BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53230.1
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474447 jgi|Araly1|474447|fgenesh2_kg.1__4401__AT1G53230.1 2285 0.0
Ahg929286 jgi|Araly1|929286|scaffold_301743.1 261 1e-68
Ahg933639 jgi|Araly1|933639|scaffold_401627.1 134 3e-30
> Ahg474447 jgi|Araly1|474447|fgenesh2_kg.1__4401__AT1G53230.1
Length=1604
Score = 2285 bits (1237), Expect = 0.0
Identities = 1447/1544 (94%), Gaps = 32/1544 (2%)
Strand=Plus/Plus
Query 185 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGCCGTCATAATCCAAC 244
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGTCGTCATAACCCAAC 60
Query 245 CACCACCACCATCAACGACCTTGAATTTCCACAATATGCTTCATCAATGGCACCAGATAA 304
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CACCACAACCATCAACGACCTTGAATTTCCTCAATATGCTTCATCAATGGCACCAGATAA 120
Query 305 CGACCATTTCTTAGATTCTCCGTCGCCGCCTCTTCTAGAGATGAGACACCACCAATCAGC 364
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 CGACCATTTAATAGATTCTCCGTCGCCGCCTCTTCTTGAGATGAGACACCACCAATCGGC 180
Query 365 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTTCAAGGAGGTCACATTGTTCG 240
Query 425 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCG 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTCTGTACAGCGAAAGGACCACGTGACCG 300
Query 485 GCGCGTGAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGG 544
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 GCGCGTGAGGCTCTCTGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGGCTTGG 360
Query 545 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 420
Query 605 TGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGC 664
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 TGATCTCGCTCAGCTTCCTCCTTGGAACCCCGCCGATACACTTCGTCAACACGCCGCCGC 480
Query 665 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAATTTCTCCGCC-AC-C-GCCACA 721
||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||
Sbjct 481 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAGTTTCTCCGCCGCCGCTGCCACA 540
Query 722 A------CCG---GAAGAAACAGAG---CATCAT---CGAATCGGAGAAGAAGAAGATAA 766
| ||| |||||||||||| |||||| | ||||||||||||||||| |||
Sbjct 541 ACCTCCGCCGCACGAAGAAACAGAGCATCATCATCAACAAATCGGAGAAGAAGAAGTTAA 600
Query 767 CGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 826
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAATCGAGTTTTCTTCCCGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 660
Query 827 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAA 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGCCAA 720
Query 887 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCTTT 946
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTTCAAAATGGTCCACCTTT 780
Query 947 TCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATAATCAGTTAGCGTTTGA 1006
||| || |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 781 TCCCAACCAAACAGAGCCTGCTCTGTTCTCCGGCCAGAGCAATAATCCGTTAGGGTTTGA 840
Query 1007 CTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCACCGGAATTTGGAAAGATACAGAG 1066
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 CACATCGACGGCAAGCTGGGAACAGAATCATCAGTCACCGGAATTTGGAAAGATACAGAG 900
Query 1067 ACTAGTGTCATGGAACAACGTCGGAGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGT 1126
||| ||| |||||||||||| |||||||||||| |||||||||| |||||||| ||||
Sbjct 901 ACTGGTGACATGGAACAACGGCGGAGCAGCTGATTCCGCCGGAA---CCGGAGGAGTTGT 957
Query 1127 GTTTGCTTCTCCGTCGTCGTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAG 1186
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct 958 GTTTGCTTCTCCGTCGTCGTTGCAGCCAGTTTTTAGCCAAAGTCAGCTTTTATCTCAGAG 1017
Query 1187 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACcatca 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCATCA 1077
Query 1247 tcatcatcatcatcaGCAGTCCATGACCACTGACGATCTCCACCATCATCATCC-CTACC 1305
|||||||||||| | ||||| |||||||||||||||||||| |||||||| | |||
Sbjct 1078 TCATCATCATCA---G---TCCATTACCACTGACGATCTCCACCACCATCATCCTC-ACC 1130
Query 1306 ATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1365
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1131 ATATTCCTCCGGGGATTCACCAATCAGCGATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1190
Query 1366 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCG 1425
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1191 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAGGGCGAACAAGAGGAGCATGGCGGCG 1250
Query 1426 ACAACAAGCCGTCCTCTGCTTCATCCGATTCTCGCCATTAAACAAGTTCCAAAAACACAT 1485
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1251 ACAACAAGCCGTCGTCTGCTTCATCCGATTCTCGCCATTGAACAAGTTCCAAAAACACAT 1310
Query 1486 AAGATTGTGCAACACAACAGGTTTCTTTTCATATTCCAGGGCGCTTCGAATGCGTGGAAT 1545
|||| | |||||||| || |||||||||||||||| |||||||||||||||||||| |||
Sbjct 1311 AAGAATCTGCAACACTACTGGTTTCTTTTCATATTTCAGGGCGCTTCGAATGCGTGTAAT 1370
Query 1546 AGTGAAGGCGGTTTTCGTTGTTGTGTGTTTCGAATATCCAAATGGCCTATAAATCTGATC 1605
|| |||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1371 AGGGAAGACGTTTTTCGTTGTTGTGTGTTTCGGATATTCAAATGGCCTATAAATCTGATC 1430
Query 1606 AACAGTTTCAGGTTCTTCTTAAGTCTT-TAAAAGCCTAGGCCTTGGTTAATTTGAATTCA 1664
||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||| ||||
Sbjct 1431 AACAGTTTCAGGTTCATCTTAA-TCTTCTAAA-GCCTAGGCCTTTGTTAATTTGAGTTCA 1488
Query 1665 TCTTGTATCAATTAGAGAACGTTCTGTAAGTTCAATTCTGTTTT 1708
|||||||||||||||| ||| |||||| ||||||||| ||||||
Sbjct 1489 TCTTGTATCAATTAGAAAACTTTCTGTTAGTTCAATTATGTTTT 1532
> Ahg929286 jgi|Araly1|929286|scaffold_301743.1
Length=1402
Score = 261 bits (141), Expect = 1e-68
Identities = 385/494 (78%), Gaps = 51/494 (10%)
Strand=Plus/Plus
Query 384 TGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGA- 442
||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 201 TGCGGCGAGATCGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGAT 260
Query 443 CAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGTGAGACTCTCAGC 502
| | || || ||||| || || || |||||||||||||||||||||||||| ||||| ||
Sbjct 261 C-GCCACAGCAAAGTCTGCACGGCCAAAGGACCACGTGACCGGCGCGTGAGGCTCTCTGC 319
Query 503 TC-CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGGTTTTGATCGACCAAGTA 561
|| | ||||||||||| ||||||||||||||||| || |||||||| || || || || |
Sbjct 320 TCAC-ACGGCGATTCAGTTCTACGATGTTCAAGACAGGCTTGGTTTCGACCGCCCTAGCA 378
Query 562 AAGCTGTTGATTGGCTTATTACTAAA-GCTAAATCCGCCATTGATGATCTTGCTCAGCTT 620
|||| |||||||||||||| | ||| ||||| || ||||||| || || ||| |||||
Sbjct 379 AAGCCGTTGATTGGCTTATCA-AAAAGGCTAAGTCTTCCATTGACGAGCTCGCTGAGCTT 437
Query 621 CCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAA 680
||||| ||||| ||||||| | | | ||| |||| || |||||||||||||||
Sbjct 438 CCTCCCTGGAATCCCGCCG--A----T-G-CAATTCGCC-TAGCCGCTGCTAACGCTAAA 488
Query 681 CCCAGAA-AA--A---CCAAAACTTTAATTTC-TC--CGCCACCGCCACAACCGGAA-GA 730
||||||| || | ||||||| ||| || | |||| ||||| |||| | || |
Sbjct 489 CCCAGAAGAACCACCGCCAAAACCCAAATCTCGCCGTCGCCCCCGCCGCAACAGCAACAA 548
Query 731 -AACAG----AG---CA--TC-AT-C--GAATCG---GA-GA--AG-A-AG-A--AGA-T 764
||||| || || || | | || ||| || || || | || | || |
Sbjct 549 CAACAGCAACAGCTTCAGTTCGGTGCTGGATTCGACAGAGGAGGAGCAGAGCATCCGAGT 608
Query 765 AACGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAG 824
||||| || |||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 609 AACGAGTCCAGTTTTCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAG 668
Query 825 TCGTTTTTTCCGGT 838
||||||||||||||
Sbjct 669 TCGTTTTTTCCGGT 682
> Ahg933639 jgi|Araly1|933639|scaffold_401627.1
Length=1125
Score = 134 bits (72), Expect = 3e-30
Identities = 174/222 (78%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 390 GAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG-GTCAACAGGAAGAAAAGA-CAGAC 447
||||| || ||||| ||||| ||||| || | || | | || ||| | ||||| | | |
Sbjct 62 GAGATAGTTGAGGTTCAAGGCGGTCATATAATCCGAG-CCACGGGACGCAAAGATC-GCC 119
Query 448 ATAGTAAAGTATGT-ACAGCGAAA-GGACCACGTGACCGGCGCGTGAGACTCTCAGCTC- 504
|||| ||||| | | ||| | ||| || |||||||||||||||||||||||||||||||
Sbjct 120 ATAGCAAAGTCT-TCACATC-AAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCA 177
Query 505 CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTT-GGTTTTGATCGACCAAGTAAA 563
| ||||||||||||||||||||||| ||||| | || || | ||| || || || |||
Sbjct 178 C-ACGGCGATTCAATTCTACGATGTGCAAGACCGG-TTAGGGTATGACCGGCCTAGCAAA 235
Query 564 GCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGAT 605
|| || |||||||| || | ||||| ||| ||||||| |||
Sbjct 236 GCCGTAGATTGGCTCATCAAGAAAGCCAAAACCGCCATCGAT 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5