BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53170.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474440 jgi|Araly1|474440|fgenesh2_kg.1__4394__AT1G53170.1 651 0.0
> Ahg474440 jgi|Araly1|474440|fgenesh2_kg.1__4394__AT1G53170.1
Length=917
Score = 651 bits (352), Expect = 0.0
Identities = 454/499 (91%), Gaps = 24/499 (5%)
Strand=Plus/Plus
Query 414 CGGTGTTATCGTTGGTAGTAGTCCTACTCAGAGTAGCACCG---TCG--TCGA-CTCTCC 467
||||||| ||||| | |||||||||||||||||||||||| ||| || | ||||||
Sbjct 431 CGGTGTTTTCGTT-G--GTAGTCCTACTCAGAGTAGCACCGTCATCGACTCTACCTCTCC 487
Query 468 CACGGCGGCACGGTTTATAACACCTCCGCACCTCGAGCTCAGCTTAGGCGGCGGCGGCGC 527
|||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 488 CACGGCGGCAAGGTTTGTAACACCTCCGCAGCTCGAGCTCAGCTTA---GGCGGCGGCGC 544
Query 528 GTGTCGTCGTAAGATCCCGCTTGTGCATCCGGTTTACTACTATAACATGGCGACGTATCC 587
|||||||||||||||||||||||| | |||||||||||||| ||||||| || |||||||
Sbjct 545 GTGTCGTCGTAAGATCCCGCTTGTACGTCCGGTTTACTACTTTAACATGACGGCGTATCC 604
Query 588 -A--AAGATGACGACGTGTGGTGTCCAGAGCGAGTCTGAAACGTCGTCGGTCGTTGATTT 644
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GAGGAAGATGACGGCGTGTGGTGTCCAGAGCGAGTCTGAAACGTCGTCGGTCGTTGATTT 664
Query 645 CGAAGGTGGAGCTGGGAAGATATCTCCGCCGTTAGATCTGGATCTTAACTTAGCTCCTCC 704
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 665 CGAAGGTGGAGCTGGGAAGATATCTCAGCCGTTAGATCTGGATCTTAACTTAGCTCCTCC 724
Query 705 GGCGGAATAGGCCGTGAGtttttttt-tt-CTTATGTCGTTTCTTTAGACaaaaaaaaaT 762
|||||||||||||||||||||||||| || ||||||||||||||||||| ||||| || |
Sbjct 725 GGCGGAATAGGCCGTGAGTTTTTTTTCTTTCTTATGTCGTTTCTTTAGA-AAAAACAA-T 782
Query 763 AACGTTTCCtttttttttCTGCCTAAGaaaaaaa-TATTATCCGTTTTTTAGAAGAAAGT 821
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 783 AACGTTTTCTTTTT----CTGCCTAAGAAAAAAAATATTATCCGTTTTTTAGAAGAAAGT 838
Query 822 GTAGAAAAGCTCCAATATAATTTTTAGCTGCCGTGaaaaaaaaGTCGTTATGTATATATT 881
| ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 839 GGAGAAAAGCTAAAATATAATTTTTAGCTGCCATGGAAAAAAAGTCGTTATGTATATATT 898
Query 882 ATTATGAAACCCTATTATA 900
||||| ||||||||| |||
Sbjct 899 ATTATCAAACCCTATAATA 917
Score = 394 bits (213), Expect = 6e-109
Identities = 234/244 (96%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 172 ATGGGTTTGAAACCCGACCCGGTTGCTCCAACGAACCCGACTCATCATGAGAGTAATGCT 231
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 156 ATGGGTTCGAAACCCGACCCGGTTGCTCCAACGAACCCGACTCGTCATGAGAGTAATGCT 215
Query 232 GCCAAAGAGATTCGTTACAGAGGCGTTAGGAAACGTCCATGGGGAAGATACGCCGCTGAG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GCCAAAGAGATTCGTTACAGAGGCGTTAGGAAACGTCCATGGGGAAGATACGCCGCTGAG 275
Query 292 ATCCGAGATCCGGTTAAGAAAACTCGAGTCTGGCTCGGTACGTTCGACACCGCTCAGCAG 351
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 276 ATCCGAGATCCAGTTAAGAAAACTCGGGTCTGGCTCGGTACGTTCGATACCGCTCAGCAG 335
Query 352 GCGGCGCGTGCTTACGACGCAGCCGCGCGTGACTTTCGTGGTGTT-AAGGCTAAGACCAA 410
||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||
Sbjct 336 GCGGCGCGTGCTTACGACGCAGCAGCGCGTGACTTTCGTGGT-TCGAAAGCTAAGACCAA 394
Query 411 TTTC 414
||||
Sbjct 395 TTTC 398
Score = 193 bits (104), Expect = 2e-48
Identities = 140/155 (90%), Gaps = 12/155 (8%)
Strand=Plus/Plus
Query 1 AAACCATCTCTCAAAATGGCTTTGACTGTTCACAAGAAAGCTCCCCAAAAGGAGCGTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCATCTCTCAAAATGGCTTTGACTGTTCACAAGAAAGCTCCCCAAAAGGAGCGTTGC 60
Query 61 TTTACTCTC---CT------ATAAAAAGAAGCTCTTCTACTTCTTCT-CG--TTACCACA 108
||||||||| || |||||||||||||||||| |||||||| | ||||||||
Sbjct 61 TTTACTCTCAATCTCCTCCTATAAAAAGAAGCTCTTCTTCTTCTTCTTCTCATTACCACA 120
Query 109 AAACTCTTTCACCGATCTTCTCGTTCCATTCTTCT 143
||||||||||||||||||||||||||| |||||||
Sbjct 121 AAACTCTTTCACCGATCTTCTCGTTCCTTTCTTCT 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5