BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53230.1 Length=1844 Score E Sequences producing significant alignments: (Bits) Value Ahg474447 jgi|Araly1|474447|fgenesh2_kg.1__4401__AT1G53230.1 2285 0.0 Ahg929286 jgi|Araly1|929286|scaffold_301743.1 261 1e-68 Ahg933639 jgi|Araly1|933639|scaffold_401627.1 134 3e-30 > Ahg474447 jgi|Araly1|474447|fgenesh2_kg.1__4401__AT1G53230.1 Length=1604 Score = 2285 bits (1237), Expect = 0.0 Identities = 1447/1544 (94%), Gaps = 32/1544 (2%) Strand=Plus/Plus Query 185 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGCCGTCATAATCCAAC 244 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1 AACGACTCTGGATTCCTCGGCGGTTAACGACCGCCGTCGCCGCCGTCGTCATAACCCAAC 60 Query 245 CACCACCACCATCAACGACCTTGAATTTCCACAATATGCTTCATCAATGGCACCAGATAA 304 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 CACCACAACCATCAACGACCTTGAATTTCCTCAATATGCTTCATCAATGGCACCAGATAA 120 Query 305 CGACCATTTCTTAGATTCTCCGTCGCCGCCTCTTCTAGAGATGAGACACCACCAATCAGC 364 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 121 CGACCATTTAATAGATTCTCCGTCGCCGCCTCTTCTTGAGATGAGACACCACCAATCGGC 180 Query 365 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG 424 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 181 GACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTTCAAGGAGGTCACATTGTTCG 240 Query 425 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCG 484 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 GTCAACAGGAAGAAAAGACAGACATAGTAAAGTCTGTACAGCGAAAGGACCACGTGACCG 300 Query 485 GCGCGTGAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGG 544 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 301 GCGCGTGAGGCTCTCTGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGGCTTGG 360 Query 545 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGA 420 Query 605 TGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGC 664 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 421 TGATCTCGCTCAGCTTCCTCCTTGGAACCCCGCCGATACACTTCGTCAACACGCCGCCGC 480 Query 665 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAATTTCTCCGCC-AC-C-GCCACA 721 ||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||| Sbjct 481 TGCTGCTAACGCTAAACCCAGAAAAACCAAAACTTTAGTTTCTCCGCCGCCGCTGCCACA 540 Query 722 A------CCG---GAAGAAACAGAG---CATCAT---CGAATCGGAGAAGAAGAAGATAA 766 | ||| |||||||||||| |||||| | ||||||||||||||||| ||| Sbjct 541 ACCTCCGCCGCACGAAGAAACAGAGCATCATCATCAACAAATCGGAGAAGAAGAAGTTAA 600 Query 767 CGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 826 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGAATCGAGTTTTCTTCCCGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTC 660 Query 827 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAA 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 661 GTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGCCAA 720 Query 887 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCTTT 946 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 721 TACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTTCAAAATGGTCCACCTTT 780 Query 947 TCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATAATCAGTTAGCGTTTGA 1006 ||| || |||||||| ||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 781 TCCCAACCAAACAGAGCCTGCTCTGTTCTCCGGCCAGAGCAATAATCCGTTAGGGTTTGA 840 Query 1007 CTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCACCGGAATTTGGAAAGATACAGAG 1066 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 841 CACATCGACGGCAAGCTGGGAACAGAATCATCAGTCACCGGAATTTGGAAAGATACAGAG 900 Query 1067 ACTAGTGTCATGGAACAACGTCGGAGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGT 1126 ||| ||| |||||||||||| |||||||||||| |||||||||| |||||||| |||| Sbjct 901 ACTGGTGACATGGAACAACGGCGGAGCAGCTGATTCCGCCGGAA---CCGGAGGAGTTGT 957 Query 1127 GTTTGCTTCTCCGTCGTCGTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAG 1186 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| Sbjct 958 GTTTGCTTCTCCGTCGTCGTTGCAGCCAGTTTTTAGCCAAAGTCAGCTTTTATCTCAGAG 1017 Query 1187 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACcatca 1246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 GGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCATCA 1077 Query 1247 tcatcatcatcatcaGCAGTCCATGACCACTGACGATCTCCACCATCATCATCC-CTACC 1305 |||||||||||| | ||||| |||||||||||||||||||| |||||||| | ||| Sbjct 1078 TCATCATCATCA---G---TCCATTACCACTGACGATCTCCACCACCATCATCCTC-ACC 1130 Query 1306 ATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1365 |||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1131 ATATTCCTCCGGGGATTCACCAATCAGCGATTCCAGGCATTGCATTTGCTTCAAGTGGTG 1190 Query 1366 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCG 1425 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1191 AATTCTCCGGTTTTCGTATACCAGCACGGTTTCAGGGCGAACAAGAGGAGCATGGCGGCG 1250 Query 1426 ACAACAAGCCGTCCTCTGCTTCATCCGATTCTCGCCATTAAACAAGTTCCAAAAACACAT 1485 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1251 ACAACAAGCCGTCGTCTGCTTCATCCGATTCTCGCCATTGAACAAGTTCCAAAAACACAT 1310 Query 1486 AAGATTGTGCAACACAACAGGTTTCTTTTCATATTCCAGGGCGCTTCGAATGCGTGGAAT 1545 |||| | |||||||| || |||||||||||||||| |||||||||||||||||||| ||| Sbjct 1311 AAGAATCTGCAACACTACTGGTTTCTTTTCATATTTCAGGGCGCTTCGAATGCGTGTAAT 1370 Query 1546 AGTGAAGGCGGTTTTCGTTGTTGTGTGTTTCGAATATCCAAATGGCCTATAAATCTGATC 1605 || |||| || ||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 1371 AGGGAAGACGTTTTTCGTTGTTGTGTGTTTCGGATATTCAAATGGCCTATAAATCTGATC 1430 Query 1606 AACAGTTTCAGGTTCTTCTTAAGTCTT-TAAAAGCCTAGGCCTTGGTTAATTTGAATTCA 1664 ||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||| |||| Sbjct 1431 AACAGTTTCAGGTTCATCTTAA-TCTTCTAAA-GCCTAGGCCTTTGTTAATTTGAGTTCA 1488 Query 1665 TCTTGTATCAATTAGAGAACGTTCTGTAAGTTCAATTCTGTTTT 1708 |||||||||||||||| ||| |||||| ||||||||| |||||| Sbjct 1489 TCTTGTATCAATTAGAAAACTTTCTGTTAGTTCAATTATGTTTT 1532 > Ahg929286 jgi|Araly1|929286|scaffold_301743.1 Length=1402 Score = 261 bits (141), Expect = 1e-68 Identities = 385/494 (78%), Gaps = 51/494 (10%) Strand=Plus/Plus Query 384 TGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGA- 442 ||||||||||| || ||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 201 TGCGGCGAGATCGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGAT 260 Query 443 CAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGTGAGACTCTCAGC 502 | | || || ||||| || || || |||||||||||||||||||||||||| ||||| || Sbjct 261 C-GCCACAGCAAAGTCTGCACGGCCAAAGGACCACGTGACCGGCGCGTGAGGCTCTCTGC 319 Query 503 TC-CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGGTTTTGATCGACCAAGTA 561 || | ||||||||||| ||||||||||||||||| || |||||||| || || || || | Sbjct 320 TCAC-ACGGCGATTCAGTTCTACGATGTTCAAGACAGGCTTGGTTTCGACCGCCCTAGCA 378 Query 562 AAGCTGTTGATTGGCTTATTACTAAA-GCTAAATCCGCCATTGATGATCTTGCTCAGCTT 620 |||| |||||||||||||| | ||| ||||| || ||||||| || || ||| ||||| Sbjct 379 AAGCCGTTGATTGGCTTATCA-AAAAGGCTAAGTCTTCCATTGACGAGCTCGCTGAGCTT 437 Query 621 CCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAA 680 ||||| ||||| ||||||| | | | ||| |||| || ||||||||||||||| Sbjct 438 CCTCCCTGGAATCCCGCCG--A----T-G-CAATTCGCC-TAGCCGCTGCTAACGCTAAA 488 Query 681 CCCAGAA-AA--A---CCAAAACTTTAATTTC-TC--CGCCACCGCCACAACCGGAA-GA 730 ||||||| || | ||||||| ||| || | |||| ||||| |||| | || | Sbjct 489 CCCAGAAGAACCACCGCCAAAACCCAAATCTCGCCGTCGCCCCCGCCGCAACAGCAACAA 548 Query 731 -AACAG----AG---CA--TC-AT-C--GAATCG---GA-GA--AG-A-AG-A--AGA-T 764 ||||| || || || | | || ||| || || || | || | || | Sbjct 549 CAACAGCAACAGCTTCAGTTCGGTGCTGGATTCGACAGAGGAGGAGCAGAGCATCCGAGT 608 Query 765 AACGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAG 824 ||||| || |||||||| ||| ||||||||||||| |||||||||||||||||||||||| Sbjct 609 AACGAGTCCAGTTTTCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAG 668 Query 825 TCGTTTTTTCCGGT 838 |||||||||||||| Sbjct 669 TCGTTTTTTCCGGT 682 > Ahg933639 jgi|Araly1|933639|scaffold_401627.1 Length=1125 Score = 134 bits (72), Expect = 3e-30 Identities = 174/222 (78%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 390 GAGATTGTGGAGGTACAAGGAGGTCACATTGTTCG-GTCAACAGGAAGAAAAGA-CAGAC 447 ||||| || ||||| ||||| ||||| || | || | | || ||| | ||||| | | | Sbjct 62 GAGATAGTTGAGGTTCAAGGCGGTCATATAATCCGAG-CCACGGGACGCAAAGATC-GCC 119 Query 448 ATAGTAAAGTATGT-ACAGCGAAA-GGACCACGTGACCGGCGCGTGAGACTCTCAGCTC- 504 |||| ||||| | | ||| | ||| || ||||||||||||||||||||||||||||||| Sbjct 120 ATAGCAAAGTCT-TCACATC-AAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCA 177 Query 505 CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTT-GGTTTTGATCGACCAAGTAAA 563 | ||||||||||||||||||||||| ||||| | || || | ||| || || || ||| Sbjct 178 C-ACGGCGATTCAATTCTACGATGTGCAAGACCGG-TTAGGGTATGACCGGCCTAGCAAA 235 Query 564 GCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGAT 605 || || |||||||| || | ||||| ||| ||||||| ||| Sbjct 236 GCCGTAGATTGGCTCATCAAGAAAGCCAAAACCGCCATCGAT 277 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69248065410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5