BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53160.2
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474435 jgi|Araly1|474435|fgenesh2_kg.1__4389__AT1G53160.2 1064 0.0
> Ahg474435 jgi|Araly1|474435|fgenesh2_kg.1__4389__AT1G53160.2
Length=851
Score = 1064 bits (576), Expect = 0.0
Identities = 776/868 (89%), Gaps = 31/868 (4%)
Strand=Plus/Plus
Query 1 CATTGCTTAACCTATTAGAGTTTCCTTCCTCCAACAAACCATCTTTAT-AAGACTCCAAA 59
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||
Sbjct 1 CATTGCTTAACCTATTAGAGTTTCTTTTCTCCAACAAACCATCTTT-TCAAGACTCCAAA 59
Query 60 ATGGAGGGTAAGAGATCACAAGGACAAGGTTACATGAAAAAGAAGTCTTACCTTGTGGAA 119
||||||||||| ||| ||||||||||||| ||| ||||||| |||||||||| |||||||
Sbjct 60 ATGGAGGGTAAAAGAACACAAGGACAAGGCTACTTGAAAAAAAAGTCTTACCGTGTGGAA 119
Query 120 GAAGATATGGAGACTGATACGGATGAAGAAGAGGAAGTAGGTAGGGATAGAGTTAGAGGG 179
||||| ||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 120 GAAGAAATGGAGAATGATACGGATGGAGAAGAGGAAGTTGGTCGGGATAGAGTTAGAGGG 179
Query 180 TCTAGAGGTAGCATCAATCGTGGTGGCTCGTTGCGGCTTTGCCAAGTAGATAGATGCACA 239
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTAGTGGCAGCATCGATCGTGGTGGCTCGTTGCGGCTTTGCCAAGTAGATAGATGCACA 239
Query 240 GCTGATATGAAAGAGGCAAAACTGTATCACCGGAGACACAAAGTGTGTGAAGTTCATGCA 299
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACCGATATGAAAGAGGCAAAACTGTATCACCGGAGACACAAAGTGTGTGAAGTTCATGCA 299
Query 300 AAGGCATCTTCTGTCTTTCTCTCAGGACTTAACCAACGCTTTTGTCAACAATGCAGTAGG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 AAGGCATCTTCTGTCTTTCTCTCAGGACTTAACCAACGCTTTTGTCAACAATGCAGCAGG 359
Query 360 TTTCATGACCTCCAAGAGTTTGATGAAGCTAAGAGAAGTTG-CAGGAGGCGCTTAGCTGG 418
|||||||| ||||||||||||||||||| || |||||||| | | ||||||||||||||
Sbjct 360 TTTCATGAGATCCAAGAGTTTGATGAAGCAAAAAGAAGTTGTC-GTAGGCGCTTAGCTGG 418
Query 419 ACACAATGAGCGAAGAAGGAAGAGCTCTGGTGAGAGTACTTAT-GGAGAAGGATCAGGTC 477
||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 419 ACACAATGAAAGAAGAAGGAAGAGCTCTGGTGAGAGTACTT-TCGGAGAAGGATCAGGTC 477
Query 478 GGAGAGGAATCAATGGTCAGGTGGTGATGCAGAATCAAGAAAGATCAAGGGTAGAGATGA 537
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 478 GGAGAGGAATCACTGGTCAGGTG---ATCCAGAATCAAGAAAGATCAAGGGTAGAGATGA 534
Query 538 CACTTCCTATGCCAAACTCATCATTCAAGCGACCACAGATTAGATAGAGAAGCTATACGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CACTTCCTATGCCAAACTCATCATTCAAGCGACCACAGATTAGATAGAGAAGCTATACGA 594
Query 598 GTAAGGAGTGTGACTTATCCA-AAAGCACAGGGAA--ACTA----CTAACCAAAAGCCAC 650
| |||||||||| |||||||| ||| ||||||| | |||| |||||| ||||||||
Sbjct 595 GCAAGGAGTGTGTCTTATCCAGAAA-CACAGGGGACTACTAAGTACTAACCGAAAGCCAC 653
Query 651 GGTCACTCTGAAGTTTCAGAGCCACGAAGGAGAT-ATATCATCCTAGCTTTTCCTTGCCA 709
||||||| |||||||| ||| |||| || | || | || | | | ||| || | |
Sbjct 654 GGTCACTTTGAAGTTTGAGAACCACAAATTAAATGAGAT-A-CTTTGCTGAAGATTTC-A 710
Query 710 -A-CAT-AGTAGTAGAATAGAATATTTGAATAAACACCTACCATTATTAGTAAATCGTTG 766
| | | |||| ||||||| || |||||||||| || | |||||||| ||||||| ||||
Sbjct 711 TATCTTTAGTA-TAGAATACAAGATTTGAATAATCAACGACCATTATCAGTAAATTGTTG 769
Query 767 AGAGTAGATTATAGTGGAAGCAAACCTTTCAGGGTCCATCACTTGCTATGATGAGAGACT 826
|| ||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 770 AG--TAGATTATAGTAGAAGCAAACCTTCCAGGGTCCATTACTTGCTATGATGAGAAACT 827
Query 827 CCTTAGACGTCATCAATAATTATCTTAT 854
|| | |||||||||||||||| ||||
Sbjct 828 --TT-G-CGTCATCAATAATTATTTTAT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5