BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53180.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474441 jgi|Araly1|474441|fgenesh2_kg.1__4395__AT1G53180.1 2054 0.0
Ahg478943 jgi|Araly1|478943|fgenesh2_kg.3__1644__AT3G15115.1 89.8 5e-17
> Ahg474441 jgi|Araly1|474441|fgenesh2_kg.1__4395__AT1G53180.1
Length=1373
Score = 2054 bits (1112), Expect = 0.0
Identities = 1299/1386 (94%), Gaps = 25/1386 (2%)
Strand=Plus/Plus
Query 13 AACAAACACACCCACAAAGGAAAATCCGAAGACCCGATCTTTGTTATAAAACACACAAct 72
||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1 AACAAACACACCCACGAAGGAAAATCCGAAGACCCAATCTTTGTTAT-AAA-ACACAACT 58
Query 73 tctctctttttagaatctcttgtcttcttctttttaactttcttttgtaatctcttgtct 132
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 59 TCTCTCTTTTTAGAATCTCTTGTCTTCTTCTTTTTACCTTTCTTTTGTAACCTCTTGTCT 118
Query 133 GAAAAAGAAATGGATCATGTAAGTTCAAGTGAGTTACTTATTGATGATCTTCTTGAGGAT 192
||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| |||
Sbjct 119 GAAAACGAAATGGATCATGTGAGTTCAAGCGATTTACTTATTGATGATCTTCTTGAAGAT 178
Query 193 TACTGGTTCTTTGAGAACTTATTTACAAGAAGGTCGAGAGGCTTAAGGTATTGTCACTCA 252
||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||
Sbjct 179 TACTGGTTCTTTGAGAACTTAATTACAAGAAGGTCAAGAGGCTTAAGTTATTGTCATTCA 238
Query 253 GATCCTTACCCCTCTTCTTCTTCTACTTCGACTTCTCCTGAAAAAATGGGAGATTCAGAT 312
|||||||| || |||||||||||||||| ||| || |||||||||||||||||| ||||
Sbjct 239 GATCCTTA--CC-CTTCTTCTTCTACTTCAACTGCTGCTGAAAAAATGGGAGATTTAGAT 295
Query 313 AT-TGGGAAGGTTCTAGAAGCTTCCACAGGGCGATCTTTAATCAGGGCATCTTCTATAGA 371
| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 296 -TCGGGGAATGTTCTAGAAGCTTCCACAGGACGATCTTTGATCAGGGCATCTTCTATAGA 354
Query 372 TAGTAGAGAAGGCGGATCTCAGACGAAGCTGACG-GGCCGGTTCTCTGAAAAGATTAGGG 430
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 355 TAGTAGAGAAGGCGGATCTCAGACGAAGCTGACGAGG-CAGTTCTCTGAAAAGATTAGGG 413
Query 431 TTCAAGAACAGAGACAAGTTGGGTCTTCCTTGCAGAAGAAGGAACATGTGGTTCTTCCTA 490
||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 414 TTCAAGAACCGAGACACGTTGGGTCTTCCTTGCAGAAGAAGGAACCTGTAGTTCTTCCTA 473
Query 491 AATCTGGATCTCGTTCGGCTCCGGGGAAGATTCAAGAAGCTTCC-ACAAAACGTGG-TTT 548
|||||||||||||||||||||||||||||||||||||||||||| | |||| | || |||
Sbjct 474 AATCTGGATCTCGTTCGGCTCCGGGGAAGATTCAAGAAGCTTCCAAGAAAA-G-GGATTT 531
Query 549 GATCCGGGCACCTTCTTTGCCGCCTCAGATAGAAAAACGAGAGATGGACCGCGAGGCAAA 608
||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||| ||
Sbjct 532 GATCCGGACACCTTCTTTGCCGCCTCAGATAGAAAAAAGAGATATGGACCGTGAGGCGAA 591
Query 609 GAAGATGATCAATAAGCTGACAAGGCAGTTCTCTGAGAAGATTAGGGTTCTAGAACCGAC 668
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 592 GAAGATGATCAATAAGCTGACAAGGCAGTTCTCTGAGAAAATTAGGGTTCTAGAACCGAC 651
Query 669 GAGGCCTGGTGAGCATTTCTTGCAGAAAAAGGAAACTATTGCTCGAGACAAAGGGATTAC 728
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 652 GAGGCCTGGTGAGCATTTCTTGCAGAAGAAGGAAACTATTGTTCGAGACAAAGGGATTAG 711
Query 729 TGAAAGTTCTAGAAGCAACAAAACAGG-A--AGTAGCAGTAGTTATAGTAGTGTCAAGAT 785
||||||||||||||| ||||||| ||| | ||||| |||||||||||||||| ||||||
Sbjct 712 TGAAAGTTCTAGAAGGAACAAAATAGGAAGTAGTAGTAGTAGTTATAGTAGTGGCAAGAT 771
Query 786 CAGTTTGCAAAGAACTCAAACGATGCCAAATAACATGGGAAGAGAAGAAGATAACGAGGA 845
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 772 TAGTTTGCAAAGAACTCAAACGATGCCAAATAACATCAGAAGAGAAGAAGATAACGA-GA 830
Query 846 -AGACGAGTTTGAAGATCAAGAAAGCGACTCAAGAATGGGATTCTTGATCCGTGAAGCCC 904
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 831 TAGACGAGTTTGAAGATCAAGAAAGCGACTCAAGAATGGGATTTTTGATCCGTGAAGCCC 890
Query 905 TGGCTAGTTCACATTATGTTCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCAAGAA 964
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 891 TCGCTAGCTCACATAATGTTCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCGAGAA 950
Query 965 GCTTGAGATTAGAAGACACTGCTATGGTCAAACAAGGTGGCTCAAGTCCCAAAACGCTGC 1024
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 951 GCTTGAGATTAGAAGACACTGTTATGGTCAAACAAGGTGGCTCAAGTCCCAAAACGCTGC 1010
Query 1025 GTAAAACGTTAAGCAGCGTAGAAACAACCAAAGAGATTCAAAGGC-TGAAAGGTTATGAC 1083
|||||||||||||||||||||||||| ||||||||||||| |||| | | || |||||||
Sbjct 1011 GTAAAACGTTAAGCAGCGTAGAAACATCCAAAGAGATTCAGAGGCAT-AGAGATTATGAC 1069
Query 1084 CAACTGGTCGAGCCACGTGTCGCAAGTGGATTAGCTACACCACCTAGGGTTCCAAAGGAT 1143
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1070 CAACTGGTCGAGCCACGTGTCGCAAGCGGACTAGCTACACCACCTAGGGTTCCAAAGGAT 1129
Query 1144 TCAAGTAAAGAAATGAAGGATCAGATCAAGTTTTGGGCTCGAGCCGTAGCTACTAATGTC 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 TCAAGTAAAGAAATGAAGGATCAGATCAAGTTTTGGGCTCGAGCCGTAGCTACTAACGTC 1189
Query 1204 CGACAAGAGTGCTAAGATTTTTCTTACACTAATTAACTGTATTTCGTACAGAT--GATTC 1261
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1190 CGACAAGAGTGCTAAGATTTTTCTTACACTAATTAACTGTGTTTCGTACATATATGATTC 1249
Query 1262 TTATCTTGAACTCTTTTGTGTGTTTTGTTTTTCTGATCCTCCTGAAATAATGAGATTCCT 1321
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1250 TTATCGTGAACTCTTTTGTGTGTTTT-TTTTTCTGATCCTCCTGAAATAATGAGATTCCT 1308
Query 1322 CTGTTTATGTGATGATGATGTTCTTC-TTCttttttttGGGCAAGAAAAAAGTCATGATT 1380
|||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 1309 CTGTTTATGTGATGATGATGTTCTTCCTTCTTTTTTG-GGGCAAGAAAAATGTCATGATT 1367
Query 1381 GTGATG 1386
|||||
Sbjct 1368 ATGATG 1373
> Ahg478943 jgi|Araly1|478943|fgenesh2_kg.3__1644__AT3G15115.1
Length=1320
Score = 89.8 bits (48), Expect = 5e-17
Identities = 260/354 (73%), Gaps = 47/354 (13%)
Strand=Plus/Plus
Query 579 AGAAAAACGAGAGATGGACCGCGAGGCAAAGAAGAT-GATCAATAAGCTGACAAGGCAGT 637
||||||| || || |||| ||||| | ||||||| || || | | ||| ||||||||
Sbjct 411 AGAAAAAAGA-AGGTGGA-GGCGAGCCTGAGAAGATAAAT-AAGATGATGAGAAGGCAGT 467
Query 638 TCTCTGAGAAGATTAGGGTTCTAGAACCGACGAGGCCTGGTGAGCATTTCTTGCAGAAA- 696
||||||||||||||||||||| ||||| || || | | | | | || ||| |||
Sbjct 468 TCTCTGAGAAGATTAGGGTTCAAGAAC-GAAGAA-C-T--T-A-C-TT----GCA-AAAG 514
Query 697 AAGGAAACTATTGCTCGAGACAAAGGGA-TTACTGAAAGTTCTAG-AAGCAACAAAACAG 754
|||||| || | | |||||| ||||||| ||| ||| |||| || ||| |||||||||
Sbjct 515 AAGGAACCTGTGGTTCGAGA-AAAGGGAATTAAAGAAGGTTCGAGGAAG-AACAAAACAA 572
Query 755 GAAGTAGC-AGTAGTTATAGTAGTG-TCA-AGATC-A-GT--------TTGCAAAGAACT 801
| |||| | ||||||| ||||| | | || || | | ||||| ||||||
Sbjct 573 GTAGTA-CTAGTAGTTGTAGTAACAATAATAGCTCGATGGGAGGGGGGTTGCAGAGAACT 631
Query 802 CAAACGAT-GCCAAATAACATGGGAAGAGAAGAAGATAACGAGGAAGACGAGTTTGAAGA 860
|| || || ||| | | |||| |||||||||| ||| | || | |||||| ||||
Sbjct 632 CAGAC-ATTGCCGAGTTACATAGGAAGAGAAGGCGAT---GT--AA-ATGAGTTTCAAGA 684
Query 861 TCAAGAAA--GC-GACTCAAGAATGGGATTCTTGATCCGTGAAGCCCTGGCTAG 911
|||||| | | || |||||||||||||||||||||||||||||| | |||||
Sbjct 685 TCAAGAGATTGATGATTCAAGAATGGGATTCTTGATCCGTGAAGCCATCGCTAG 738
Score = 69.4 bits (37), Expect = 6e-11
Identities = 102/131 (78%), Gaps = 14/131 (11%)
Strand=Plus/Plus
Query 924 TCCAAAGGTTTCAAACAATCAAAGGCAGAGACCACCAAGAAGCTTGAGATTAGAAG-A-C 981
|||||||||||||| || || |||||| ||||||||||||| || ||||| ||||| | |
Sbjct 781 TCCAAAGGTTTCAAGCATTCCAAGGCATAGACCACCAAGAAACTCGAGATCAGAAGAAGC 840
Query 982 -ACTGC---TA-T-G--GTC-AA--ACAAGGTGGCTCAAGTCCCAAAACGCTGCGTAAAA 1030
| | | | | | ||| || |||| | || ||| || |||||||||||||||||
Sbjct 841 TA-TTCAAGAATTGGTCGTCAAATCACAAAGAAGCCCAAATCGCAAAACGCTGCGTAAAA 899
Query 1031 CGTTAAGCAGC 1041
|||||||||||
Sbjct 900 CGTTAAGCAGC 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5