BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53270.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474453 jgi|Araly1|474453|fgenesh2_kg.1__4407__AT1G53270.1 2843 0.0
> Ahg474453 jgi|Araly1|474453|fgenesh2_kg.1__4407__AT1G53270.1
Length=1773
Score = 2843 bits (1539), Expect = 0.0
Identities = 1700/1778 (96%), Gaps = 10/1778 (1%)
Strand=Plus/Plus
Query 1 ATGGAATTGCCGGTAAAAGCTCCTATTCCCGGTGGCCGGGAAA-TCTCATATAGATTAGA 59
|||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 ATGGAATTACCGGTGAAAGCTCCTATTCCCGGTGGCC-GGAAATTCTCATATAGATTAGA 59
Query 60 AACCAAGAATCTGTCGTATAGAATAGGCGGAAACACTCCAAAGTTTTCTAATTTATGTGG 119
||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 60 AACCAAGAATCTGTCATATAGATTAGGCGGAAACGCTCCAAAATTTTCTAATTTATGTGG 119
Query 120 TTTGTTGAGTGAGAAGGAGGAAAAGGTTATCTTAAAGGATGTTTCTTGTGATGCAAGATC 179
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GTTGTTGAGTGAGAAGGAAGAAAAGGTTATCTTAAAAGATGTTTCTTGTGATGCAAGATC 179
Query 180 CGCGGAGATCACTGCGATCGCGGGTCCAAGCGGAGCAGGGAAAACCACGTTGCTGGAGAT 239
|||||||||||| ||||| |||||||| || || |||||||||||||| |||||||||||
Sbjct 180 CGCGGAGATCACGGCGATTGCGGGTCCGAGTGGGGCAGGGAAAACCACTTTGCTGGAGAT 239
Query 240 TCTAGCCGGAAAAGTTTCTCATGGGAAAGTTTCAGGGCAAGTGCTTGTCAACGGTAGGCC 299
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TCTCGCCGGAAAAGTTTCTCATGGGAAAGTTTCAGGGCAAGTGCTTGTCAATGGTAGGCC 299
Query 300 TATGGATGGTCCTGAGTACAGGAGGGTTTCAGGGTTTGTGCCACAAGAAGATGCTCTGTT 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TATGGATGGTCCTGAGTACAGGAGGGTTTCAGGGTTTGTGCCACAAGAGGATGCTCTGTT 359
Query 360 TCCGTTTCTTACGGTGCAAGAAACACTGACGTACAGCGCACT-CTTGAGGCTGAAGACAA 418
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 360 TCCGTTTCTTACGGTGCAAGAAACACTGACGTACAGCGCACTCCTT-AGGCTGAAGACGA 418
Query 419 AGAGGAAAGACGCGGCTGCA--AAGGTGAAGAGGCTGATTCAAGAGCTTGGTCTAGAACA 476
|||||||||| |||| | || |||||||||||||||||||||||||| |||||||||||
Sbjct 419 AGAGGAAAGATGCGG-T-CACGAAGGTGAAGAGGCTGATTCAAGAGCTCGGTCTAGAACA 476
Query 477 TGTTGCGGATTCAAGGATCGGTCAAGGATCAAGATCTGGAATCTCTGGAGGAGAGAGAAG 536
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 TGTTGTGGATTCAAGGATCGGTCAAGGATCAAGATCTGGAATCTCTGGAGGAGAAAGAAG 536
Query 537 AAGGGTTTCTATTGGAGTTGAACTTGTTCATGATCCAAATGTTATATTGATCGATGAGCC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGGGTTTCTATTGGAGTTGAACTTGTTCATGATCCAAATGTTATATTGATCGATGAGCC 596
Query 597 AACCTCTGGTTTGGATTCTGCGTCCGCTCTTCAAGTTGTGACGCTTCTCAAAGATATGAC 656
|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 597 AACCTCTGGTTTGGATTCAGCATCCGCTCTTCAAGTTGTGATGCTTCTCAAAGATATGAC 656
Query 657 GATTAAACAAGGTAAAACCATTGTTCTGACGATTCACCAGCCTGGTTTTCGCATACTCGA 716
| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 657 GGTTAAACAAAGTAAAACCATTGTTCTGACGATTCACCAGCCTGGGTTTCGCATACTCGA 716
Query 717 GCAGATAGACCGGATAGTGTTGCTCTCTAACGGGATGGTTGTTCAAAACGGATCAGTTTA 776
|| ||||||||||||||||||||||||||| ||| |||||||||||||||| || ||| |
Sbjct 717 GCTGATAGACCGGATAGTGTTGCTCTCTAATGGGCTGGTTGTTCAAAACGGGTCGGTTAA 776
Query 777 TAGCCTTCATCAGAAGATTAAGTTCTCCGGTCACCAGATTCCTAGGCGGGTAAATGTCTT 836
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 777 TAGCCTTCATCAGAAGATTAAGTTTTCCGGTCACCAGATTCCTCGGCGGGTAAATGTCTT 836
Query 837 GGAGTATGCAATTGATATTGCAGGGAGTCTTGAACCGATCAGAACCCAGAGTTGCAGAGA 896
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 GGAGTATGCAATTGATATTGCAGGGAGTCTTGAACCGATAAGAACCCAGAGTTGCAGAGA 896
Query 897 AATCTCATGTTATGGTCATAGCAAAACATGGAAGAGTTGCTATATTAGTGCAGGAGGAGA 956
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 897 AATCTCATGTTATGGTCATAGCAAAACATGGAAGAGTTGCTATATTAATGCAGGAGGAGA 956
Query 957 GCTTCATCAATCTGATTCTCACAGCAACTCAGTGTTAGAGGAAGTGCAGATACTCGGGCA 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 957 GCTTCATCAATCTGATTCTCACAGCAACTCAGTGTTAGAGGAAGTGCAGATACTTGGGCA 1016
Query 1017 AAGATCTTGCAAGAACATCTTCAGAACCAAGCAATTGTTCACAACCAGAGCCTTACAAGC 1076
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1017 AAGATCTTGTAAGAACATCTTCAGAACCAAGCAATTGTTCGCAACCAGAGCTTTACAAGC 1076
Query 1077 TTCCATTGCCGGTCTTATACTGGGGTCGATTTACTTGAACGTAGGAAATCAAAAGAAAGA 1136
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1077 TTCCATTGCCGGTCTTATACTCGGGTCAATTTACTTGAACGTAGGAAATCAAAAGAAAGA 1136
Query 1137 AGCGAAAGTCTTGCGAACCGGGTTCTTCGCCTTTATCCTCACTTTCCTGCTATCTTCCAC 1196
|||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||
Sbjct 1137 AGCGAAAGTCTTGCGAACTGGGTTCTTCGCCTTTACCCTCACTTTCCTACTATCTTCCAC 1196
Query 1197 AACAGAGGGACTTCCAATTTTCTTGCAAGACAGGAGAATCCTAATGAGAGAGACATCGAG 1256
|||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1197 AACAGAGGGACTTCCAATATTCTTGCAAGACCGGAGAATTCTAATGAGAGAGACATCGAG 1256
Query 1257 AAGGGCTTACAGAGTTTTGTCTTACGTTTTAGCAGATACTCTCATATTCATTCCCTTCTT 1316
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1257 AAGGGCTTACAGAGTTTTGTCTTACGTTTTAGCAGATACCCTCATCTTCATTCCCTTCCT 1316
Query 1317 GTTGATCATAAGCATGCTCTTTGCTACGCCGGTTTATTGGCTGGTCGGTCTCAGAAGAGA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATTGATCATAAGCATGCTCTTTGCTACGCCGGTTTATTGGCTGGTCGGTCTCAGAAGAGA 1376
Query 1377 GCTAGACGGCTTCCTCTACTTCTCATTGGTGATATGGATTGTTCTTCTGATGTCAAACTC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GCTAGACGGCTTCCTCTACTTCTCATTGGTGATATGGATTGTTCTTCTGATGTCAAACTC 1436
Query 1437 TTTTGTCGCATGTTTCAGTGCTCTTGTCCCAAACTTCATAATGGGGACATCAGTAATCTC 1496
||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1437 CTTTGTTGCATGTTTCAGTGCTCTTGTTCCAAACTTCATAATGGGGACATCAGTGATCTC 1496
Query 1497 AGGTCTCATGGGATC-TTTCTTCCTCTTCTCCGGGTATTTCATTGCAAAGGACAGGATCC 1555
|||||| |||||||| ||| ||||||||||| || |||||||| |||||||| |||||||
Sbjct 1497 AGGTCTTATGGGATCCTTT-TTCCTCTTCTCTGGATATTTCATCGCAAAGGAGAGGATCC 1555
Query 1556 CCGTTTACTGGGAGTTCATGCATTATCTCAGCCTCTTCAAGTATCCATTCGAATGCCTGA 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1556 CCGTTTACTGGGAGTTCATGCATTATCTCAGCCTCTTCAAGTATCCATTCGAATGCCTTA 1615
Query 1616 TGATCAACGAGTATCGAGGAGACGTGTTCTTAAAACAACAAGACCTCAAAGAGTCTCAGA 1675
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1616 TGATCAACGAGTATCGAGGAGACGTGTTCTTAAAGCAACAAGACCTTAAGGAGTCTCAGA 1675
Query 1676 AATGGAGCAATCTTGGTATCATGGCAAGTTTCATCGTCGGGTACAGAGTCCTTGGATTCT 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AATGGAGCAATCTTGGTATCATGGCAAGTTTCATCGTCGGGTACAGAGTCCTTGGATTCT 1735
Query 1736 TCATCTTATGGTACAGATGTTACAGAACAAGAAGCTAG 1773
||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCATCTTATGGTACAGATGTTACAGAACAAGAAGCTAG 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5