAACGTTTTATTGGTT-AGACCTAATCGAAGTTTACCTTCTGCTTTC 871
|||| ||||||||| | ||| | ||| | | |||| |||||||| || |||| |||
Sbjct 1081 TGTTGAACAAATCAGATATTT-ACTGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTC 1139
Query 872 AAGTTATTTAC-----C-GCTTGGATGGCTCTATCGCACGCATTCGTGGAGTATAT-CAT 924
|||||||| || | ||||||||||||||||| | | |||| || |||||| | |||
Sbjct 1140 AAGTTATTCACTGGATCAGCTTGGATGGCTCTATCACGCCCATTTGTAGAGTAT-TGCAT 1198
Query 925 ATACGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTTC 984
|| || ||||||||||||||| |||| | || ||||| |||||||| |||||||| ||
Sbjct 1199 ATGGGGATGGGACAATTTACCACGAACCCTCCTAATGTATTACACCAACTTCGTTTCATC 1258
Query 985 TCCTGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACC-GCGG 1043
|| |||||||||||||| ||||| || || || || || ||||| | ||||| | || |
Sbjct 1259 ACCCGAAGGTTACTTCCAGACAGTGATTTGCAATGTACCCGAGTT-TGCAAAAACTGCAG 1317
Query 1044 TGAACCATGATCTTCACTACATCGCATGGGACAAGCCACCG-AGGCAGCATCCTCGTATG 1102
| |||||||| || |||||||| | |||||||| || ||| || ||||| || | ||
Sbjct 1318 TAAACCATGACCTCCACTACATTTCCTGGGACAATCCGCCGCAG-CAGCACCCACACGTG 1376
Query 1103 TTGTC--TCAAAGAGACA-TGGGAAAGATGATTTCGAGCGGAT-CTGCATTTGGTCGGAA 1158
||||| |||| || ||| || | |||||| ||||| || | |||| |||| | ||||
Sbjct 1377 TTGTCACTCAACGACACAATGC-A--GATGATATCGAGTGG-TGCTGCGTTTGCTAGGAA 1432
Query 1159 GTTCAGAAGAAATGATACTGTT-TTGGATAAGATTGATAAGGAACTGCTTATACGGATAA 1217
||||||||| | || | || ||| || || ||||||||| | |||| ||||| |
Sbjct 1433 ATTCAGAAGAGACGACAGAGTACTTG-ATCTTATCGATAAGGAATTACTTAGACGGAGGA 1491
Query 1218 ACG--AA-GACGGTTTTACTCCAGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTC 1269
| | || || |||||||||| || || |||||| ||||||||||| | |||||
Sbjct 1492 ATGGTAAAGATAGTTTTACTCCTGGTGGATGGTGCAGTGGGAAACCAAAATGCTC 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5