BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53200.1
Length=2186
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314644 jgi|Araly1|314644|fgenesh1_pm.C_scaffold_1003424 1609 0.0
> Ahg314644 jgi|Araly1|314644|fgenesh1_pm.C_scaffold_1003424
Length=1839
Score = 1609 bits (871), Expect = 0.0
Identities = 1023/1096 (93%), Gaps = 11/1096 (1%)
Strand=Plus/Plus
Query 283 GAAACCGAAGAGAAAACTGATAAGCTTGAGAAGATTAAAGCTAAGCGTCGTCGCGTGAGT 342
||||||||||||||| |||| ||||||||| ||| |||||||||||||||||| |||| |
Sbjct 7 GAAACCGAAGAGAAATCTGAAAAGCTTGAGGAGACTAAAGCTAAGCGTCGTCGAGTGAAT 66
Query 343 AGCTCAGAAATCGACTCTGATACACAAAAGTACAAGAGAATTCAACGCTGCAGAGCGAAA 402
|||||||| || | ||| |||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 67 AGCTCAGATATAGTCTCAGATACACACAAGTACAAGAGAATTCAGCGCTGCATAGCGAAA 126
Query 403 CCATCTTATCTTCT-ATGTATTGGGCCAAAGTCAAGCCGAAGTGAGTACCTCAATAGATT 461
|||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct 127 CCATCTTATCTTCTGA-GTCTTGGGCCAAAGTCAAGCCGAAGTGAGTATCTCAATAGATT 185
Query 462 ACCAGGATTACTTCGTGAGCTACTTCGTAATAGACACTGGAATGATGCAAGCCGTGTGCT 521
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||
Sbjct 186 ACCAGGATTACTTCGTGAGCTACTTCGTAAGAGATACTGGAATGATGCAAGTCGTGTACT 245
Query 522 TTCTGTTCTGATGAAAGGGACAATTAACGATCCTTGTCCGAAGATGAATCGCCTCAAATA 581
||| |||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 246 TTCAGTTCTGATGAGAGGGACAATTAAAGATCCTTGTCCAAAGATGAATCGTCTCAAATA 305
Query 582 CGAGGCTCATATACAAATTGTGAGTCACTCGGAAACTAATAAAAACAAAGCTGATGAGAT 641
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 306 CGAGGCTCATATACAAATTGTGAGTCACTTGGAAACTAAGAAAAACAAAGCTGATGAGAT 365
Query 642 TGGAAGAATATATGATACTTGGATTGGGCAGATTGGTAAACAACATAAAGAGGAGAGGCT 701
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 366 TGGAAGAGTATATGATACTTGGATTGGCCAGATTGGTAAACAACATAAAGAGGAGAGGCT 425
Query 702 CTTGGTTTGGTACGAGCAAATTTGTCATTTTATTGAGCATGAGATGAACAATGAGGCCTA 761
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 426 CTTGGTTTGGTTCGAGCAAATTTGTCATTTTATTGACCATGAGATGAACAGTGAGGCCTA 485
Query 762 TAGTACTGTAATCAGCTTAATGCAGAACCGTGATTTCGCAATGCTTCCACGGGCCAATCT 821
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TAGTGCTGTAATCAGCTTGATGCAGAACCGTGATTTCGCAATGCTTCCACGGGCCAATCT 545
Query 822 GTTTATAGGAATCTCATTCTACAAGATGTGGTGTAATAAATTCTTGAAGGAGTTGCAGCC 881
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 546 GTTTATAGGAATCACATTCTACAAGATGTGGTGTAGTAAATTCTTGAAGGAGTTGCAGCC 605
Query 882 TGAAGATGCAGATGACAATGGAAGCGTATCCAACATATCGGAATCAGGATCTGGTAGTCT 941
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 606 TGAAGATGTAGATGACAATGAAAGCGTATCCAACATGTCGGAATCAGGATCTGGTAGTCT 665
Query 942 GGTTGAGTGTTCAGGCAGGGATGAGTCGGTGTGCTCTTTGGCGTCAGAGGTTTCTGCGAG 1001
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 666 GGTTGAGTGTTCAGGCAGGGATGAGTCGGTGTGCTCTATGGCGTCAGAGGTTTCTGCTAG 725
Query 1002 AAAAGATTCAGAGACTTCCGTCATGaaaaataaaaaaGTTTCCCATTTGTCTATCAGTGA 1061
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 726 AAAAGATTCAGAGACTTCAGTCATGAATAATAAAAAAGTTTCCCATTTGTCCATCAGTGA 785
Query 1062 CTCGGAGACAAGGATGGATACGAAGGTAAAAGTGATGAGTACTCC-CTATGTTAC-ACCT 1119
||| |||||||||||||||||||||||||| ||| ||||||||| | || |||| || |
Sbjct 786 CTCCGAGACAAGGATGGATACGAAGGTAAACTTGAAGAGTACTCCGC-ATTTTACCAC-T 843
Query 1120 CCACCACAACTCTATGCGATCTCTGAAGAAAACGAAGCCTCTTTGGGAGATGGAATTGTT 1179
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 844 CCACCACAACTCTATGCGACCTCTGAAGAAAACGAAGCCTCTTTGGGAGATGGG---GTT 900
Query 1180 GAATTTGATCCCACTGTTATTAATATTCTTGGTGACATGGATCCATGGTTGCTTCCCTTT 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 GAATTTGATCCCACTGTTATTAATATTCTTGGTGACATGGATCCATGGTTGCTTCC-TTT 959
Query 1240 -AAACCACCAGAAGATCCGGATTGCTACAGAAAGATTGTCAATGATTCTTATTATAAGGA 1298
||||| ||| |||||| ||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 960 CAAACCGCCATCAGATCCTGATTGCTACAGAAAGATTGTCGATGATTCGTATTTTAAGGA 1019
Query 1299 AGCAGTGAAATATATGCGGCAAACTCTTCAGTCCCCGCCCCATGTATCTTTGGCTGCATT 1358
|||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1020 AGCATTGAAACATATGCGGCAAACTCTTCAGTCCCCGCATCATGTATCTTTGCCTGCATT 1079
Query 1359 ACATCCACTTGTACAG 1374
||||||||||||||||
Sbjct 1080 ACATCCACTTGTACAG 1095
Score = 996 bits (539), Expect = 0.0
Identities = 649/703 (92%), Gaps = 4/703 (1%)
Strand=Plus/Plus
Query 1376 TTCTGTTAATCGGAGGTCATGTAGATGAAGCGATGAAAGTGGTCGAGGAGATGTGCAACA 1435
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1139 TTCTGTTAATTGGAGGTCATGTAGATGAAGCGATGAAAGTGGTCGAGGAGCTGTGCAACA 1198
Query 1436 AAATACATGACGTAAAACCTTTCAGGATTAAGGCCCTAATGATGGAGAAATTTCATCGTA 1495
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1199 AAGTACATGACATAAAACCTTTCAGGATCAAGGCCCTAATGATGGAGAAATTTCAGAGTA 1258
Query 1496 ACAGTGACATGCTCGCAAAATGCTATGAAGATATCTTAAAGATTGATCCTTGTTGTATAA 1555
|||| |||||||| | ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1259 ACAGCGACATGCTTGGAAAATGCTATGAAGATATCTTAAAGATCGATCCTTGTTGTGTAA 1318
Query 1556 CTACCCTAAAGAAGCTTATTGGAATGTGCTTAGAAGATGAGTATAGTAGAGAGTCGCTTA 1615
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1319 CTACCCTGAAGAAGCTTATTGGAATGTGCATAGAAGATGAGTATAGTAGAGAGTCGCTAA 1378
Query 1616 CCGAAATGATAGCGTTGCATGTAGAAGCTTCTTTTCCTGAGCCTGAAATTTGGAAAGAGT 1675
||||||||||||| ||||||||||||| |||||||||||| || ||||| ||||||||||
Sbjct 1379 CCGAAATGATAGCATTGCATGTAGAAGGTTCTTTTCCTGAACCCGAAATCTGGAAAGAGT 1438
Query 1676 TAGCCTCTTGCTTCAGTAACTTCTTTGAGAATCTTGATGAAGACCGATTGTCAGTATGCC 1735
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TAGCCTCTTGCTTCAGTCACTTCTTTGAGAATCTTGATGAAGACCGATTGTCAGTATGCC 1498
Query 1736 TTGACGGATCTGAAGATAAACGGAATCCACAAACGTATTCTGTTCGATACAACCCAACAC 1795
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 1499 TTGACGGATCTGAAGATAAAAAGAATCCACAAACATATTCTGTTCGATACAACCTGACAC 1558
Query 1796 CAAAAACGTTCACCAAGACATCATGGACTCTTCGGGCTAAGTGGTGGCTAAACCGCCATT 1855
|||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1559 CAAAAATGTTCACCAATACATCATGGACCCTTCGGGCTAAGTGTTGGCTAAACCGCCATT 1618
Query 1856 TCTCCCCGCAAATGCTAGAGACAGAAATAAAAAAC-GTTACATTGACAGGAGATTGGGAG 1914
|||||||| ||||||||||||||||||||| |||| || | | ||||||||||| |||||
Sbjct 1619 TCTCCCCGGAAATGCTAGAGACAGAAATAAGAAACAGT-ATAGTGACAGGAGATCGGGAG 1677
Query 1915 ATGATGACTTACAAAGCCGCTTGTGCAAGTTATATCTACGGACGAGAGTTCGGTTATGTT 1974
||||||||||||||||| || ||||| ||| ||||||| || |||||||| |||||||||
Sbjct 1678 ATGATGACTTACAAAGCGGCATGTGCTAGTCATATCTATGGGCGAGAGTTTGGTTATGTT 1737
Query 1975 ACAAAAGTGTACGAACTGTTAAAGAGTAGCAATAAGC-GAGAGTTTTTCAAATTCTTGAG 2033
|||||||||||| ||||||| ||||||||||| || | |||||||||||||||||||| |
Sbjct 1738 ACAAAAGTGTACCAACTGTTGAAGAGTAGCAACAA-CAGAGAGTTTTTCAAATTCTTGCG 1796
Query 2034 AGAACACAGAGTGAATGGGAACAAGATGTACAATTTTGAATAG 2076
||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 1797 GGAACATAGAATGAATGGGAACAAGATTTACAATTTTGAATAG 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82274929200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5