BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53163.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474437 jgi|Araly1|474437|fgenesh2_kg.1__4391__AT1G53163.1 1293 0.0
> Ahg474437 jgi|Araly1|474437|fgenesh2_kg.1__4391__AT1G53163.1
Length=925
Score = 1293 bits (700), Expect = 0.0
Identities = 859/934 (92%), Gaps = 18/934 (2%)
Strand=Plus/Plus
Query 15 AAGAAACGTTTTGAAGATGGAGGATAACCGGA-AAACTACCCCAAACTCCGGCGAGACCA 73
||| ||||||||||||||||||||| ||| | ||| ||||||||||||||| |||||||
Sbjct 1 AAGTAACGTTTTGAAGATGGAGGATGACC-AACAAAGTACCCCAAACTCCGGTGAGACCA 59
Query 74 AACCAGAGACGTCCCTGGAGACGTCACT-ATCATCAGACTTCGAGTTTGGATCATTGACT 132
| || || |||||| ||||||| ||| | | |||| ||||| ||||||||||||||||||
Sbjct 60 AGCCGGAAACGTCCGTGGAGACATCA-TCACCATCGGACTTTGAGTTTGGATCATTGACT 118
Query 133 CCCACATCTCCATCACAAGACCCCTTCTCGGAAAATTCTCCCGCTGATCATCTTTTCCTC 192
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 119 CCCTCATCTCCATCACAAGACCCCTTCTCGGAAAATTCTCCCGCCGATCATCTTTTTCTC 178
Query 193 AACGGCCGTCTATTACCACACTCTTTTCCAACGAGCACGATAACGACACGTTCAGTGTCA 252
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 179 AACGGCCGTCTATTACCGCACTCTTTTCCGACGAGCACGACGACGACACGTTCAGTGTCA 238
Query 253 CGTACTACCAGCGAAAACACTTTCCGGAGCGATAGTTGGAGCAGCCGAAGCAGTGATAGT 312
||||| ||||||||||||||||| |||||| |||||| |||||||||||||||| ||||
Sbjct 239 CGTACGACCAGCGAAAACACTTTTCGGAGCAATAGTTCGAGCAGCCGAAGCAGTTATAGC 298
Query 313 AGCAGCCCGACATCTTACACTCCAAGAACAAGCACTTGTAATATCTTCAAGATCACAAGT 372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 AGCAGCCCGACATCTTACACTCCAAGAACAAGCACTTGTAATATCTTCAAGATCACGAGT 358
Query 373 TCTAGTACCGGTCATGGGAAAGAGACTAATATAACATGTTTTGGTACTCGGTCCGAAGAG 432
||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 TCTAGTACCGGACATGTGAAAGAGACTAATTTAACATGTTTTGGTACTCGGTCCGAAGAG 418
Query 433 ATTATGTGCCTAAGGCCCGCAACTTCTTCAAAGAAAACAAACACTTGCATCAGCAAAGAA 492
|||||||| || ||||||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct 419 ATTATGTGTCTGAGGCCCGTAACTTCTTTGAAGAAAACAAACACTTGCAGCAGCAAAGAA 478
Query 493 TACTATCACAAACCATCGTTAATATTGGATCTAAAGAAGAGACCACCGGTGGAAAATGGT 552
|||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 479 TACTATAACAAGCCATCGTTAATATTGGATCTAAAGAAGAGACCACCGATGAAAAATGGT 538
Query 553 AAAGCCGTAAA--C---A-CGACAAATAAGGTTTCGTATTTGCCGCAATGCAAGAGGAAG 606
||||||||||| | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAAGCCGTAAATACTTCAACCACAAATAAGGTTTCGTATTTGCCGCAATGCAAGAGGAAG 598
Query 607 AAAGCGACGGAGATTGTAACGGCTCAGCTTTACGGGTCGTATTCACGGCGGTGGCAGCAT 666
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGGCGACGGAGATTGTGACAGCGCAGCTTTACGGGTCGTATTCACGGCGGTGGCAGCAT 658
Query 667 ATAACTCCGGTCTTTAAAAGAGAAGGGTCGGTGAAAAGTA-AGGGAGGAGGGATTAAGGT 725
|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 659 ATAACTCCGGTCTTTAAAAGAGAAGGATCGGTGAAAAGTAGAGG-AGGAGGGATTAAGGT 717
Query 726 CGGTggacggaaaaagaagtcgacgaggaggaagaagccgaagaaggcggaggagagaag 785
|||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 718 CGGTGGACGGAAGAAGAAGACGACGAGGAGGAAAAAGCCAAAGAAGGCGGAGGAGAGAAG 777
Query 786 aggaaTAAGTAGTAAGTTAATGAAGTGGTGGAAGAGAATTCTAAAGGCGGTGGTGTTTGC 845
|||||| | |||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 778 AGGAAT--G-AGTAAGTTGATGAAGTGGTGGAAGAGGATTTTAAAGGCGGTGGTGTTTGC 834
Query 846 TTGCAGGGAGTGTCATGCAATGGAGCCTCATCAGATACTTGTAAATGATGATGCTGGTGT 905
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 835 TTGCAGGGAGTGTCATGCAATGGAGCCTCA---GATACTTGTAAATGATGATGCTGATGT 891
Query 906 GAAAAAGAAGATTATTAAATGTCCATAATCAAAA 939
| |||||||||| | |||||||||||||||||||
Sbjct 892 GGAAAAGAAGATAACTAAATGTCCATAATCAAAA 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5