BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53280.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923873 jgi|Araly1|923873|scaffold_105154.1 2224 0.0
Ahg478924 jgi|Araly1|478924|fgenesh2_kg.3__1625__AT3G14990.1 1068 0.0
> Ahg923873 jgi|Araly1|923873|scaffold_105154.1
Length=1354
Score = 2224 bits (1204), Expect = 0.0
Identities = 1307/1356 (96%), Gaps = 9/1356 (1%)
Strand=Plus/Plus
Query 33 aaaaaaaaaaaCGTCAAT-G-G-CGTCGTCGTCGTTGTGTCATCGCTATTTTAACAAAAT 89
|||||||||||||||||| | | |||||||||||||||||||| ||||||||||| |||
Sbjct 5 AAAAAAAAAAACGTCAATGGCGTCGTCGTCGTCGTTGTGTCATTGCTATTTTAACCCAAT 64
Query 90 CACTGTCACTCCCTTTTTTAACACTAAAAAACTCCATCACTATTCTCCGAGACGAATCTC 149
||||||||||||||| ||||||| |||| | |||||| |||| | ||||||||||
Sbjct 65 CACTGTCACTCCCTTCCCTAACACT---AAACGCAATCACTCTTCT-C--GACGAATCTC 118
Query 150 TCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTACTAAGAA 209
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 TCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTGCTAAGAA 178
Query 210 GGTTTTGATTCCTGTTGCTCATGGTACGGAGCCGTTTGAAGCGGTGGTTATGATCGATGT 269
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 GGTTTTGATTCCCGTTGCGCATGGTACGGAGCCGTTTGAAGCGGTGGTGATGATCGATGT 238
Query 270 GCTACGGCGAGGCGGAGCGGATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGA 329
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 GCTACGGCGAGGCGGAGCGGATGTTACGGTGGCGTCCGTTGAGAATCAGGTCGGCGTTGA 298
Query 330 TGCTTGCCATGGAATCAAAATGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGT 389
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 299 TGCTTGCCATGGAATCAAGATGGTCGCTGATACTCTTCTCTCTGAGATCACCGACTCCGT 358
Query 390 TTTCGACCTTATTATGCTCCCTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAA 449
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 359 TTTCGACCTTATTATGCTCCCTGGAGGACTTCCGGGCGGTGAGACTCTTAAGAATTGTAA 418
Query 450 ACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTG 478
Query 510 TTGTGCGCCGGCGTTGGCGTTTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATG 569
||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 479 TTGTGCGCCTGCGTTGGCGCTTGGTACTTGGGGTCTACTAGAGGGTAAAAAAGCTACATG 538
Query 570 TTACCCGGTTTTTATGGAGAAACTAGCGGCTTGTGCGACAGCTGTTGAGTCAAGAGTGGA 629
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 539 TTACCCGGTTTTTATGGAGAAACTAGCTGCTTGCGCGACAGCTGTTGAGTCAAGAGTGGA 598
Query 630 AATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCAC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCAC 658
Query 690 GCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGAT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGAT 718
Query 750 GCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAGCTGGTCATT 809
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 GCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAACTGGTCATT 778
Query 810 CGAGGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCGGAGGAAATGGAAGCTGT 869
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 CGACGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCAGAGGAAATGGAAGCTGT 838
Query 870 TGCTATCATTGATGTCCTGAAGCGGGCAAAAGCAAATGTTGTCGTAGCTGCGCTTGGTAA 929
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TGCTATCATTGATGTCCTGAGGCGGGCAAAAGCAAATGTTGTCGTTGCTGCGCTTGGTAA 898
Query 930 CAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGACGA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 CAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGATGA 958
Query 990 GGCTGAAAAGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTGAAGC 1049
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 959 GGCTGAAAAGAATTTGTACGATCTGATTGTGTTGCCTGGTGGTCTAGGTGGTGCTGAAGC 1018
Query 1050 ATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACC 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACC 1078
Query 1110 ATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGG 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGG 1138
Query 1170 TAAGAAGGCAACAGCGTTTCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGA 1229
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TAAGAAGGCAACAGCGTTCCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGA 1198
Query 1230 GCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCTCATTGGA 1289
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1199 GCATCGAGTCTTGGTGGACGGCAATCTCATAACAAGCAGGGGTCCAGGAACCTCATTGGA 1258
Query 1290 GTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAAA 1349
|||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1259 GTTTGCGCTCGCAATTGTAGAGAAGTTTTACGGGCGTGAGAAAGGACTTCAGCTCGCAAA 1318
Query 1350 GGCAACACTTGTGTAAACTCATGAGTATCTTAGGTA 1385
||||||||||||||||| ||||||||||||||||||
Sbjct 1319 GGCAACACTTGTGTAAAATCATGAGTATCTTAGGTA 1354
> Ahg478924 jgi|Araly1|478924|fgenesh2_kg.3__1625__AT3G14990.1
Length=1500
Score = 1068 bits (578), Expect = 0.0
Identities = 1010/1215 (83%), Gaps = 44/1215 (4%)
Strand=Plus/Plus
Query 173 TCTCT-ATCTCTGCAACTATGTCTTCATCTACTAAGAAGGTTTTGATTCCTGTTGCTCAT 231
||||| ||||| ||||||||| || ||||||| |||| ||||||||| ||| |||| ||
Sbjct 79 TCTCTAATCTCCGCAACTATGGCTACATCTACGAAGACGGTTTTGATCCCTATTGCACAC 138
Query 232 GGTACGGAGCCGTTT-GAAGCGGTGGTTATGATCGA-TGTGCTACGGCGAGGCGGAGCGG 289
||||||||||| ||| |||||||||| |||||| | ||| | || ||||| || || |
Sbjct 139 GGTACGGAGCC-TTTAGAAGCGGTGGCGATGATC-ACCGTGTTGCGTCGAGGTGGTGCTG 196
Query 290 ATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGATGCTTGCCATGGAATCAAAA 349
| || |||||||||||||| |||| |||||| |||||||||||||| ||||| ||||| |
Sbjct 197 ACGTGACGGTGGCTTCCGTCGAGACTCAGGTTGGCGTTGATGCTTGTCATGGCATCAAGA 256
Query 350 TGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGTTTTCGACCTTATTATGCTCC 409
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 257 TGGTCGCTGATACTCTTCTCTCTGATATTACCGACTCTGTTTTCGACCTTATTGTGCTCC 316
Query 410 CTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAAACCTTTAGAGAAGATGGTGA 469
| ||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |
Sbjct 317 CCGGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAACCTTTAGAGAACATGGTTA 376
Query 470 AGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTGTTGTGCGCCGGCGTTGGCGT 529
|||| |||||| ||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 377 AGAAACAAGACTCTGATGGACGACTTAACGCAGCTATCTGTTGTGCTCCTGCGTTGGC-T 435
Query 530 -TTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATGTTACCCGGTTTTTATGGAG 588
||||||||||||| |||||||| || |||||||| || ||||||| ||||||||||||
Sbjct 436 CTTGGTACTTGGGGTCTACTAGAAGGCAAAAAAGCAACGGGTTACCCTGTTTTTATGGAG 495
Query 589 AAACTAGCGGCT--T-GTGCGACAGCTGTTGAGTCAAGAGTGGAAATTGATGGGAAGA-T 644
||||| || ||| | |||| || |||||||||||||||||| |||| ||||| |||| |
Sbjct 496 AAACTTGCAGCTACTTGTGCCACTGCTGTTGAGTCAAGAGTGCAAATAGATGG-AAGAAT 554
Query 645 AGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCACGCTTGTGGAGCAACT 704
|||||| ||| | || || ||||| ||||| |||||||| ||||||||| | ||||| |
Sbjct 555 AGTGACTAGTCGTGGACCAGGAACCACCATTGAATTCTCCGTCACGCTTATAGAGCAG-T 613
Query 705 TCTT-GGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGATGCGTCCCAACCCTG 763
| || |||||||||||||||| |||||||||| | |||| || | |||||||||||||
Sbjct 614 TGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAGTATCTTGCTGCTTCGTCCCAACCCTG 673
Query 764 GTGATGAGTATACTATTACTGAGCTTAACCAAGTC-AGCTGGTCATTCGAGGGTACCCCA 822
|||| |||| |||| ||||||||||||||||| | | |||||||||||| | ||| |||
Sbjct 674 GTGAGGAGTTTACTTTTACTGAGCTTAACCAAA-CGACCTGGTCATTCGAAGATACACCA 732
Query 823 CAGATTCTTGTACCCATTGCAGATG-GCTCGGAGGAAATGGAAGCTGTTGCTATCATTGA 881
|||||||| |||||||||||||| | | || |||||||| ||||| |||| | | ||
Sbjct 733 CAGATTCTCGTACCCATTGCAGAGGAG-TCAGAGGAAATTGAAGCCATTGCGCTTGTAGA 791
Query 882 TGTCCTGA-AGCGGGCAAAAGCAAATGTTGTCG-TAGCTGC-GCTTGGTAACAGTTTGGA 938
| |||||| | |||||||||||||| || || | | ||||| | ||||||||||||||||
Sbjct 792 TATCCTGAGA-CGGGCAAAAGCAAACGTAGT-GATTGCTGCAG-TTGGTAACAGTTTGGA 848
Query 939 AGTGGTAGCATCTCGGAAAG-TCAAGCTGGTGGCAGATGTGCTTCTCGACGAGGCTGAAA 997
||| |||| |||||| |||| | ||||| || ||||| |||||||| || || | || |
Sbjct 849 AGTTGTAGGATCTCGCAAAGCT-AAGCTAGTAGCAGAAGTGCTTCTTGATGAAGTTGCAG 907
Query 998 AGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTG-AAGCATTTGCA 1056
|||| |||| ||||||||||||||| ||||| ||||| ||||||| ||| ||| |||
Sbjct 908 AGAAGTCGTTCGATCTGATTGTGTTACCTGGCGGTCTTAACGGTGCTCCAAG-ATTCGCA 966
Query 1057 AGTT-CGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACCATATGG 1115
|| | || |||| || ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 967 AGCTGCG-AGAAACTGGTGAATATGTTAAAGAAGCAGGCAGAAGCAAACAAACCATATGG 1025
Query 1116 AGCAATTTGTGCCTCTCCTGC-T-CTGGTGTTTGAGCC-ACATGGTTTACTCAAGGGTAA 1172
|| ||| || || || ||||| | | | | || ||||| | |||||||||||||||||||
Sbjct 1026 AGGAATCTGCGCATCGCCTGCGTAC-G-TCTTCGAGCCTA-ATGGTTTACTCAAGGGTAA 1082
Query 1173 GAAGGCAAC-AGCGTTTCC-AGCAATGTGC-AGCAAACTGACGGACCAGAGTCACATCGA 1229
|||||| || | | | || || || || | |||||| ||||| |||||||||| ||
Sbjct 1083 GAAGGCTACTA-C-TCACCCAGTGGTGAGCGA-CAAACTTTCGGACAAGAGTCACATTGA 1139
Query 1230 GCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCT-CATTGG 1288
|||| ||||| |||| || || ||| ||||||| ||||| | |||||| || | || |||
Sbjct 1140 GCATAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGAC-TGCAATGG 1198
Query 1289 AGTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAA 1348
||||| ||||||| ||||| || |||||||||||||| ||||||| |||||||||| |||
Sbjct 1199 AGTTTTCACTTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACTTCAGCTCGCAA 1258
Query 1349 AGGCAACACTTGTGT 1363
|||| ||||||||||
Sbjct 1259 AGGCCACACTTGTGT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5