BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53110.1
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314636 jgi|Araly1|314636|fgenesh1_pm.C_scaffold_1003416 1735 0.0
> Ahg314636 jgi|Araly1|314636|fgenesh1_pm.C_scaffold_1003416
Length=2280
Score = 1735 bits (939), Expect = 0.0
Identities = 1182/1295 (91%), Gaps = 33/1295 (3%)
Strand=Plus/Plus
Query 282 GTGCGTCGAATTCTAAC-CGGGAAATTAAACGGTGATGAATCATCGACGGTGACCACCGA 340
|||||||| ||| | || |||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 5 GTGCGTCG-ATT-TTACTCGGGAAGTTAAACGGCGATGAATCATCTACGGTGACCACCGA 62
Query 341 GGAAGACGACGAAGCTGTGTTTTCCGGTGAAGAGTGGTGTGGAGAGAGTTC-TTACTGTT 399
||||||||| |||||||||||||||||||||||||||| ||| |||| || ||| ||||
Sbjct 63 GGAAGACGAAGAAGCTGTGTTTTCCGGTGAAGAGTGGTCTGGGGAGA-ATCTTTATTGTT 121
Query 400 TTTACTTCGTTAAGCAATTCGCTTACGATGACCCTGAGATTAAAG-CCAAGATTGATGAA 458
|||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 122 TTTACTTCGTGAAGCAATTCGCTTACGACGACCCTGAGATT-AAGACCAAGATTGATGAA 180
Query 459 GCTGATCATGAGGTTTATCATTGTAACACTGACCGGATTCACATTGCTAACAGATTGAAA 518
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 181 GCTGATAATGAGATTTATCATTGTAACACTAACCGGATTCACATTGCTAACAGATTAAAA 240
Query 519 TCCAAAAGGGCTGCGAGATTGTCTCTGGTTGCCTCAATGGAGACTTTGA--TGAGT-A-- 573
||||||||||||| |||||||||||||||||| |||||||||| ||||| | | | |
Sbjct 241 TCCAAAAGGGCTGAGAGATTGTCTCTGGTTGCTTCAATGGAGAATTTGAGTTCA-TCACT 299
Query 574 TGA-AAATA-AATGAAGTAGAGAAGGAACAAGAAGTAGTTAGAGGGAGGATTTACAGGTT 631
||| |||| |||| |||| ||||||||||||||| |||| | ||| |||||||| ||
Sbjct 300 TGATGAATACAATGCTGTAGGGAAGGAACAAGAAGTGGTTACAAAGAGAATTTACAGCTT 359
Query 632 AG-GTGAACGATTAAGTGAGATTAAGATGGAAATTGAGTTGTTGGATGTTCAAATGGCTT 690
| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 -GAGTGAAAGATTAAGTGACATTAAGATGGAGATTGAGTTGTTGGATGTTCAAATGGCTT 418
Query 691 GTGTACTTAATCAAAGAGATAAAGCTGTTGAAAGGATTAAGTTCTTGAGGATGCAACGAG 750
|||||||| |||||||||| ||||| || ||||||||||||||||||||||| |||||||
Sbjct 419 GTGTACTTGATCAAAGAGACAAAGCCGTCGAAAGGATTAAGTTCTTGAGGATACAACGAG 478
Query 751 ATAAAGGGAATGCTGCATTTTACCAGAGCCGTGTTGTTATGAAGAAAGCTATAGAATTGG 810
| |||||||||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||
Sbjct 479 ACAAAGGGAATGCTGCCTTTTACCGGAGTCGTGTTGTCATGAAGAAAGCTATAGAGTTGG 538
Query 811 CTGCTTCTGGAAATGTTAGAGATCTTGAAGAGCTCGCTGATTCCGAGGTTGAGAAA-TTT 869
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 539 CTGCTTCTGGAAATGTTAGAGATCTTGAAGAGCTCGCTGATTTTGAGGTTGA-AAATTTT 597
Query 870 ATGTCTCGTTGGAACAATGACAAGGCTTTTAGGGATA-ATTACAAGAAAAGAATCTTGCC 928
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 598 ATGTCTCGTTGGAACAATGACAAGGCTTTTAGGGA-AGATTACAAGAAAAGAATCTTGCC 656
Query 929 TTCAGTTAACGAGCGAAAGCTGAGGTGCGATGTGCAGATTAGGGACCTAGAAGGCAATCT 988
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 657 TTCACTTAATGAGCGAAAGCTGAGGCGCGATGTGCAGATTAGGGACCTAGAAGGCGATAT 716
Query 989 AGATACTGAGAATGGAAATGAAACAGTGGTGAAAAAAGCAATAGAATACAAGAGGTTTAG 1048
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 717 AGATACTGAGAATGGAAATGAAACAGTGGGGAAAAATGCAATAGAATTCAAGAGGTTTAG 776
Query 1049 TACTGAGGAG--GA--GA-G-TG--AT-GATTTTGATATCCCGGTGTATGagaagcttgg 1099
|||||||||| || || | || || ||||||||||| ||||||||||| ||||||||
Sbjct 777 TACTGAGGAGAAGAGTGATGATGTTATGGATTTTGATATACCGGTGTATGAAAAGCTTGG 836
Query 1100 aaaggaggaaaaagagattgatgaagaaacgttgaaggagaagaaacgagaagaGCAGTT 1159
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 837 AAAGGAGGAAGAAGAGATTGATGAAGAAACTTTGAAGGAGAAGAAACGGGAAGAGCAGTT 896
Query 1160 AGAGAAAGCTCGACTAGCGATGGAAAGGAAGAGGAAACTACATGAGAAAGCTGCTGCTAA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGAGAAAGCTCGACTAGCGATGGAAAGGAAGAGGAAACTACATGAGAAAGCTGCTGCTAA 956
Query 1220 AGCTGTCAtaagagttaagaaggaagctgagaagaaacgtaaggagcttgataagagagc 1279
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 957 AGCTGTCATAAGAGTTAAGAAGGAAGCTGAGAAGAAACTTAAGGAGCTTGAGAAGAGAGC 1016
Query 1280 gaagaagaagaag--G-CTGTATGTAAATCTTCTTCTGTGGATGTAGACAGAACAACAGA 1336
||||||||||||| | ||| || ||| ||||||||| || |||||||||||||||| ||
Sbjct 1017 GAAGAAGAAGAAGAAGGCTGCATTTAACTCTTCTTCTATGAATGTAGACAGAACAACTGA 1076
Query 1337 GACAGTCAGCGAGGCATCAAAACCAGAAAAGGAGAAGCTATTAAATGGGAGATCAGTGTT 1396
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GACAGTCACCGAGGCATCAGAACCAGAAAAGGAGAAGCTATTAAATGGGAGATCAGTGTT 1136
Query 1397 TCCAAAACAGAGAAGTTATAATTATAGATATCACGGAAAAGGAAATGACGCTGTCCTTAA 1456
||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||
Sbjct 1137 TCCAAAACAGAGAAGTTTTTGTTATAGACATCACGGAAAAGGAAATGACGCTGTCCTCAA 1196
Query 1457 AGCCATCATAAAGCGTAGAAAAGCTTATAGGTTATGGGTTTGGACTGTTTCCTCCGCTGC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1197 AGCCATCATAAAGCGTAGAAAAGCTTATAGGTTATGGGTTTGGACTGTTTCCTCCTCTGC 1256
Query 1517 AGTTGCTCTCCCACTCGCTCTCCTCGTTGTCTTCT 1551
| ||| |||| ||||| ||||||||||| | ||||
Sbjct 1257 AATTGTTCTCTCACTCACTCTCCTCGTTATATTCT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76637572940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5