BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53260.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923871 jgi|Araly1|923871|scaffold_105152.1 1591 0.0
> Ahg923871 jgi|Araly1|923871|scaffold_105152.1
Length=1275
Score = 1591 bits (861), Expect = 0.0
Identities = 1156/1290 (90%), Gaps = 53/1290 (4%)
Strand=Plus/Plus
Query 47 TCTCCATTTTTATCATCTTCCAATGGCGATTTCTCGTTCCATCCTTCACCGGCCAGCTAA 106
||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1 TCTCCATTTGTATCATCTTCCAATGGCGATTTCTCGTTCCATCCTTCGCCGGCCGGCGAA 60
Query 107 ATCCTTTTCCTCACTGTTCACTCGTTCCTTCTCTTCGTCATCTCCTCTCGCCAATTCCCC 166
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 ATCCTTTTCCTCACTGTTCACTCGTTCCTTCTCCTCTTCATCTCCTCTCGCCAATTCCCC 120
Query 167 TA-CTGTTTCTCGATCTGCGTCTTCGTTGTTGAATCGTTCACGTTCTCTCGTTTCTGGAT 225
| | ||||||||||| ||||| ||||| |||| ||||| |||||||||||| |||||
Sbjct 121 -AGCGGTTTCTCGATCCGCGTCCTCGTTACTGAACCGTTCTCGTTCTCTCGTTGCTGGAC 179
Query 226 TCTCAGCGTTGGTCCGTGCCGGTGTATC-TCTAGCTAGGTGTATGTCTACGCAGGTTACT 284
||||||||||||||||||| |||||||| || |||||||||||||||||||||| ||||
Sbjct 180 TCTCAGCGTTGGTCCGTGCTGGTGTATCTTC-GGCTAGGTGTATGTCTACGCAGGCTACT 238
Query 285 TCCG-CTTCGCTGAATGATCCGAGCCCTAACTGGTCGAATCGGCCACCAAAGGATACGAT 343
| || |||| ||||||||||||| |||||| ||||||||| |||||||||||| |||||
Sbjct 239 T-CGTCTTCACTGAATGATCCGAACCCTAATTGGTCGAATAAGCCACCAAAGGAGACGAT 297
Query 344 TTTGCTTGATGGTTGTGATTTCGAGCATTGGTTTGTTGTCAT---G------G-A--A-A 390
|||||| |||||||||||||| ||||||||| |||||||||| | | | | |
Sbjct 298 TTTGCTCGATGGTTGTGATTTTGAGCATTGGCTTGTTGTCATGGAGAAACCTGAAGGAGA 357
Query 391 TCTCTCTAGAGACGAGATTATTGATTACTACATCAAAACCCTAGCTCAAGTTGTTGGCAG 450
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTCACTAGAGACGAGATTATTGATTACTACATCAAAACCCTAGCTCAAGTTGTTGGCAG 417
Query 451 TGAAGAGGAGGCAAGGATGAAGATTTACTCTGTGTCGCACAAATGCTACTTTGCTTTTGG 510
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 418 TGAAGAGGAGGCAAGAATGAAGATTTACTCTGTGTCACACAAATGCTACTTTGCTTTTGG 477
Query 511 AGCTCTTGTTTCAGAAGATCTTTCACATAAGATCAAAGAGTTGCCTAAGGTTAAG-TGGG 569
||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||||
Sbjct 478 AGCTCTTGTTTCAGAAGATCTTTCATATAAGATCAAAGAGTTGCCTAAGG-TGAGATGGG 536
Query 570 TTCTTCCTGATTCCTACTTGGATGGGAAGAA-TAAAGACTATGGAGGAGAACCTTTCATT 628
|||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||
Sbjct 537 TTCTTCCTGATTCCTACTTGGATGTGAA-AAGCAAAAACTATGGAGGAGAACCTTTCATT 595
Query 629 GATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAATGGATAAGAAACAATGCT 688
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 596 GATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAGTGGATAAAAAACAATGAT 655
Query 689 A--ATGCAACTAATG-A-AAACA-G--ACGC-CCTCG-CAGG--CCTCGCAAC--TCGGA 735
| | |||||| | | | || | ||| ||| | | || || | || | |||
Sbjct 656 AGCA-GCAACTCACGCACTCGCAGGCCTCGCACCTTGTCTGGAACC-AGGGACTTTGGGA 713
Query 736 TGGAG--GCAG-GAACGATAGGGGAAACCAAGACACGGGTTACAGACGTCCACCACCAAA 792
|||| | || ||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 714 -GGAGAAG-AGAGAACGTTAGGGGAAACCAAGACACGGGTTACAGAGGTCCACCACCAAA 771
Query 793 CCAAGGTATGGGAGGTGCTCCACCTCCACCGCCTCACATAGGCAACAACCCAAACATGCC 852
||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 772 CCAGGGTATGGGAGGTGTTCCACCTCCACCACCTCACATAGGCAACAACCCAAACATGCC 831
Query 853 TCCTCATATACAACCACCTAACATGAACCAGAACTACAGAGGTCCTCCTCCACCACCAAA 912
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 832 CCCTCATATGCCACCACCTAACATGAACCAGAACTACAGAGG---TCCTCCACCACCAAA 888
Query 913 CATGAACCAGAACTATCAGGGACCACCAGCACCAAACATGAACCAGAACTATCAGGGACC 972
|||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 889 CATGGGTCAGAACTATCAGGGACCACCACCACCGAACATGAACCAGAACTACCAGGGACC 948
Query 973 TCCACCATCAAACATGGGTCAGAACTACCAGGGACCACCACCGCCAAACATGAA-C--CA 1029
||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| | ||
Sbjct 949 TCCACCACCAAACATGGGTCAGAATTACCAGGGACCACCACCACCAAACATGAATCAGCA 1008
Query 1030 GAGCTATCAGGGACCTCCACCGCCAAACATGAACCAGAGCTATCAGGGACCTCCACCGTC 1089
|| ||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1009 GAACTACCAGGAACCTCCACCACCAAACATGAACCAGAGTTATCAGGGACCTCCACCGTC 1068
Query 1090 GAACATGGGCCAGAACTACAGGGGACCTTCACTGCCGCCACCAAACATGAGTCAGAATTA 1149
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 GAACACGGGCCAGAACTACAGGGGACCTTCACCACCGCCACCAAACATGAGTCAGAATTA 1128
Query 1150 CGAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGG 1209
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CCAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGG 1188
Query 1210 TGGATACCAACAACAAGGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAG 1269
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AGGTTACCAACAA---GGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAG 1245
Query 1270 GAACCAG-AGTTAAACCGTCTTGTGTTTTC 1298
| ||||| |||| |||||||||| ||||||
Sbjct 1246 GGACCAGTAGTTGAACCGTCTTGGGTTTTC 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5