BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53165.3
Length=2619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474438 jgi|Araly1|474438|fgenesh2_kg.1__4392__AT1G53165.1 3814 0.0
Ahg929309 jgi|Araly1|929309|scaffold_301766.1 1716 0.0
> Ahg474438 jgi|Araly1|474438|fgenesh2_kg.1__4392__AT1G53165.1
Length=2547
Score = 3814 bits (2065), Expect = 0.0
Identities = 2449/2619 (94%), Gaps = 87/2619 (3%)
Strand=Plus/Plus
Query 16 aaaaatgaaaaattgaataatcaaaatcgagaaaaCTTGATAATCGAAGTTCTTGTTCAT 75
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1 AAAAATGAAAAATTGAATAATCAAAATCGAGAAAACTTCATAATCGAAGTTC----T--T 54
Query 76 CTTCTCGATCTCTTGGTGCTC----GAGA-AGCATTGGATAGAGAATTTTCTTGGGAAGG 130
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 55 CTTCTCGATCTCTTGGTGCTCGAGAGAGAGAGCATTGGATAGAGAATTTTCTTGGGAAAG 114
Query 131 TGATAGAACAAAAGTAAGATCTG--TATATATTCAACGCGTCTTCTTCGTTCAACTATAT 188
| |||| | |||| ||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 115 TAATAG-A-AAAACTAAGATCTGTATATATATTCGACGCGTCTTCTTCGTTCACCTATA- 171
Query 189 AAG-AGGGGGAA-GAAGGTGGT-TTTAGTTGTGGAAATGGATGATGTTGCTGGTTTACAA 245
| | | ||| | | | | ||| |||||||||||||||||||||||||||||||||
Sbjct 172 AGGTAATCTGAATG-CGATCCTGTTT-GTTGTGGAAATGGATGATGTTGCTGGTTTACAA 229
Query 246 GAGGCAGCTGGAACCAGATTTAGCCAGTTTGAGCTAATCGGAAGAGGATCGTTTGGTGAT 305
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 230 GAGGCAGCTGGAACCAGATTTAGCCAGTTTGAGTTAATCGGAAGAGGATCGTTTGGTGAT 289
Query 306 GTCTACAAAGCGTTTGATACGGAGCTTAACAAAGACGTTGCCATTAAAGTTATTGATCTG 365
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 290 GTCTACAAAGCGTTTGATACGGTGCTTAACAAAGATGTTGCCATTAAAGTTATTGATTTG 349
Query 366 GAAGAATCAGAAGACGAGATTGAAGATATACAGAAGGAAATTTCAGTATTGTCACAATGC 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GAAGAATCAGAAGACGAGATTGAAGATATACAGAAGGAAATTTCAGTATTGTCACAATGC 409
Query 426 CGTTGCCCATATATTACCGAATACTATGGTTCTTACCTTCACCAGACCAAGTTATGGATC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CGTTGCCCATATATTACCGAATACTATGGTTCTTACCTTCACCAGACCAAGTTATGGATC 469
Query 486 ATCATGGAATATATGGCTGGTGGCTCAGTTGCTGACCTTCTTCAACCGGGTAATCCATTG 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATCATGGAATATATGGCTGGTGGCTCAGTTGCTGACCTTCTTCAACCGGGTAATCCATTG 529
Query 546 GATGAAATTTCAATTGCTTGTATTACGCGCGACCTACTTCATGCTGTTGAATATCTCCAT 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GATGAAATTTCAATTGCTTGTATTACGCGCGACCTACTTCATGCTGTTGAATATCTCCAC 589
Query 606 GCTGAGGGAAAAATCCACAGAGATATTAAAGCCGCCAATATTTTGTTGAGTGAGAACGGT 665
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 590 GCTGAGGGAAAAATCCACAGAGATATTAAAGCCGCTAATATTTTGTTGAGTGAGAATGGT 649
Query 666 GATGTTAAGGTTGCAGACTTTGGTGTTTCTGCACAATTAACCCGGACTATATCAAGGCGA 725
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 650 GATGTTAAGGTCGCGGACTTTGGTGTTTCTGCACAATTAACCCGGACAATATCAAGGAGA 709
Query 726 AAGACATTTGTAGGAACACCATTTTGGATGGCACCAGAAGTGATTCAGAACTCCGAAGGT 785
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 AAGACATTTGTGGGAACACCATTTTGGATGGCACCAGAAGTGATTCAGAACTCAGAAGGG 769
Query 786 TATAATGAGAAGGCAGATATATGGTCTCTTGGAATAACAATGATAGAGATGGCAAAAGGA 845
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 770 TATAATGAGAAGGCAGATATATGGTCTCTTGGAATAACAATGATCGAGATGGCCAAAGGA 829
Query 846 GAACCTCCCCTTGCTGACCTTCATCCTATGAGAGTGCTTTTTATCATTCCCCGGGAAAGC 905
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GAACCTCCACTTGCTGACCTTCATCCTATGAGAGTGCTTTTTATCATTCCCCGGGAAAGC 889
Query 906 CCTCCTCAGTTAGATGAGCATTTTTCACGTCCTTTGAAGGAATTTGTTTCGTTCTGCTTG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CCTCCTCAGTTAGATGAGCATTTTTCACGTCCTTTGAAGGAATTTGTTTCGTTCTGCTTG 949
Query 966 AAAAAGGCTCCGGCTGAGAGACCAAATGCCAAAGAACTTCTCAAACATAGATTTATAAAG 1025
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 950 AAAAAGGCTCCTGCTGAGAGACCAAGTGCCAAAGAACTTCTCAAACATAGATTTATAAAG 1009
Query 1026 AATGCTAGGAAAAGCCCGAAACTACTTGAAAGAATAAGAGAGCGGCCAAAATACCAAGTA 1085
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1010 AATGCTAGGAAAAACCCGAAACTTCTTGAAAGAATAAGAGAGCGGCCAAAATACCAAGTA 1069
Query 1086 AAAGAGGACGAAGAGATTCCAACAAACGGTCCAAAAGCTCCGGCT-GAATCATCTGGGAC 1144
|||||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||
Sbjct 1070 AAAGAGGACGAAGAGATTCCAACAAACGGTCCAAAATCTCCCG-TGGAATCATCTGGGAC 1128
Query 1145 TGTTAGAGTGGCTAAAGATGAGAGAGGCCAGGGAACTTCTGGAACTAGGTTGGATAAATG 1204
||||||||||||| ||||||||| ||||||||||| | | | ||| ||
Sbjct 1129 TGTTAGAGTGGCTGGAGATGAGAGGGGCCAGGGAAC-T-T----C-----TGG---AA-- 1172
Query 1205 GTTGGATAAATGTTTTCAGGTAAAAACTGTCAGAAATGCGGGGTGGGACTTTAGCATTGG 1264
| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1173 -----CT--A-GTTTTCAGGTAAAAACTGTCAGAAATGCGGGGTGGGACTTTAGCTTTGG 1224
Query 1265 GGGTTCGCAGGGTGCTGGAACTGTTCGAGCTTTAAAACCTCCACAAGCCAGGGAAAGGCG 1324
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GGGTTCACAGGGTGCTGGAACTGTTCGAGCTTTAAAACCTCCACAAGCCAGGGAAAGGCG 1284
Query 1325 CCAAGAAGTTAATTCTAATCAGACTTCTCAAAAAACATCACGAACCAGTGGTAGTCAATT 1384
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1285 CCAAGAAGTTAGTTCTAATCAGACTTCTCAAAAAACATCACGAGCCAGTGGTAGTCAATT 1344
Query 1385 GTCATCCACTTTTGGTGTCCCTGAAATCTCTGAAGGAGGTTTTAATAAAAGAGATTCTTA 1444
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1345 GTCATCCACTTTTGGTGTCCATGAAATCTCTGAAGGAGGTTTTATTAAAAGAGATTCTTA 1404
Query 1445 TCAGAATGACTATCAAGAAGAAGATGATTCAAGTGGTTCTGGAACTGTTGTCATAAGATC 1504
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TCAGAATAACAATCAAGAAGAAGATGATTCAAGTGGTTCTGGAACTGTTGTCATAAGATC 1464
Query 1505 GCCGAGAAGCTCTCAGTCATCTTCAATGTTTCGTGATCAAAGCTCTGGGTCTACCAGGTA 1564
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1465 TCCGAGAAGCTCTCAGCCATCTTCAATGTTTCGTGATCAAAGCTCTGGGTCTAACAGGTA 1524
Query 1565 TACGTCTTTTGATGATGCTTCTACAAGTGGAACAGTTGTTGTCCGTGGGCAGAATGATGA 1624
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1525 TACGTCTTTTGATGATGCTTCTACGAGTGGAACAGTCGTTGTCCGTGGGCAGAATGATGA 1584
Query 1625 TTCTGGATCACCTCGAACACCGAGATCTAGACTAGGGCTTCAAGAAAGAAGTTCCAGTGC 1684
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1585 TTCTGGATCACCTCGAACACCAAGATCTAGACTAGGGCTTCAAGAAAGAAGTTCCAGTGC 1644
Query 1685 CTCAGAGGATAGCATCTCAAATCTTGCAGAGGCAAAATTAGCACTTGAAGCAGGTTTCAG 1744
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 CTCAGAAGATAGCATCTCAAATCTTGCAGAGGCAAAATTAGCACTTGAAGCAGGTTTCAG 1704
Query 1745 AAGAGGGAATGCTAGGGAAAGACTTGGTAATGGGAAGGTTAACAAAAGAAGAGAGCAAGC 1804
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1705 AAGAGGGAATGCTAGGGAAAAACTTGGTAATGGGAAGGTTAACAAAAGAAGAGAACAAGC 1764
Query 1805 AACAGATAATTCTGATTACTTGAGAAATTCCCGCGATCATTCTGATAAACAAAGACCAGT 1864
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1765 AACAGATAATTCTGATCACTTGAGAAATTCCCGCGATCATTCTGATAAACAAAAACCAGT 1824
Query 1865 CATGAGATCACAACAAGTGAGTGATGATGAAGAAGATGACTCCAAATTGGCATCATTGTC 1924
||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1825 CATAAGATCACAACAAGTGAGTGATGAT---GAAGATGACTCCAAATTAGCATCATTGTC 1881
Query 1925 TGCATCATTGTCACTATTGCTATTACCATCCCTAAAAGAGGCTGTTGGGGGTGACGACTC 1984
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1882 TGCATCATTGTCACTATTGCTATTACCATCCCTAAAAGAGGCTGTCGGGGGTGACGACTC 1941
Query 1985 AAAAGGAACTATTGGACATAGAGTTTCGAGATCCTTAGTTAAAATGGAACGCGAAAAGCC 2044
||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1942 AAAAGGATCTGTTGGACATAGAGTTTCGAGATCCTTAGTGAACATGGAACGCGAAAAGCC 2001
Query 2045 TGGTTCTTCTGAAGCTTTTATTGCCAAACTGATCGAACAGTTGGGAAGTACAAAGGAAGT 2104
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2002 TGGTTCTTCTGAAGCTTTTATTGCCAAACTTATCGAACAGTTGGGAAGTACAAATGAAGT 2061
Query 2105 GTCAGTGAAAGAAGTGCAAGACATGGCGATCCGTGTGTTCGCTAAGACAATGAACAATGA 2164
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 GTCAGTGAAAGAGGTGCAAGACATGGCGATCCGTGTGTTCGCTAAGACAATGAACAATGA 2121
Query 2165 TGCAGAGAACAAAAGAAAGCAAGCTAGCAAAGAATTTAGTTCTAATGCAAACTTTAGTCC 2224
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2122 TGCAGAGAACAAAAGAAAGCAAGCTAGCAAAGAATTTAGTTCCAATGCAAACTTTAGTCC 2181
Query 2225 ACTTGCAAGATTCTTATTCTCAAGATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAG 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182 ACTTGCAAGATTCTTATTCTCAAGATGGCTAGGTCAAACATCGCGTGATCTTAACCAAAG 2241
Query 2285 TTGAGAAACTCACAGAAGACAGAACATAAGAATGTTGTTTGTGTGTCTCTTACATTGATT 2344
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2242 TTGAGACACGCACAGAAGACAGAACATAAGAATGTTGTTTGTGTGTCTTTTACATTGATT 2301
Query 2345 TGATGCATTGAATTTTGGTATTTATGTGTATAAttttttt-tCAGAAAAAGGGTGTATTT 2403
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2302 TGATGCATTGAATTTTGGTATTTATGTGTATAAATTTTTCATCAGAAAAAGGGTGTATTT 2361
Query 2404 ATAAAATTTTAAGttt-ttttt-tttttaattggcattttctaccttattttggcctttt 2461
||||| |||||||||| ||||| ||||| || ||| || | || ||||
Sbjct 2362 ATAAA-TTTTAAGTTTCTTTTTCTTTTT--TTA--ATTGTC-A--TT-TTTT-------- 2404
Query 2462 tagttttatctttatttttccttcctggttttttttaGAGAGGAAGCATATTCTTAGTTG 2521
||||||||||||||||| |||||||||||||||| | | | ||||||||
Sbjct 2405 -AGTTTTATCTTTATTTTCCCTTCCTGGTTTTTTT-A-----------T-T-CTTAGTTG 2449
Query 2522 TATAATTAAGGGCTTGCCTTTTATCT-GTGATAATATGTAATCACTCTTACCATTTCATT 2580
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2450 TATAATTAAGGGCTTGCCTTT-ATCTTGTGATAATATGTAATCACTCTTACCATTTCATT 2508
Query 2581 CATATACCAGTACTCATAATCATTATTTTTGTTTTTCTT 2619
|||| |||||||||||| |||||||||||||||| ||||
Sbjct 2509 CATAAACCAGTACTCATTATCATTATTTTTGTTTCTCTT 2547
> Ahg929309 jgi|Araly1|929309|scaffold_301766.1
Length=2122
Score = 1716 bits (929), Expect = 0.0
Identities = 1744/2125 (82%), Gaps = 105/2125 (5%)
Strand=Plus/Plus
Query 215 TGTGGAAATGGATGATGTTGCTGGTTTACAAGAGGCAGCTGGAACCAGATTTAGCCAGTT 274
|||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 15 TGTGGAGATGGACGATGTTGCGGGTTTACAAGAGGCAGCTGGAGCCAGATTTAGCCACAT 74
Query 275 TGAGCTAATCGGAAGAGGATCGTTTGGTGATGTCTACAAAGCGTTTGATACGGAGCTTAA 334
|||| | || |||||||| || |||||||||||||| ||||||||||||| ||| || ||
Sbjct 75 TGAGTTGATTGGAAGAGGTTCTTTTGGTGATGTCTATAAAGCGTTTGATAAGGACCTCAA 134
Query 335 CAAAGACGTTGCCATTAAAGTTATTGATCTGGAAGAATCAGAAGACGAGATTGAAGATAT 394
||||| |||||||||||||| || || ||||||||||||||||| ||||| ||||||||
Sbjct 135 TAAAGAAGTTGCCATTAAAGTAATCGACCTGGAAGAATCAGAAGATGAGATCGAAGATAT 194
Query 395 ACAGAAGGAAATTTCAGTATTGTCACAATGCCGTTGCCCATATATTACCGAATACTATGG 454
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 195 TCAGAAGGAAATTTCAGTATTGTCACAATGCCGTTGCCCATATATCACCGAATACTATGG 254
Query 455 TTCTTACCTTCACCAGACCAAGTTATGGATCATCATGGAATATATGGCTGGTGGCTCAGT 514
|||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 255 TTCTTACCTTCATCAGACCAAGTTGTGGATCATTATGGAATATATGGCCGGTGGCTCTGT 314
Query 515 TGCTGACCTTCTTCAACCGGGTAATCCATTGGATGAAATTTCAATTGCTTGTATTACGCG 574
|||||| ||||||||| | |||||||||||||||||| ||||| |||||||| || ||
Sbjct 315 TGCTGATCTTCTTCAATCTAGTAATCCATTGGATGAAACATCAATCGCTTGTATCACACG 374
Query 575 CGACCTACTTC-ATGCTGTTGAATATCTCCATGCTGAGGGAAAAATCCACAGAGATATTA 633
||| || |||| | |||||||||||||| ||| ||||||||| ||||||||||| || |
Sbjct 375 CGATCTGCTTCTA-GCTGTTGAATATCTGCATAATGAGGGAAAGATCCACAGAGACATCA 433
Query 634 AAGCCGCCAATATTTTGTTGAGTGAGAACGGTGATGTTAAGGTTGCAGACTTTGGTGTTT 693
|||| || ||||||||||||| ||||| || ||||||||||| || ||||||||||| |
Sbjct 434 AAGCTGCTAATATTTTGTTGACCGAGAATGGCGATGTTAAGGTGGCGGACTTTGGTGTGT 493
Query 694 CTGCACAATTAACCCGGACTATATCAAGGCGAAAGACATTTGTAGGAACACCATTTTGGA 753
|||| || |||| ||||| |||||||| | ||||| ||||||||||| ||||||||||
Sbjct 494 CTGCTCAGCTAACGCGGACAATATCAAGAAGGAAGACTTTTGTAGGAACCCCATTTTGGA 553
Query 754 TGGCACCAGAAGTGATTCAGAACTCCGAAGGTTATAATGAGAAGGCAGATATATGGTCTC 813
||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |
Sbjct 554 TGGCACCAGAAGTGATTCAGAACTCAGAAGGGTATAACGAGAAGGCAGATATTTGGTCGC 613
Query 814 TTGGAATAACAATGATAGAGATGGCAAAAGGAGAACCTCCCCTTGCTGACCTTCATCCTA 873
| ||||||||| | || |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 614 TCGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCTGACCTTCATCCCA 673
Query 874 TGAGAGTGCTTTTTATCATTCCCCGGGAAAGCCCTCCTCAGTTAGATGAGCATTTTTCAC 933
|||||||||||||||||||||| || |||| || ||||||||||||||||||||||| |
Sbjct 674 TGAGAGTGCTTTTTATCATTCCTCGAGAAAATCCACCTCAGTTAGATGAGCATTTTTCCC 733
Query 934 GTCCTTTGAAGGAATTTGTTTCGTTCTGCTTGAAAAAGGCTCCG-GCTGAGAGACCAAAT 992
|||| | ||||| |||||||| || |||||||| |||| ||| ||||||||||||| |
Sbjct 734 GTCCAGTAAAGGAGTTTGTTTCATTATGCTTGAAGAAGG-TCCCTGCTGAGAGACCAAGT 792
Query 993 GCCAAAGAACTTCTCAAACATAGATTTATAAAGAATGCTAGGAAAAGCCCGAAACTACTT 1052
|||||||||||| | ||||| |||||||| ||||||||||| ||||| |||||||| |||
Sbjct 793 GCCAAAGAACTTATTAAACACAGATTTATTAAGAATGCTAGAAAAAGTCCGAAACTTCTT 852
Query 1053 GAAAGAATAAGAGAGCGGCCAAAATACCAAGTAAAAGAGGACGAAGAGATTCCAACAAAC 1112
|| || ||||||||||||||||| |||||||||||||| || ||||||| ||| | ||
Sbjct 853 GAGAGGATAAGAGAGCGGCCAAAGTACCAAGTAAAAGAAGATGAAGAGACTCCTAGGAAT 912
Query 1113 GGTCCAAAAGCTCCGGCTGAATCATCTGGGACTGTTAGAGTGGCTAAAGATGAGAGAGGC 1172
||||| |||||||| | ||| |||||||| |||||||| ||||||| |||||| ||| ||
Sbjct 913 GGTCCCAAAGCTCCAGTTGACTCATCTGGTACTGTTAGGGTGGCTAGAGATGAAAGAAGC 972
Query 1173 CAGGGAACTTCTGGAACTAGGTTGGATAAATGGTTGGATAAATGTTTTCAGGTAAAAACT 1232
|| || ||| ||||| |||| | | | | || | | |||| || ||
Sbjct 973 CAAGGCACTCCTGGATCTAGCT---ACA---G-TT---T---T-----CAGGGGAATACC 1014
Query 1233 GTCAGAAATGCGGGGTGGGACTTTAGCATTGGGGGTTCGCAGGGTGCTGGAACTGTTCGA 1292
|||| |||||| || |||||||||||| ||||||| || ||| || |||| | |||||
Sbjct 1015 GTCAAAAATGCTGGATGGGACTTTAGCGTTGGGGGGTCACAGAGTATTGGAGCAGTTCGT 1074
Query 1293 GCTTTAAAACCTCCACAAGCCAGGGAAAGGCGCCAAGAAGTTAATTCTAATCAGACTTCT 1352
|||||||||||||| ||||| ||||| |||||||| |||||| ||||||||||| |||
Sbjct 1075 GCTTTAAAACCTCCTCAAGCAAGGGAGAGGCGCCACGAAGTTTCTTCTAATCAGATTTCG 1134
Query 1353 CAAAAAACATCACGAACCAGTGGTAGTCAATTGTCATCCACTTTTGGT-GTCC-----CT 1406
||| |||| || || | ||||||| ||| | |||||| | |||| || | ||
Sbjct 1135 CAACGAACAACAAGAGCTAGTGGTAATCAGTGGTCATCTTCGACTGGTAGTACAATTTCT 1194
Query 1407 GAAATCTCTGAAGGAGGTTTTAATAA-AAGAGATTCTTATCAGAATGA-CT--A---T-- 1457
||| ||||||| |||||||| ||| |||| || ||| ||||||||| | | |
Sbjct 1195 GAAGCCTCTGAAAGAGGTTTTG-TAAGAAGACATCCTTTTCAGAATGATCACGAAGATGG 1253
Query 1458 CA---A-GAAGAAGATGATTCAA-G-T----GGTTCTGGAACTGTTGTCATAAGATCGCC 1507
| | |||||||| |||||| | | || || |||||||| ||||||||| | ||
Sbjct 1254 CTTCCACGAAGAAGACGATTCATCGCTCACTGGATCGGGAACTGTCGTCATAAGAGCCCC 1313
Query 1508 GAGAAGCTCTCAGTCATCTTCAATGTTTCGTGATCAAAGCTCTGGGTCTA-C--CAGGTA 1564
||||| ||||| ||||||||||| || ||||| |||||||||| ||||| | ||||||
Sbjct 1314 AAGAAGTTCTCAATCATCTTCAATATTCCGTGAACAAAGCTCTGTGTCTAGCGGCAGGTA 1373
Query 1565 TACGTCTTTTGATGATGCTTCTA-CAAGTGGAACAGTTGTTGTCCGTGGGCAGAATGATG 1623
| | |||||||||||||||| | |||||||||| |||||||| ||||||||| | ||||
Sbjct 1374 TGCACCTTTTGATGATGCTTC-AGCAAGTGGAACTGTTGTTGTTCGTGGGCAGTACGATG 1432
Query 1624 ATTCTGGATCACCTCGAACACCGAGATCTAGACTAGGGCTTCAAGAAAGAAGTTCCAGTG 1683
| ||||||||||||||||| || | ||||||||||||| ||||||| |||| ||| ||||
Sbjct 1433 ACTCTGGATCACCTCGAACCCCAAAATCTAGACTAGGGATTCAAGAGAGAACTTCAAGTG 1492
Query 1684 CCTCAGAGGATAGCATC-TCAAATCTTGCAGAGGCAAAATTAGCACTTGAAGCAGGTTTC 1742
|||| || ||||||| | | |||||| || |||||||| ||||||||| |||||||||
Sbjct 1493 CCTCCGAAGATAGCAACGT-AAATCTCGCGGAGGCAAAGGCAGCACTTGACGCAGGTTTC 1551
Query 1743 AGAAGAGGGAA-TGCTAGGGAAAGACTTGGTAATGGG-AAGGTTAACAAA-A-G--AAG- 1795
|||| |||||| |||||| ||||||||||| |||||| ||| || || | | |||
Sbjct 1552 AGAA-AGGGAAATGCTAGAGAAAGACTTGG-AATGGGGAAGAACAATAATGATGGGAAGG 1609
Query 1796 ---A--G-AGCAAG---C-AA-C---AGATAATTCTGATTACTTGA-GAAATTCCCGCGA 1840
| | || ||| | || | |||| |||||||||| || | |||||||| |||
Sbjct 1610 TTCACCGGAG-AAGGGACCAAACGGCAGATGATTCTGATTA-TTCAAGAAATTCCGGCGT 1667
Query 1841 TCATTCT-GATAAACAAAGACCAGT-C-ATGAGATCACAACAAGTGAGTGATGATGAAGA 1897
| | ||| | |||||||| | || | | | | | ||| |||||||||||||||| | ||
Sbjct 1668 TAAGTCTAG-TAAACAAAAAGCACTTCCAAG-G-TCAGAACAAGTGAGTGATGA--A-GA 1721
Query 1898 AGATGACTCCAAATTGGCATCATTGTCTGCATCATTGTCACTATTGCT-ATTACCATCCC 1956
||||||||||| || || ||||||| |||||||||||||| ||||||| || ||| ||||
Sbjct 1722 AGATGACTCCATATGGGAATCATTGCCTGCATCATTGTCAATATTGCTCAT-ACCGTCCC 1780
Query 1957 TAAAAGAGGCTGTTGGGGGTGACGACTCAAAAGGAA-CTATTGGACATAGAGTTTCGAGA 2015
||||||||||| |||| |||||| ||||||| || ||||||| | || ||| ||||||
Sbjct 1781 TAAAAGAGGCTCTTGG---TGACGATTCAAAAG-AATCTATTGGGCGTACAGTGTCGAGA 1836
Query 2016 TCCTTAGTTAAAATGGAACGCGAAAAGCCTGGTTCTTCTGAAGCTTTTATTGCCAAACTG 2075
||| |||| | |||||||| |||||||||||||||| |||||||||| ||||||| |||
Sbjct 1837 TCCCTAGTGATGATGGAACGTGAAAAGCCTGGTTCTTGTGAAGCTTTTGTTGCCAAGCTG 1896
Query 2076 ATCGAACAGTTGGGAAGTACAAAGGAAG-TGTCAGTGAAAGAAGTGCAAGACATGGCGAT 2134
|| |||| ||||||||| |||| |||| | || ||||||||| |||| || |||||| |
Sbjct 1897 ATTGAACTTTTGGGAAGTTCAAAAGAAGCT-TCGGTGAAAGAATTGCACGATATGGCGGT 1955
Query 2135 CCGTGTGTTCGCTAAGACAATGAAC-AATGATGCAGAGAACAAAAG-AAAGCAAGCTAGC 2192
|||||| || || ||||| | | | || ||||||||||||||||| ||| ||||||| |
Sbjct 1956 CCGTGTTTTTGCCAAGACCAC-ACCCAACGATGCAGAGAACAAAAGGAAA-CAAGCTAAC 2013
Query 2193 AAAGAATTTAGTTCTAATGCAAACTTTAGTCCACTTG-CAAGATTCTTATTCTCAAGATG 2251
|| || |||||||| || ||||| |||| ||||| | || |||||||| ||||||||||
Sbjct 2014 AAGGAGTTTAGTTCCAACACAAACGTTAGCCCACTCGGCA-GATTCTTACTCTCAAGATG 2072
Query 2252 GCTAGGTCAAACATCGCGTGATCTT 2276
|||||| ||| |||| |||||||||
Sbjct 2073 GCTAGGCCAATCATCACGTGATCTT 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98768005285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5