BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53190.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314643 jgi|Araly1|314643|fgenesh1_pm.C_scaffold_1003423 2531 0.0
Ahg478936 jgi|Araly1|478936|fgenesh2_kg.3__1637__AT3G15070.1 211 1e-53
> Ahg314643 jgi|Araly1|314643|fgenesh1_pm.C_scaffold_1003423
Length=1533
Score = 2531 bits (1370), Expect = 0.0
Identities = 1462/1508 (97%), Gaps = 0/1508 (0%)
Strand=Plus/Plus
Query 234 AGAGGGCTTCTGCAGCAAGCGAAATGGGACAAAGAAATAGGAATGTTGATTTAGAAATGG 293
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 26 AGAGGGGTTCTGCAGCAAGCGAAATGGGACAAAGAAATAGGACTGTTGATTTAGAAATGG 85
Query 294 AGCAGCAGCAATCTCAAGCTTCTCTCCAAGCAGAGCCTTGCATCCTTTTAGGCAGCTTTC 353
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 86 AGCAGCAGCAATCTCAAGCTTCTCTCCAACCAGAACCTTGCATCCTTTTAGGCAGCTTTC 145
Query 354 CGCAACAACCGGATAATAATAATATGCCTGCTATGGTTGCACACGTTCCTAATTTAGAAC 413
||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 146 CGCAACAACCGGATAATAATAATATCCCTGCCATGGTTGCACACATTCCTAATTTAGAAG 205
Query 414 CTCATTCTCTTCAAGACCCAACTTATGACAACTCGGCCATGTTCTACGGGCTTCCTCAGT 473
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 206 CTCATTCTCTTCAAGACCCAACATATGACAACTCGGCAATGTTCTACGGGCTTCCTCAGT 265
Query 474 ATCATCATCATCCTCACCAGCGTGTTCCAACGAATTTCTATGTTCCCTATGTGGCATTTC 533
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 266 ACCATCATCATCCTCATCAGCGTGCTCCAACGAATTTCTATGTTCCCTATGTGGCATTTC 325
Query 534 AGGCTCCTCCGGGTCAGTTACCATCTTCAAGCAGTCACGGTGTAGTTGGTGTAAGTCCTG 593
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 326 AGGCTCCTCCGGGTCAGTTACCATCTTCAAGCAGTCACGGTGTGGTTGGAGTAAGTCCTG 385
Query 594 ATCATGAATACGAAAGAAATGCTCATTTTATGGATCACACAAGAGGGACATACAAGCGAA 653
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 386 ATCATGAATACGAAAGAAATGCTCATTTTATGGATCACACAAGAGGGACATATAAACGAA 445
Query 654 AGAACGCTGAAGGAATACCCGGACAACCTCAATATTTAAGTACCTTAGCAGCTCCATTTA 713
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 446 AAAACGCTGAAGGAATACCCGGACAACCTCAATATTTAAGTACCTTAGCAGCCCCATTCA 505
Query 714 ACACACCGGAGACAATAGCCCCTTTTGGAGGCGCTAGGAACAGACCAGGAGCTGTTACAG 773
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 506 ACACACCGGAGACAATAGCACCTTTTGTAGGCGCTAGGAACAGACCAGGAGCTGTTACAG 565
Query 774 TGAACACTGTTCTTCCTTCTCATGCTCCAAACAACTTCATTCAAGGAAACTATGCAGGTC 833
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 TGAACCCTGTTCTTCCTCCTCATGCTCCAAACAACTTCATTCAAGGAAACTATGCAGGTC 625
Query 834 ATCATCCTTTTCCACCTCCTGGCTCAATGTGGTATGATCAACACCACGGCAGATCTGATG 893
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 626 ATCATCCTTTTCCACCTCCTGGATCAATCTGGTATGATCAACACCACGGCAGATCTGATG 685
Query 894 GCTCACCTTCGTTCTGGCCCACACCTTACATGCACGGTAGTAACATTTTCGCTGGTTCCA 953
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 686 GCTCACCTTCGTTCTGGCCCACACCTTACATGCACGGTAGTAACATTGTCGCTGGTTCCA 745
Query 954 TAGAGTCTAGTAGCAGAAACCCTACATCATTTATGTATCCTTCTCAGTTAAACCCGAGGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 TAGAGTCTAGTAGCAGAAACCCTACATCATTTATGTATCCTTCTCAGTTAAACCCGAGGG 805
Query 1014 ACCACTATTATAGTCATCATCACCACCCGGCACCTCCTCCTGTACAAGGCATGAGAGGCC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 ACCACTATTATAGTCATCATCACCACCCGGCACCTCCTCCTGTACAAGGCATGAGAGGCC 865
Query 1074 AGAATGCCACATTATATCCCCACACAGCTTCTTCTGCTTCATACAGAGTTCCTCCAGGGA 1133
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 866 AGAATGCCACATTATATCCTCACACAGCTTCTTCGGCTTCATACAGAGTTCCTCCAGGGA 925
Query 1134 GTTTTACTCCTCAGAACACAATGAATAGTGGTCCCTTGGGGTCAGAGATGGGCTCGAGTC 1193
||||| |||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 926 GTTTTGCTCCGCAGAACACAATGAATAGTGGTCCCTCGGGCTCAGAGATGGGTTCGAGTC 985
Query 1194 ACATGGGTCCGGTTCAACCAACCGGGTTTCGGATATACCAGCATCATCAGCGAGATGATT 1253
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ACATGGGTCTGGTTCAACCAACCGGGTTTCGGATATACCAGCATCATCAGCGAGATGATT 1045
Query 1254 CTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTTCCTCGGCTTAGAGTGATGC 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 CTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTTCCTCGGCTTAGAGTGATGC 1105
Query 1314 CTGATGATGAAGTTGCGCTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTGGAAATAATC 1373
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 CTGATGATGAAGTTGCACTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTGGAAATAATC 1165
Query 1374 ACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACGAGGAGCTTC 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 ACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACGAGGAGCTTC 1225
Query 1434 TTGCTTTGAGTGAGCGAATTGGAACAGTAAACACTGGGTTGCCGGAGGAAGATGTTAAGA 1493
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1226 TTGCTTTGAGTGAGCGAATCGGAACAGTAAACACTGGTTTGCCAGAGGAAGATGTTAAGA 1285
Query 1494 ATCATTTGAAAACAAGAACATGTTCTGGAATCAACTTTGAAAAAGAGTCGTCGTCCCCAC 1553
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1286 ATCATTTGAAAACAAGAACATGTTCTGGAATCAACCTTGAAAAAGAGTCGTCGTCTCCAC 1345
Query 1554 GAACTAAAGATTTAGAAACCGAACCGTGCACTATATGTCAGGAAAGCTTCAAGAACGAAG 1613
||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1346 GAACTAAAGATTTAGAAACTGAACCGTGCACGATATGTCAGGAAAGCTTCATGAACGAAG 1405
Query 1614 AAAAGATTGCGACTTTGGATTGCGGGCACGAGTATCATGCAGAGTGCTTGGAGAAATGGC 1673
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AAAAGATTGCAACTTTGGATTGCGGGCACGAGTATCATGCAGAGTGCTTGGAGAAATGGC 1465
Query 1674 TGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAGGCACTGGTCATGGAGAAGAGAA 1733
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1466 TGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAAGCACTGGTCATGGAGAAGAGAA 1525
Query 1734 AGGTATAG 1741
||||||||
Sbjct 1526 AGGTATAG 1533
> Ahg478936 jgi|Araly1|478936|fgenesh2_kg.3__1637__AT3G15070.1
Length=1824
Score = 211 bits (114), Expect = 1e-53
Identities = 419/559 (75%), Gaps = 50/559 (9%)
Strand=Plus/Plus
Query 1190 AGTCACATGGGTCCGGTTCAACCAACCGGGTTTC-GGATATACCAGCATCAT-CAGCGAG 1247
||||| |||| | ||||||| |||||||| ||| || || |||| || || | | |||
Sbjct 1005 AGTCATGTGGGACAGGTTCAATCAACCGGG-TTCAGGGTAAACCA--AT-ATCCCG-GAG 1059
Query 1248 ATGATTCTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTT-CCTCGGCTTAGA 1306
| |||| |||||||| ||||| || || | ||||||| || | || || ||||||
Sbjct 1060 AAGATTTTGTACCTGCAGCAATTC-TA-A-GACACCGT-GA--A-TTGAATCACCTTAGA 1112
Query 1307 GTGATGCCTGATG-A-TGAAGTTGCGCTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTG 1364
| ||||| | | | | || |||| |||| |||| | |||||||| | | | | ||
Sbjct 1113 GCAATGCCCG-CGAATTCAA-TTGCACTTTGGGAGGTAGGAGACTT-C-T-ACGATGCT- 1166
Query 1365 GAAATAATCACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACG 1424
| |||| | | |||||||||| ||| ||||| || || || ||||| ||||| || |
Sbjct 1167 G--TTAATTATGTCGATCATCATCAAGACATGCGCTTAGATATAGAGGATATGTCATATG 1224
Query 1425 AGGAGCTTCTTGCTTTGAGTGAGCGA-ATTGGAACAGTAAACACTGGGTTGCCGGAGGAA 1483
|||| |||||||||||||| || | | |||||||| || || ||||| ||| | || |||
Sbjct 1225 AGGAACTTCTTGCTTTGAGCGA-CCAGATTGGAACTGTGAAGACTGGCTTGTCAGAAGAA 1283
Query 1484 GATGTT-AAGAATCATT-TGAAAACAAGAACAT-GTT-----CTGGAATCAACTTTGAAA 1535
|||||| ||| ||| || |||||| |||||| | ||| | |||||||| | |||
Sbjct 1284 GATGTTAAAG-ATC-TTCTGAAAAAAAGAACCTCGTTAACGACCAGAATCAACCTGGAAG 1341
Query 1536 AAGAGTCGTCGTCCCCACGAACTAAAGATTTAGAAACCGAACCGTGCACTATATGTCAGG 1595
||| ||| | | | || | ||| |||||| || | ||||| ||||| ||||
Sbjct 1342 AAG-GTC--C-T-TCTAC---C----GATCAAGAAACTGATTCTTGCACGATATGCCAGG 1389
Query 1596 AAAGCTTCAAGAACGAAGAAAAGATTGCGACTTTGGATTGCGGGCACGAGTATCATGCAG 1655
||| || ||||||| |||| ||||| || || |||||||| |||| | || |||||||
Sbjct 1390 AAAACTACAAGAACCAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1449
Query 1656 AGTGCTTGGAGAAATGGCTGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1715
| ||||||||||| ||| || || | ||||||||||||||||||||||||||||||||||
Sbjct 1450 AATGCTTGGAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1509
Query 1716 TGGTCATGGAGAAGA-GAA 1733
||||||||||||||| |||
Sbjct 1510 TGGTCATGGAGAAGAAGAA 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5