BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53250.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474450 jgi|Araly1|474450|fgenesh2_kg.1__4404__AT1G53250.1 1604 0.0
> Ahg474450 jgi|Araly1|474450|fgenesh2_kg.1__4404__AT1G53250.1
Length=1225
Score = 1604 bits (868), Expect = 0.0
Identities = 1122/1239 (91%), Gaps = 40/1239 (3%)
Strand=Plus/Plus
Query 90 TTGTCTCCTGTTCGTCTCCGTGCCGTGTATGTCACTAAATTTAGGTTTATCAATGGAGAT 149
|||||||||||| |||| ||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 22 TTGTCTCCTGTTTGTCTTCGTGCCG-GTATGTCACTACATTTAGGTTTATCGATGGAGAT 80
Query 150 GAAATGCACATTTCAATCAACTCGTGCTCCATTCCAATGCGCTTGGTGGTTCCCAAATTC 209
||||| | |||||||||||| ||| |||||| ||| |||||| | | |
Sbjct 81 GAAATACCCATTTCAATCAATTCGGGCTCCAATCCGATGCGC------G-------A-T- 125
Query 210 AATCTATTGGACTCTCAAAGAACCAATCGTTTTGAGAATACCTAATTCACTTGCTTCTTT 269
| ||||||| |||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 126 --T-TATTGGAATCTCAAAGAACCCGTCATTTTGAGAGTATCTAATTCACTTGCTTCTTT 182
Query 270 GAGGTCTATCAGACACTTGGAGTTGAAATCTGTAGGTTCATTGTACAATGTGTTTGAGAT 329
||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 183 GAGTTGTATCAGACAATTGGAATTGAAATCTGTAGGTTCATTGTACAATGTGTTTGAGAC 242
Query 330 TCATAGGAAAGAAGTCAATTCAAGTCTTTTGGAAGTGAAAGCTATGAACAAAGATACTGA 389
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 243 TCATAACAAAGAAGTCAATTCAAGTGTTTTGGAAGTGAAGGCTATGAACAAAGATACTGA 302
Query 390 AGCTGATAGTGATAGTGATAGGAAGATTAAAGAAGAGGAAAGGAGAAGGAAGATTGGATT 449
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 AGCTGATAGTGATAGTGATAGGAAGATCAAAGAAGAGGAAAGGAGAAGGAAGATTGGATT 362
Query 450 AGCTAATAAAGGAAAGGTGCCATGGAACAAAGGAAGGAAACACAGTGAAGACACTCGAAG 509
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGCTAATAAAGGAAAGGTTCCATGGAACAAAGGAAGGAAACACAGTGAAGACACTCGAAG 422
Query 510 ACGAATCAAGCAGAGAACAATCGAAGCTTTGACAAATCCCAAGGTTCGGAAGAAGATGTC 569
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 423 ACGCATCAAGCAGAGAACAATCGAAGCTTTGAGAAATCCCAAGGTTCGGAAGAAGATGTC 482
Query 570 CGATCATCAACAACCACACAGTAATGAAACCAAGGAGAAGATAAGAGCTTCAGTGAAACA 629
|| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 483 TGAGCATCAACAACCACACAGTGATGAAACCAAGGAGAAGATACGAGCTTCAGTGAAACA 542
Query 630 AGTTTGGGCAGAACGGTCAAGATCGAAGCGATTAAAGGAGAAGTTCATGTCATCGTGGTC 689
||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 543 AGTTTGGGCTGAACGGTCAAGGTCAAAGCGATTAAAGGAGAAGTTCACGTCATCGTGGTC 602
Query 690 AGAAAACATTGCAGAAGCTGCAAGGAAAGGAGGAAGTGGCGAGGCAGAACTTGACTGGGA 749
|||||||||||||||||||| |||||||||||||||||||| | |||||| || |||||
Sbjct 603 GGAAAACATTGCAGAAGCTGCTAGGAAAGGAGGAAGTGGCGAAGTAGAACTCGAGTGGGA 662
Query 750 CAGCTATGAAAAAATAAAACAAGATTTTTCATCTGAGCAGCTTCAGTTAGCTGAAGAGAA 809
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 663 CAGCTATGAAAGAATAAAACAAGATTTTTCATCCGAGCAGCTTCAGTTAGCTGAAGAGAA 722
Query 810 AGCAAGAGCTAAGGAACAAACCAAGATGATAGCAAAAGAAGCTGCAAAAGCCAGGACCGA 869
||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 723 AGCAAGAGCAAAGGAACAAACCAAGATGATAGCAAAAAAAGCTGCACAAGCCAGGACCGA 782
Query 870 GAAGATGAGGAGAGCT-GCAGaaaaaaaGAAAGAACGTGAGGAGAAAGACCGACGAGAAG 928
||| ||||||| || | ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 783 GAAAATGAGGA-AGGTTGCAGAAAGAAAGAAAGAACGTGAAGAGAAAGACCGACGAGAAG 841
Query 929 GAAAGATTCGAAAGCCAAAGCAGGAAAGGGAGAATCCAACCATTGCTTCACGTTCTAAAC 988
||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||
Sbjct 842 GAAAGATTCGAAAGCCAAATCAGAAAAGGGAGAATCCAACCATTGTTTCACGCTCTAAAC 901
Query 989 TAAAGAAGAGACTAACAAAGATTCACAAGAAGAAAACAAGTCTTGGTAAGATCGCAATTG 1048
| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 902 TGAAGAAGAGACTAACAAAGATTCACAAGAAGAAAACAAGTCTTGGCAAAATCGCTATTG 961
Query 1049 GAACGGATAGGGTTGTTTCAGTTGCAGCTAAACTGGAGAAACTGGATTTGGATTTGATAA 1108
||| |||||| || ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 962 GAAAGGATAGAGTAGTTTCAGTTGCAGCTAAACTGGAGAAACTGGATCTGGAACTGATAA 1021
Query 1109 GGAAAGAGCGAACAAGAGGAGATATCTCACTTGCTGATCAGATCCAAGCTGCTAAGAACC 1168
|||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1022 GGAAAGAGAGGACAAGAGGAGATATCTCACTTGCTGATCAGATTCAAGCTGCCAAGAACC 1081
Query 1169 AACGAGGAAGTGATGTTTTATCGAGATTTGGTCTTTTTGCCATGAAATCGATGGATTTTG 1228
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1082 AACGAGGAAATGATGTATTATCGAGATTTGGTCTTTTTGCCATGAAATCAATGGATTTTG 1141
Query 1229 ATTAACTCTTTTCTACTCCTAGTTTATAGCTTTCTCtttttttCTTGTGCCACTAAATA- 1287
|||||||||||| | | | || | |||| ||| ||||||||||||||||
Sbjct 1142 ATTAACTCTTTT--AG-C-T-GTCT----CTTTA-CTT-----CTTGTGCCACTAAATAC 1186
Query 1288 --AA-TAAACAAGGTTGACTTGAGGATATAATAAATAAA 1323
|| |||||||| |||||||||||||||||||||||||
Sbjct 1187 TGAAATAAACAAGATTGACTTGAGGATATAATAAATAAA 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5