BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53240.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474449 jgi|Araly1|474449|fgenesh2_kg.1__4403__AT1G53240.1 2206 0.0
Ahg478929 jgi|Araly1|478929|fgenesh2_kg.3__1630__AT3G15020.2 1064 0.0
Ahg487785 jgi|Araly1|487785|fgenesh2_kg.6__919__AT5G09660.1 110 4e-23
> Ahg474449 jgi|Araly1|474449|fgenesh2_kg.1__4403__AT1G53240.1
Length=1422
Score = 2206 bits (1194), Expect = 0.0
Identities = 1315/1373 (96%), Gaps = 9/1373 (1%)
Strand=Plus/Plus
Query 77 CAGATTCGTC-AGCTCACTCTTTCCTCTCCAGAAGAAACCCTAGACATCTCATCGCCAAA 135
||| ||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 16 CAGCTTCTTCAAGCTCACTCTTTCCTCTCCAGAAGAAACCCTAGAAATCTCATCG-CAAA 74
Query 136 -ATGTTCAGATCTATGCTCGTCCGATCTTCTGCCTCCGCGAAGCAGGCGGTTATCCGCCG 194
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 75 TATGTTCAGATCTATGCTCGTCCGATCTTCTTCCTCTGCGAAGCAGGCGGTTATCCGCCG 134
Query 195 TAGCTTCTCCTCCGGCTCCGTCCCCGAGCGTAAAGTCGCCATCCTTGGTGCCGCCGGTGG 254
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 135 TAGCTTCTCCTCCGGTTCCGTCCCCGAGCGTAAAGTCGCCATCCTCGGTGCCGCCGGTGG 194
Query 255 AATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCCCTCTCCCT 314
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 195 AATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCTCTCTCCCT 254
Query 315 CTACGATATCGCTAACACTCCTGGAGTTGCTGCTGATGTTGGTCACATCAACACCAGATC 374
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 255 CTACGATATCGCTAACACTCCTGGAGTTGCCGCTGATGTCGGTCACATCAACACCAGATC 314
Query 375 TGAGGTTGTTGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGCTGATCT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TGAGGTTGTTGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGCTGATCT 374
Query 435 CGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCTTTTCAA 494
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CGTTATTATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCTTTTCAA 434
Query 495 CATTAATGCTGGAATTGTCAAGAACCTTTGCACTGCCATCGCCAAGTACTGCCCACATGC 554
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CATTAACGCTGGAATTGTCAAGAACCTTTGCACTGCCATCGCCAAGTACTGCCCACATGC 494
Query 555 GCTTATTAATATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCAGCTGAGATATT 614
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 ACTTATTAACATGATCAGCAACCCTGTGAACTCTACTGTTCCAATCGCAGCTGAGATATT 554
Query 615 TAAGAAGGCTGGTATGTACGATGAAAAGAAATTGTTTGGTGTTACCACTCTTGACGTCGT 674
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 555 CAAGAAGGCTGGTATGTACAATGAAAAGAAATTGTTTGGTGTTACCACTCTTGACGTTGT 614
Query 675 CAGGGCCAGGACTTTCTATGCTGGAAAGGCAAATGTCCCAGTTGCAGAAGTTAATGTTCC 734
|||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 615 CAGGGCCAAGACTTTCTATGCGGGAAAGGCCAATGTCCCAGTTGCAGAAGTTAATGTTCC 674
Query 735 GGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGCAACTCCTCA 794
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 675 GGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGCCACTCCTCA 734
Query 795 AGCCAACTTGTCAAGTGACATACTTACCGCCCTTACTAAGCGTACCCAAGATGGAGGTAC 854
|||||| |||||||||||| |||| || ||||| ||||||||||||||||||||||||||
Sbjct 735 AGCCAATTTGTCAAGTGACGTACTCACTGCCCTCACTAAGCGTACCCAAGATGGAGGTAC 794
Query 855 AGAAGTCGTGGAGGCAAAAGCAGGAAAAGGTTCAGCTACATTGTCCATGGCCTATGCCGG 914
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 795 AGAAGTCGTGGAGGCAAAAGCTGGAAAAGGTTCAGCTACATTGTCAATGGCCTATGCTGG 854
Query 915 AGCATTGTTCGCTGATGCATGCTTGAAAGGACTCAACGGTGTTCCAGATGTCATAGAATG 974
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGCATTATTCGCTGATGCGTGCTTGAAAGGACTCAACGGTGTTCCAGATGTCATAGAATG 914
Query 975 CTCATACGTGCAATCTACAATCACCGAGCTTCCTTTCTTTGCCTCGAAGGTGAGGTTGGG 1034
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTCATACGTGCAATCAACAATCACCGAGCTTCCTTTCTTTGCCTCGAAGGTGAGGTTGGG 974
Query 1035 GAAGAATGGTGTGGAGGAGGTTCTTGACTTGGGACCACTCTCAGACTTTGAGAAGGAAGG 1094
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 975 GAAGAACGGCGTGGAGGAGGTTCTTGACTTGGGGCCACTCTCAGACTTTGAGAAGGAAGG 1034
Query 1095 CTTGGAAGCATTGAAGCCAGAACTCAAGTCCTCCATAGAAAAGGGAGTCAAGTTTGCCAA 1154
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1035 CTTGGAAGCATTGAAGCCAGAACTCAAATCCTCCATCGAAAAGGGAGTCAAGTTTGCCAA 1094
Query 1155 CCAGTGATTAAACCGAGTTTACTCGGTAATTTTTCCAATTTTCCAGCTAGAGTTGCCACC 1214
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1095 CCAGTGATTAAACCGACTTGACTCGGTAATTTTTCCAATTTTCCAGCTAGAGTTGCCTCC 1154
Query 1215 TCCTCCTTCATCGGGTTGTATCAATAAAAAATCCATGTTTGTGCCTCCATTAGTGAAACC 1274
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1155 TCCTCTTTCATCGGGTTGTATCAATAAAAA-TCCATGTTTGTGCCTCCATTAGTGAAACC 1213
Query 1275 ATAAGGCTCTTTTTGGTTAATCACCAAACTCAAAGAAAAACTGTAACATGTCAAAGTTGT 1334
|||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||| |
Sbjct 1214 ATAAGGCTCTTT--GGTTAATCACCAAACACAAAGTAAAACTGTAACATGTCAA-GTTAT 1270
Query 1335 AATTCTTTCTTCCTTTTTGGAACCATGCGACtttttttt-C-ATGAACAAGAGATCATAA 1392
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1271 GATTCTTTCTTCCTTTTTGGAACCATGCGACTTTTTTTTTCCATGAACAAGAGATCATAA 1330
Query 1393 GTGTGGGTTGGTTCCTTTTTAATGCTGCGTCTGTGTCACCATACTTTCTGTTT 1445
||||||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1331 GTGTGGGTTGGTTCCTTCTTAATGCTGAGTCTGTGTTACCATACTTTCTGTTT 1383
> Ahg478929 jgi|Araly1|478929|fgenesh2_kg.3__1630__AT3G15020.2
Length=1199
Score = 1064 bits (576), Expect = 0.0
Identities = 889/1040 (85%), Gaps = 22/1040 (2%)
Strand=Plus/Plus
Query 133 AAAATGTTCAGATCTATGCTCGTCCGATCTTCTGCCTCC-GCGAAGCAGGCGG-TTATCC 190
||||||||| |||| ||||| || ||||| || || || | |||||||| || || |||
Sbjct 12 AAAATGTTCCGATCAATGCTTGTTCGATCCGCTTCC-CCAGTGAAGCAGG-GGCTTCTCC 69
Query 191 GCCGTA-GCTTCTCCTCCGGCTCCGTCCCCGAGCGTAAAGTCGCCATCCTTGGTGCCGCC 249
|| | | | ||| |||| | || || ||||| || ||||||| |||||| |||||||||
Sbjct 70 GCAG-AGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCGGTGCCGCC 128
Query 250 GGTGGAATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCCCTC 309
|||||||| || ||||| ||| ||||||||||||||||||| ||||| ||||| || |||
Sbjct 129 GGTGGAATCGGCCAGCCACTTTCTCTCCTCATGAAGCTTAACCCTCTCGTCTCCTCTCTC 188
Query 310 TCCCTCTACGATATCGCTAACACTCCTGGAGTTGCTGCTGATGTTGGTCACATCAACACC 369
|||||||| |||||||| |||||||| || ||||| ||||| || || ||||||||||||
Sbjct 189 TCCCTCTATGATATCGCCAACACTCCCGGCGTTGCCGCTGACGTCGGCCACATCAACACC 248
Query 370 AGATCTGAGGTTGT-TGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGC 428
||||| ||| | | |||||||||||| |||||||| |||| |||||||| ||||||||
Sbjct 249 CGATCTCAGG-TATCTGGATACATGGGTGATGATAATTTGGGGAAAGCTCTAGAAGGAGC 307
Query 429 TGATCTCGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT 488
||| ||||| || |||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 308 TGACCTCGTCATTATTCCAGCTGGTGTCCCGAGGAAGCCTGGCATGACCCGTGATGATCT 367
Query 489 TTTCAACATTAATGCTGGAATTGTCAAGAACCTTTGCACT-GCCATCGCCAAGTACTGCC 547
|||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||||||
Sbjct 368 TTTCAACATTAATGCTGGCATTGTCAAGAACCTTAGCA-TCGCCATCGCCAAGTACTGCC 426
Query 548 CACATGCGCTTATTAATATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCAGCTG 607
| || |||||| | || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 427 CTCAAGCGCTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCTATTGCAGCTG 486
Query 608 AGATATTTAAGAAGGCTGGTATGTACGATGAAAAGAAATTGTTTGGTGTTACCACTCTTG 667
|||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 487 AGATTTTTAAGAAGGCTGGTACCTACGATGAGAAGAAATTGTTTGGTGTTACCACTCTTG 546
Query 668 ACGTCGTCAGGGCCAGGACTTTCTATGCTGGAAAGGCAAATGTCCCA-GTTGCAGAAGTT 726
|||| |||||||||| |||||||||||| ||||| ||||| || | |||||||| |||
Sbjct 547 ACGTTGTCAGGGCCAAGACTTTCTATGCGGGAAAATCAAATCTCA-ATGTTGCAGAGGTT 605
Query 727 AATGTTCCGGT-GATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGC 785
|||||||| || | |||||||||||||||| |||| ||||| |||||||| ||||||||
Sbjct 606 AATGTTCCAGTTG-TTGGTGGTCATGCTGGTATTACGATTCTTCCTCTCTTTTCTCAGGC 664
Query 786 AA-CTCCTCAAGCCAACTTGTCA-AGTGACATACTTACCGCCCTTACTAAGCGTACCCAA 843
| | ||||||||||||||||| | ||| || | | ||||| || |||||||||||
Sbjct 665 TAGC-CCTCAAGCCAACTTGTCGGA-TGATTTAATCAAGGCCCTCACAAAGCGTACCCAG 722
Query 844 GATGGAGGTACAGAAGTCGTGGAGGCAAAAGCAGGAAAAGGTTCAGCTACATTGTCCATG 903
|| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 723 GACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAATG 782
Query 904 GCCTATGCCGGAGCATTGTTCGCTGATGCATGCTTGAAAGGACTCAACGGTGTTCCAGAT 963
|||||||| |||||| | || ||||||| ||||||||| |||||||||||||||||||||
Sbjct 783 GCCTATGCGGGAGCACTCTTTGCTGATGGATGCTTGAAGGGACTCAACGGTGTTCCAGAT 842
Query 964 GTCATAGAATGCTCATACGTGCAATCTACAATCACCGAGCTTCCTTTCTTTGCCTCGAAG 1023
|| | |||||||||| ||| |||||||| |||||||||||||||||||| ||||| |||
Sbjct 843 GTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAAAG 902
Query 1024 GTGAGG-TTGGGGAAGAATGGTGTGGAGGAGGTTCTTGA-CTTGGGACCACTCTCAGACT 1081
|| || ||||| ||||| || |||||||| || || || |||||| |||||||||||||
Sbjct 903 GTAAGACTTGGG-AAGAACGGAGTGGAGGAAGTGCTAGATCTTGGG-CCACTCTCAGACT 960
Query 1082 TTGAGAAGGAAGGCTTGGAAGCATTGAAGCCAGAACTCAAGTCCTCCATAGAAAAGGGAG 1141
|||| ||||||||||| ||||| | ||| |||||||||| ||||| || || ||||||
Sbjct 961 TTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGAA 1020
Query 1142 TCAAGTTTGCCAACCAGTGA 1161
|||| ||||||||||| |||
Sbjct 1021 TCAAATTTGCCAACCAATGA 1040
> Ahg487785 jgi|Araly1|487785|fgenesh2_kg.6__919__AT5G09660.1
Length=1281
Score = 110 bits (59), Expect = 4e-23
Identities = 158/204 (77%), Gaps = 14/204 (7%)
Strand=Plus/Plus
Query 430 GATCTCGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT- 488
||||| || ||||| |||||||||||||| ||||| || || |||||||| || |||||
Sbjct 423 GATCTTGTGATCATACCAGCTGGTGTACCGAGGAAACCAGGGATGACCCGGGATGATCTG 482
Query 489 TTTCAACATTAATGCTGGAATTGTCAAGAAC-CT-T-TGCACTGCCATCGCCAAGTACTG 545
||| || || |||||||| ||||| ||| || || | || | | | || || | ||
Sbjct 483 TTT-AAAATCAATGCTGGGATTGTTAAG-ACACTATGTG-A-AGGTGTAGCAAAATGTTG 538
Query 546 -CCCACATGCGCTTATTAA-TATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCA 603
|| | |||| || | || | |||||||||||||||||||||||||||| || |||||
Sbjct 539 TCCTA-ATGCTATTGTCAACT-TGATCAGCAACCCTGTGAACTCTACTGTCCCCATTGCC 596
Query 604 GCTGAGATATTT-AAGAAGGCTGG 626
|||||| | ||| ||||| |||||
Sbjct 597 GCTGAGGT-TTTCAAGAAAGCTGG 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5