BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53210.1
Length=2219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474446 jgi|Araly1|474446|fgenesh2_kg.1__4400__AT1G53210.1 3000 0.0
> Ahg474446 jgi|Araly1|474446|fgenesh2_kg.1__4400__AT1G53210.1
Length=2080
Score = 3000 bits (1624), Expect = 0.0
Identities = 1846/1951 (95%), Gaps = 23/1951 (1%)
Strand=Plus/Plus
Query 104 AACGTCCTCCTTTGATTTCACCtttttttGTTGtcttcttctttcgaaatcaatcatgag 163
|||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||
Sbjct 40 AACGTCCTCCTTTGATTTTATC-TTTTTTGTTGTTTTCTTCTTTCGAAATCAATCATGAG 98
Query 164 attcagatctctcatctctctcctcttccttctcttcttcacttcatctGCTTACGCTCG 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 ATTCAGATCTCTCATCTCTCTCCTCTTCCTTCTCTTCTTCACTTCATCTGCTTACGCTCG 158
Query 224 ATTCGTCTCCCTAAACCCATCTTCAACGAGTCTAATCTCCGATGGAATCGACGGTGGTTC 283
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 159 ATTCGTCTCCCTCCACCCATCTTCAACGAGTCTTGTCTCCGATGGAATCGACGGTGGTTC 218
Query 284 AAATCTCGCCGGT---TCCGGATCGGTTATCAAGTCGGTTGTTTCGGCTCCGGCTGAGGA 340
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 219 AAATCTCGACGGTGGCTCCGGATCGGTTATCAAGACGGTTGTTTCGGCTCCGGCTGAGGA 278
Query 341 AAAGGAGGAAGCTTGTGAGCAGACATACGGGTTTATGCCGTGTACTAAGACCGCTCTTGG 400
|||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 279 AAAGGAGGAAGCTTGTGAACAGACCTATGGGTTTATGCCGTGTACCAAGACCGCTCTTGG 338
Query 401 AAACGTGTTTCTGATTTTGGTTTATGGATTTCTCATGTTTACGGCTGCGACGTATCTCTC 460
||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct 339 AAACGTGTTTCTGATTTTGGTTTATGGGTTTCTCATGTTCACTGCCGCGACGTATCTCTC 398
Query 461 TGCTGGAAGTGAGCTTCTTCTTGAGATCCTTGGACCTGGAATTGTCGGTGGTTTGTTTCT 520
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 399 TGCCGGAAGTGAGCTTCTTCTTGAGATCCTTGGCCCTGGAATTGTCGGTGGTTTGTTTCT 458
Query 521 TCCGATGCTTGGTGCTCTTCCTGACGCTATGCTTATCATGGTGTCTGGACTATCTGGAGA 580
||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 459 TCCTATGCTCGGTGCTCTTCCTGACGCTATGCTTATTATGGTGTCTGGACTTTCTGGAGA 518
Query 581 TGCAGCAACTGCTCAAAGCCAAGTCTCTGTGGGAATGGGTTTGCTTGCTGGTTCCACTGT 640
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 519 CGCAGCAACTGCTCAAAGCCAAGTTTCTGTGGGAATGGGTTTGCTTGCTGGCTCCACTGT 578
Query 641 TATGCTTCTCACTGTTATCTGGGGAACTTGTACTGTGGTTGGCAAGTGTGATCTTCGTGA 700
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 579 TATGCTTCTCACTGTTATCTGGGGAACTTGCACTGTGGTTGGCAAGTGTGACCTTCGAGA 638
Query 701 TTCAATTGCTGTAAACAACCAAGACACCAAAGGCTTT-CACCTAAAAGATTCTGGTGTAA 759
||| |||||||| ||||||||||| || ||||| ||| || || ||||||||||||||||
Sbjct 639 TTCTATTGCTGTTAACAACCAAGATACTAAAGG-TTTCCATCTTAAAGATTCTGGTGTAA 697
Query 760 CTGTTGATATTTGGACCAGCTATGCTGCAAGAATAATGGCTATATCAGTTATTCCGTTCG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 CTGTTGATATTTGGACCAGCTATGCTGCAAGAATAATGGCTATATCAGTTATTCCGTTCG 757
Query 820 TCATTGTCCAGCTTCCGCAGATGTTGGGCTCAACCTCTGGAAGACAATTGTCCGTGTTGA 879
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 758 TCATTGTCCAGCTTCCGCAGATGTTGGGCTCTACATCTGGAAGACAATTGTCCGTGTTGG 817
Query 880 TTGCTCTAATCCTTTCAGTTCTTATGTTGATCTCTTACTGTGTATATCAGGTATTCCAAC 939
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 818 TTTCTCTAATCCTTTCAGTTCTTATGTTGATCTCTTACTGTGTATATCAGGTCTTCCAAC 877
Query 940 CATGGATCCAAAGGAGACGGCTTGCTTTTGCAAAACACAAGCATGTTATATCAGGAATAC 999
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CGTGGATCCAAAGGAGACGGCTTGCTTTTGCAAAACACAAGCATGTTATATCAGGAATAC 937
Query 1000 TAAGGCACTTGAAACAACATGCTCTGGGAAGGCTTCTTGATGATGAAGGTCAGCCTGATG 1059
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TAAAACACTTGAAACAACGTGCTCTGGGAAGGCTTCTTGATGATGAAGGTCAGCCTGATG 997
Query 1060 AACATGTCATTCGAAAGTTGTTTTTGACAATTGATGCAAACAATGACGGACACTTGTCAG 1119
||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||
Sbjct 998 AACATGTCATTCGAAGGTTGTTTGAGACAATTGATGCAAACAAGGACGGACACTTATCAG 1057
Query 1120 CGGCTGAACTAAAGGCGCTTATCATTGGGATCAGCTTTGAGGATATAGATTTTGACAAGG 1179
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1058 CGGCTGAACTAAAGGCGCTTATCATTGGGGTCAGCTTTGAGGAGATAGATTTTGACAAGG 1117
Query 1180 ATGATGCTGTGGGAAAAGTTCTCCAAGATTTTGATAAGACTCTTGATGAGCAAGTTGATC 1239
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 ATGATGCTGTGGGAAAACTTCTCCAAGATTTTGATAAGACTCTTGATGAGCAAGTTGATG 1177
Query 1240 AAGAAGAGTTTGTCCGTGGAATTAAGCAATGGCTTATCCAGGCAATGGGAGGTGCTCCAT 1299
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1178 AAGAAGAGTTTGTCCGTGGAATTAAGCATTGGCTTATACAGGCAATGGGAGGTGCTCCAT 1237
Query 1300 CTGGTCCTGAAGCTGGCCCTCGAACAATGAAATTCCTTGACAATTTCCATGTGCAAACAA 1359
|||||||||| || || ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1238 CTGGTCCTGATGCCGGTCCTCGAACAATGAAAGTCCTTGACAATTTCCATGTGCAAGCAA 1297
Query 1360 AGAGAGAGCATGCTTTGTTGGGAGATAACGAGAATGGTGAGAATGATGAGGAAGGC---G 1416
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1298 AGAGAGAGCATGCTCTGTTGGGAGATAACGAGAATGGTGAGAATGATGAGGAAGGCGAAG 1357
Query 1417 G-TGAG-G-TTGCAGACCCAAAATGGATCACCATTAAAGCAGCTCTGCTGCTACTGTTAG 1473
| ||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1358 GCGGAGAGATTGCAGATCCAAAATGGGTCACCATTAAAGCAGCTCTGCTGCTACTGTTAG 1417
Query 1474 GAGCTGCCATTGCAGCTGCATTTGCTGATCCTTTAGTCGACACTGTTAACAACTTCTCCG 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GAGCTGCCATTGCAGCTGCATTTGCTGATCCTTTAGTCGACACTGTTAACAACTTCTCCG 1477
Query 1534 CAGCCACAGGGATTCCGTCTTTCTTCATTTCCTTCATCGCTTTGCCTTTGGCCACCAATT 1593
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1478 CAGCCACAGGGATCCCGTCTTTCTTCATTTCCTTCATAGCTTTGCCTTTGGCCACCAATT 1537
Query 1594 CAAGTGAAGCCGTGTCTGCCATCATCTTCGCATCCCGCAAAAAGATCAGAACCGCCTCTT 1653
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1538 CAAGTGAAGCTGTCTCTGCCATCATCTTCGCTTCCCGCAAAAAGATCAGAACCGCCTCTT 1597
Query 1654 TAACTTTCTCCGAGCTATGTGGTGGAGTGACAATGAACAACATTCTGTGTCTCTCGGTGT 1713
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1598 TAACTTTCTCTGAGCTATGTGGTGGAGTGACAATGAACAACATTCTATGTCTCTCGGTGT 1657
Query 1714 TCTTAGCAATCGTCTACGTTCGAGGACTGACATGGAACTTCTCATCAGAAGTGTTGGTGA 1773
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1658 TCTTAGCGATCGTCTACGTTCGAGGACTAACATGGAACTTCTCATCAGAAGTGTTAGTGA 1717
Query 1774 TTCTCATCGTTTGTCTGGTGATGGGCGGTTTCGCGAGTTTCCGCACAACTTATCCTCTTT 1833
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1718 TTCTCATCGTTTGTCTGGTGATGGGTGGTTTCGCGAGTTTCCGCACAACTTATCCTCTTT 1777
Query 1834 GGACATGTTTCATAGCTTACTTGCTTTACCCATTCTCCTTGGGTCTGGTCTATATTCTTG 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 GGACATGTTTCATAGCTTACTTGCTTTACCCATTCTCCTTGGGTCTGGTCTATATTCTTG 1837
Query 1894 ATTACTGGTTTGGCTGGTCGTAGATATCACTCTCTGTTCAAAGAGTTTGTTCTA-ATGAG 1952
|||||||||||||||||||||||| ||||| ||||||||||||||||||| | | |||||
Sbjct 1838 ATTACTGGTTTGGCTGGTCGTAGAGATCACACTCTGTTCAAAGAGTTTGTCC-ACATGAG 1896
Query 1953 TGAGTGTCTTCGCGCGTGGTTTCGTTTCTTCTCTACatatatatatatatatGGATTCTC 2012
||||| ||||| |||||| |||||||||||||||| ||||| | | ||| ||||| |
Sbjct 1897 TGAGTTTCTTCTCGCGTG-TTTCGTTTCTTCTCTA--TATATGT-T-TAT--GGATT-TG 1948
Query 2013 -GAGTGTAAAAACTTAAATTCTGAGATTTGT 2042
||||||||||||||||||||||||||||||
Sbjct 1949 AGAGTGTAAAAACTTAAATTCTGAGATTTGT 1979
Score = 63.9 bits (34), Expect = 5e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 38 TATGTGTGTGTGTATATATATACATACTCATCCACAAAAA 77
||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1 TATATGTGTGTATATATATATACATACTCATCCACAAAAA 40
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83531907285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5