BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53140.1
Length=2644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474434 jgi|Araly1|474434|fgenesh2_kg.1__4388__AT1G53140.1 3999 0.0
> Ahg474434 jgi|Araly1|474434|fgenesh2_kg.1__4388__AT1G53140.1
Length=2505
Score = 3999 bits (2165), Expect = 0.0
Identities = 2391/2504 (95%), Gaps = 0/2504 (0%)
Strand=Plus/Plus
Query 25 CCTTCGTCAATGGCGAATTCAAACACATACCTAACCACACCGACTAAAACCCCATCTTCA 84
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CCTTCTTCAATGGCGAATTCAAACACATACCTAACCACACCGACGAAAACCCCATCTTCG 60
Query 85 AGGAGAAACCAACAGAGTCAATCTAAGATGCAATCTCACTCCAAGGATCCGATAAACGCA 144
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGAAACCAACAGAGTCAATCGAAGATGCAATCTCACTCCAAGGATCCGATAAACGCA 120
Query 145 GAATCTAGGTCACGATTCGAGGCATACAATCGTCTTCAAGCAGCAGCCGTGGCTTTCGGA 204
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 121 GAGTCTAGGTCACGATTCGAGGCATACAATCGTCTCCAAGCAGCAGCCGTTGCTTTCGGA 180
Query 205 GAGAAACTTCCGATACCGGAGATTGTAGCCATTGGTGGTCAATCAGACGGCAAAAGCTCT 264
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 181 GAGAAACTTCCGATACCAGAGATTGTAGCCATTGGTGGCCAATCAGACGGAAAAAGCTCT 240
Query 265 CTTCTCGAAGCACTTTTAGGGTTCCGATTCAATGTCCGTGAAGTTGAAATGGGCACTCGA 324
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 241 CTTCTCGAAGCGCTTTTAGGGTTCCGATTTAATGTCCGTGAAGTTGAAATGGGTACTCGA 300
Query 325 CGCCCTTTGATTCTCCAGATGGTTCATGATTTATCAGCGTTAGAACCACGGTGTCGATTC 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCCCTTTGATTCTCCAGATGGTTCATGATTTATCAGCGTTAGAACCACGGTGTCGATTT 360
Query 385 CAGGATGAAGATTCTGAAGAATATGGAAGTCCAATTGTTTCGGCTACAGCAGTAGCAGAT 444
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CAGGATGAAGATTCTGAAGAATATGGAGGTCCAATTGTTTCGGCTACAGCAGTAGCAGAT 420
Query 445 GTAATTAGGTCTAGAACAGAGGCACTTTTGAAGAAGACGAAAACTGCAGTCTCGCCAAAG 504
|||||||||||||| |||||| | |||||||||||||||||||| ||||| ||| | |||
Sbjct 421 GTAATTAGGTCTAGGACAGAGTCGCTTTTGAAGAAGACGAAAACCGCAGTTTCGTCTAAG 480
Query 505 CCGATTGTGATGAGAGCTGAGTATGCTCATTGTCCAAATCTGACTATCATTGATACTCCT 564
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CCGATTGTGATGAGAGCTGAGTATGCCCATTGTCCAAATCTGACTATCATTGATACTCCT 540
Query 565 GGTTTTGTTCTCAAGGCTAAGAAAGGAGAGCCTGAAACTACACCTGATGAAATTCTGTCA 624
|| |||||||| ||||| ||| |||||||||||||||| ||||||||||||||| | ||
Sbjct 541 GGATTTGTTCTTAAGGCCAAGCAAGGAGAGCCTGAAACCACACCTGATGAAATTTTATCG 600
Query 625 ATGGTTAAGTCACTGGCTAGTCCTCCACATCGTATTCTCTTGTTCCTTCAGCAGAGTAGT 684
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 ATGGTCAAGTCACTGGCTAGTCCTCCACATCGCATTCTCTTGTTCCTTCAGCAGAGTAGT 660
Query 685 GTGGAGTGGTGCTCATCCTTGTGGTTAGATGCTGTTCGTGAGATTGATTCAAGCTTTCGG 744
||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 661 GTGGAATGGTGTTCATCCTTGTGGTTGGATGCAGTTCGTGAGATTGATTCAAGCTTTCGA 720
Query 745 AGGACTATTGTTGTTGTGTCCAAGTTTGATAATCGCCTTAAGGAATTTAGTGATCGCGGT 804
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 AGGACTATTGTTGTTGTCTCCAAGTTTGATAATCGCCTCAAGGAATTTAGTGATCGCGGT 780
Query 805 GAAGTTGATCGTTATCTGAGTGCTAGCGGATACCTTGGGGAGAACACTCGTCCTTATTTC 864
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGTGGATCGTTATCTGAGTGCTAGCGGATACCTTGGGGAGAACACTCGTCCTTATTTC 840
Query 865 GTGGCATTACCAAAAGACAGGAGCACTATCTCAAATGATGAATTTCGCCGACAAATATCT 924
|||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 GTGGCATTGCCAAAAGACCGGAGCACTGTCTCAAATGATGAATTTCGCCGACAAATATCT 900
Query 925 CAGGTGGACACTGAAGTTATAAGGCATTTACGGGAGGGAGTTAAGGGAGGATTTGATGAA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAGGTGGACACTGAAGTTATAAGGCATTTACGGGAGGGAGTTAAGGGAGGATTTGATGAA 960
Query 985 GAAAAATTCCGGTCCTGTATTGGTTTTGGGTCTTTAAGAGATTTCTTAGAGTCTGAGCTG 1044
|||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 961 GAAAAATTCCGGTCCTATATTGGTTTTGGATCATTAAGAGATTTCTTAGAGTCTGAGCTT 1020
Query 1045 CAGAAGAGATACAAGGAAGCTGCACCAGCAACACTAGCTTTGCTTGAAGAACGCTGCTCT 1104
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1021 CAGAAGAGATACAAGGAAGCTGCACCAGCAACACTAGCTTTGCTTGAACAGCGCTGCTCT 1080
Query 1105 GAGGTAACCGATGATATGCTGAGAATGGATATGAAAATCCAAGCTACTTCTGATGTTGCT 1164
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1081 GAGGTAACCGACGATATGCTGAGAATGGAGATGAAAATTCAAGCTACTTCTGATGTTGCT 1140
Query 1165 CATCTCAGAAAAGCGGCAATGCTATACACTGCTTCTATTAGCAATCATGTGGGAGCTTTG 1224
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1141 CATCTCAGAAAAGCGGCAATGCTATACACCGCTTCTATTAGCAATCATGTGGGGGCTTTG 1200
Query 1225 ATTGATGGAGCTGCAAATCCAGCACCTGAACAATGGGGGAAAACAACTGAAGAAGAACGT 1284
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 ATTGATGGAGCTGCAAATCCAGCACCTGAGCAATGGGGGAAAACAACTGAAGAAGAACGT 1260
Query 1285 GGCGAAAGTGGCATTGGAAGCTGGCCAGGTGTAAGTGTGGATATCAAGCCACCCAATGCC 1344
|| || |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 1261 GGTGAGAGTGGCATTGGAAGTTGGCCAGGCGTAAGTGTGGATATTAAGCCGCCCAATGCT 1320
Query 1345 GTTCTTAAACTCTATGGAGGAGCTGCTTTTGAAAGAGTGATTCATGAATTCCGTTGTGCA 1404
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 GTTCTTAAACTATATGGAGGAGCTGCTTTTGAAAGAGTGATTCATGAGTTCCGTTGTGCA 1380
Query 1405 GCCTACTCAATCGAGTGCCCTCCAGTGTCAAGAGAGAAGGTAGCAAACATTCTGCTTGCT 1464
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1381 GCCTACTCAATTGAGTGCCCTCCAGTGTCAAGAGAGAAGGTAGCAAACATTTTGCTAGCT 1440
Query 1465 CATGCTGGGCGTGGAGGTGGTAGAGGAGTAACAGAAGCTTCAGCAGAAATTGCTCGAACC 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CATGCTGGGCGTGGAGGTGGTAGAGGAGTAACAGAAGCTTCAGCAGAAATTGCTCGAACC 1500
Query 1525 GCTGCACGGTCATGGCTTGCTCCTCTTCTTGACACAGCCTGCGACAGACTTGCCTTTGTA 1584
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1501 GCTGCGCGGTCATGGCTCGCTCCTCTTCTTGACACAGCCTGCGACAGGCTTGCCTTTGTT 1560
Query 1585 TTAGGAAGTCTCTTTGAAATTGCTCTAGAAAGAAACCTGAACCAAAACTCAGAATATGAG 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TTAGGAAGTCTCTTTGAAATTGCTCTAGAAAGAAACCTGAACCAAAACTCAGAATATGAG 1620
Query 1645 AAGAAAACCGAAAATATGGATGGATACGTGGGTTTTCATGCCGCTGTACGGAACTGTTAC 1704
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1621 AAGAAAACCGAAAATATGGATGGATATGTGGGCTTTCATGCCGCTGTACGGAACTGTTAC 1680
Query 1705 AGCCGTTTTGTGAAGAATCTTGCAAAACAGTGTAAGCAATTAGTAAGACACCATCTTGAT 1764
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1681 AGCCGTTTTGTGAAGAATCTTGCGAAACAGTGTAAGCAATTAGTTAGACACCATCTTGAT 1740
Query 1765 TCAGTGACCAGTCCATATTCCATGGCGTGCTATGAGAATAACTACCACCAAGGAGGAGCT 1824
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1741 TCAGTGACCAGCCCATATTCCATGGCGTGCTATGAGAATGACTACCACCAAGGAGGAGCT 1800
Query 1825 TTTGGCGCTTATAACAAATTCAACCAAGCCTCACCTAATTCGTTTTGCTTCGAGCTCTCT 1884
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1801 TTTGGCTCTTATAACAAATTCAACCAAGCCTCAGGTAATTCGTTTTGCTTCGAGCTCTCT 1860
Query 1885 GATACCAGCCGTGATGAGCCAATGAAAGACCAAGAAAACATTCCTCCTGAGAAGAACAAT 1944
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1861 GATACCAGTCGTGATGAGCCAATGAAAGATCAAGAAAACATTCCTCCTGAGAATAATAAT 1920
Query 1945 GGCCAAGAGACAACACCAGGAAAAGGAGGGGAAAGCCACATAACAGTCCCTGAGACTCCT 2004
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1921 GGCCAAGAGACAACATCAGGAAAAGGAGGGGAAAGCCACATAACAGTTCCTGAGACGCCT 1980
Query 2005 TCACCGGACCAACCATGTGAAATAGTGTATGGTTTGGTAAAGAAAGAAATTGGAAATGGT 2064
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1981 TCACCGGACCAACCTTGTGAGATAGTGTATGGTTTGGTAAAGAAAGAAATTGGAAATGGT 2040
Query 2065 CCTGATGGTGTTGGAGCTAGAAAAAGAATGGCGAGAATGGTTGGAAACAGGAACATAGAG 2124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2041 CCTGATGGTGTTGGAGCTAGAAAAAGAATGGCGAGAATGGTGGGAAACAGGAACATAGAG 2100
Query 2125 CCATTTAGAGTTCAGAATGGTGGGCTTATGTTTGCTAATGCAGATAACGGAATGAAATCA 2184
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 2101 CCATTTAGAGTTCAGAATGGTGGGCTTATGTTTGGTAACGCGGATAACGGAATGAAATCA 2160
Query 2185 AGCTCTGCTTACTCTGAGATATGTTCATCAGCCGCACAACATTTTGCTAGAATTCGCGAA 2244
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2161 AGCTCTGCTTACTCTGAGATATGTTCATCAGCTGCACAACATTTTGCTAGAATACGCGAA 2220
Query 2245 GTGCTTGTCGAAAGAAGCGTAACATCAACTCTAAACTCAGGATTTCTAACTCCTTGCCGA 2304
|| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 2221 GTTCTTGTCGAAAGAAGCGTAACATCGACTCTAAACTCAGGGTTTCTAACACCTTGCCGA 2280
Query 2305 GACAGACTAGTGGTGGCACTTGGATTGGATCTATTTGCAGTGAATGACGACAAGTTCATG 2364
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2281 GACAGACTAGTGGTTGCACTTGGATTGGATCTATTTGCAGTAAATGACGATAAGTTCATG 2340
Query 2365 GACATGTTCGTTGCTCCTGGAGCCATTGTGGTACTACAAAACGAACGCCAACAGCTTCAG 2424
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 2341 GACATGTTCGTTGCTCCTGGAGCCATTGACGTACTACAGAACGAACGTCAACAGCTTCAG 2400
Query 2425 AAACGTCAAAAGATTCTTCAATCTTGCTTGACTGAGTTTAAAACGGTGGCTCGTTCTCTA 2484
|||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 2401 AAACGTCAGAAGATTCTTCAATCTTGCTTGACTGAATTCAAAACCGTGGCTCGTTCTCTA 2460
Query 2485 TAATGAAATGAACGATCATTGTCTCTATGATGTGTTCTCTTCTC 2528
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2461 TGATGAAATGAATGATCATTGTCTCTATGATGTGTTCTCTTCTC 2504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99720261410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5