BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53163.1 Length=1025 Score E Sequences producing significant alignments: (Bits) Value Ahg474437 jgi|Araly1|474437|fgenesh2_kg.1__4391__AT1G53163.1 1293 0.0 > Ahg474437 jgi|Araly1|474437|fgenesh2_kg.1__4391__AT1G53163.1 Length=925 Score = 1293 bits (700), Expect = 0.0 Identities = 859/934 (92%), Gaps = 18/934 (2%) Strand=Plus/Plus Query 15 AAGAAACGTTTTGAAGATGGAGGATAACCGGA-AAACTACCCCAAACTCCGGCGAGACCA 73 ||| ||||||||||||||||||||| ||| | ||| ||||||||||||||| ||||||| Sbjct 1 AAGTAACGTTTTGAAGATGGAGGATGACC-AACAAAGTACCCCAAACTCCGGTGAGACCA 59 Query 74 AACCAGAGACGTCCCTGGAGACGTCACT-ATCATCAGACTTCGAGTTTGGATCATTGACT 132 | || || |||||| ||||||| ||| | | |||| ||||| |||||||||||||||||| Sbjct 60 AGCCGGAAACGTCCGTGGAGACATCA-TCACCATCGGACTTTGAGTTTGGATCATTGACT 118 Query 133 CCCACATCTCCATCACAAGACCCCTTCTCGGAAAATTCTCCCGCTGATCATCTTTTCCTC 192 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 119 CCCTCATCTCCATCACAAGACCCCTTCTCGGAAAATTCTCCCGCCGATCATCTTTTTCTC 178 Query 193 AACGGCCGTCTATTACCACACTCTTTTCCAACGAGCACGATAACGACACGTTCAGTGTCA 252 ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| Sbjct 179 AACGGCCGTCTATTACCGCACTCTTTTCCGACGAGCACGACGACGACACGTTCAGTGTCA 238 Query 253 CGTACTACCAGCGAAAACACTTTCCGGAGCGATAGTTGGAGCAGCCGAAGCAGTGATAGT 312 ||||| ||||||||||||||||| |||||| |||||| |||||||||||||||| |||| Sbjct 239 CGTACGACCAGCGAAAACACTTTTCGGAGCAATAGTTCGAGCAGCCGAAGCAGTTATAGC 298 Query 313 AGCAGCCCGACATCTTACACTCCAAGAACAAGCACTTGTAATATCTTCAAGATCACAAGT 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 299 AGCAGCCCGACATCTTACACTCCAAGAACAAGCACTTGTAATATCTTCAAGATCACGAGT 358 Query 373 TCTAGTACCGGTCATGGGAAAGAGACTAATATAACATGTTTTGGTACTCGGTCCGAAGAG 432 ||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 359 TCTAGTACCGGACATGTGAAAGAGACTAATTTAACATGTTTTGGTACTCGGTCCGAAGAG 418 Query 433 ATTATGTGCCTAAGGCCCGCAACTTCTTCAAAGAAAACAAACACTTGCATCAGCAAAGAA 492 |||||||| || ||||||| |||||||| ||||||||||||||||||| |||||||||| Sbjct 419 ATTATGTGTCTGAGGCCCGTAACTTCTTTGAAGAAAACAAACACTTGCAGCAGCAAAGAA 478 Query 493 TACTATCACAAACCATCGTTAATATTGGATCTAAAGAAGAGACCACCGGTGGAAAATGGT 552 |||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 479 TACTATAACAAGCCATCGTTAATATTGGATCTAAAGAAGAGACCACCGATGAAAAATGGT 538 Query 553 AAAGCCGTAAA--C---A-CGACAAATAAGGTTTCGTATTTGCCGCAATGCAAGAGGAAG 606 ||||||||||| | | | ||||||||||||||||||||||||||||||||||||||| Sbjct 539 AAAGCCGTAAATACTTCAACCACAAATAAGGTTTCGTATTTGCCGCAATGCAAGAGGAAG 598 Query 607 AAAGCGACGGAGATTGTAACGGCTCAGCTTTACGGGTCGTATTCACGGCGGTGGCAGCAT 666 || |||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 599 AAGGCGACGGAGATTGTGACAGCGCAGCTTTACGGGTCGTATTCACGGCGGTGGCAGCAT 658 Query 667 ATAACTCCGGTCTTTAAAAGAGAAGGGTCGGTGAAAAGTA-AGGGAGGAGGGATTAAGGT 725 |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| Sbjct 659 ATAACTCCGGTCTTTAAAAGAGAAGGATCGGTGAAAAGTAGAGG-AGGAGGGATTAAGGT 717 Query 726 CGGTggacggaaaaagaagtcgacgaggaggaagaagccgaagaaggcggaggagagaag 785 |||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||| Sbjct 718 CGGTGGACGGAAGAAGAAGACGACGAGGAGGAAAAAGCCAAAGAAGGCGGAGGAGAGAAG 777 Query 786 aggaaTAAGTAGTAAGTTAATGAAGTGGTGGAAGAGAATTCTAAAGGCGGTGGTGTTTGC 845 |||||| | |||||||| ||||||||||||||||| ||| ||||||||||||||||||| Sbjct 778 AGGAAT--G-AGTAAGTTGATGAAGTGGTGGAAGAGGATTTTAAAGGCGGTGGTGTTTGC 834 Query 846 TTGCAGGGAGTGTCATGCAATGGAGCCTCATCAGATACTTGTAAATGATGATGCTGGTGT 905 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 835 TTGCAGGGAGTGTCATGCAATGGAGCCTCA---GATACTTGTAAATGATGATGCTGATGT 891 Query 906 GAAAAAGAAGATTATTAAATGTCCATAATCAAAA 939 | |||||||||| | ||||||||||||||||||| Sbjct 892 GGAAAAGAAGATAACTAAATGTCCATAATCAAAA 925 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38122917000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5