BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53280.1 Length=1537 Score E Sequences producing significant alignments: (Bits) Value Ahg923873 jgi|Araly1|923873|scaffold_105154.1 2224 0.0 Ahg478924 jgi|Araly1|478924|fgenesh2_kg.3__1625__AT3G14990.1 1068 0.0 > Ahg923873 jgi|Araly1|923873|scaffold_105154.1 Length=1354 Score = 2224 bits (1204), Expect = 0.0 Identities = 1307/1356 (96%), Gaps = 9/1356 (1%) Strand=Plus/Plus Query 33 aaaaaaaaaaaCGTCAAT-G-G-CGTCGTCGTCGTTGTGTCATCGCTATTTTAACAAAAT 89 |||||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||| Sbjct 5 AAAAAAAAAAACGTCAATGGCGTCGTCGTCGTCGTTGTGTCATTGCTATTTTAACCCAAT 64 Query 90 CACTGTCACTCCCTTTTTTAACACTAAAAAACTCCATCACTATTCTCCGAGACGAATCTC 149 ||||||||||||||| ||||||| |||| | |||||| |||| | |||||||||| Sbjct 65 CACTGTCACTCCCTTCCCTAACACT---AAACGCAATCACTCTTCT-C--GACGAATCTC 118 Query 150 TCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTACTAAGAA 209 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 119 TCTTCGTGTAAATCGACGATCCTTCTCTATCTCTGCAACTATGTCTTCATCTGCTAAGAA 178 Query 210 GGTTTTGATTCCTGTTGCTCATGGTACGGAGCCGTTTGAAGCGGTGGTTATGATCGATGT 269 |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 179 GGTTTTGATTCCCGTTGCGCATGGTACGGAGCCGTTTGAAGCGGTGGTGATGATCGATGT 238 Query 270 GCTACGGCGAGGCGGAGCGGATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGA 329 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 239 GCTACGGCGAGGCGGAGCGGATGTTACGGTGGCGTCCGTTGAGAATCAGGTCGGCGTTGA 298 Query 330 TGCTTGCCATGGAATCAAAATGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGT 389 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || Sbjct 299 TGCTTGCCATGGAATCAAGATGGTCGCTGATACTCTTCTCTCTGAGATCACCGACTCCGT 358 Query 390 TTTCGACCTTATTATGCTCCCTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAA 449 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 359 TTTCGACCTTATTATGCTCCCTGGAGGACTTCCGGGCGGTGAGACTCTTAAGAATTGTAA 418 Query 450 ACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTG 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ACCTTTAGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTG 478 Query 510 TTGTGCGCCGGCGTTGGCGTTTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATG 569 ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 479 TTGTGCGCCTGCGTTGGCGCTTGGTACTTGGGGTCTACTAGAGGGTAAAAAAGCTACATG 538 Query 570 TTACCCGGTTTTTATGGAGAAACTAGCGGCTTGTGCGACAGCTGTTGAGTCAAGAGTGGA 629 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 539 TTACCCGGTTTTTATGGAGAAACTAGCTGCTTGCGCGACAGCTGTTGAGTCAAGAGTGGA 598 Query 630 AATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCAC 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AATTGATGGGAAGATAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCAC 658 Query 690 GCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGAT 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GCTTGTGGAGCAACTTCTTGGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGAT 718 Query 750 GCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAGCTGGTCATT 809 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 719 GCGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAACTGGTCATT 778 Query 810 CGAGGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCGGAGGAAATGGAAGCTGT 869 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 779 CGACGGTACCCCACAGATTCTTGTACCCATTGCAGATGGCTCAGAGGAAATGGAAGCTGT 838 Query 870 TGCTATCATTGATGTCCTGAAGCGGGCAAAAGCAAATGTTGTCGTAGCTGCGCTTGGTAA 929 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 839 TGCTATCATTGATGTCCTGAGGCGGGCAAAAGCAAATGTTGTCGTTGCTGCGCTTGGTAA 898 Query 930 CAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGACGA 989 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 899 CAGTTTGGAAGTGGTAGCATCTCGGAAAGTCAAGCTGGTGGCAGATGTGCTTCTCGATGA 958 Query 990 GGCTGAAAAGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTGAAGC 1049 |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| Sbjct 959 GGCTGAAAAGAATTTGTACGATCTGATTGTGTTGCCTGGTGGTCTAGGTGGTGCTGAAGC 1018 Query 1050 ATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACC 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 ATTTGCAAGTTCGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACC 1078 Query 1110 ATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGG 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 ATATGGAGCAATTTGTGCCTCTCCTGCTCTGGTGTTTGAGCCACATGGTTTACTCAAGGG 1138 Query 1170 TAAGAAGGCAACAGCGTTTCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGA 1229 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TAAGAAGGCAACAGCGTTCCCAGCAATGTGCAGCAAACTGACGGACCAGAGTCACATCGA 1198 Query 1230 GCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCTCATTGGA 1289 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1199 GCATCGAGTCTTGGTGGACGGCAATCTCATAACAAGCAGGGGTCCAGGAACCTCATTGGA 1258 Query 1290 GTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAAA 1349 |||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1259 GTTTGCGCTCGCAATTGTAGAGAAGTTTTACGGGCGTGAGAAAGGACTTCAGCTCGCAAA 1318 Query 1350 GGCAACACTTGTGTAAACTCATGAGTATCTTAGGTA 1385 ||||||||||||||||| |||||||||||||||||| Sbjct 1319 GGCAACACTTGTGTAAAATCATGAGTATCTTAGGTA 1354 > Ahg478924 jgi|Araly1|478924|fgenesh2_kg.3__1625__AT3G14990.1 Length=1500 Score = 1068 bits (578), Expect = 0.0 Identities = 1010/1215 (83%), Gaps = 44/1215 (4%) Strand=Plus/Plus Query 173 TCTCT-ATCTCTGCAACTATGTCTTCATCTACTAAGAAGGTTTTGATTCCTGTTGCTCAT 231 ||||| ||||| ||||||||| || ||||||| |||| ||||||||| ||| |||| || Sbjct 79 TCTCTAATCTCCGCAACTATGGCTACATCTACGAAGACGGTTTTGATCCCTATTGCACAC 138 Query 232 GGTACGGAGCCGTTT-GAAGCGGTGGTTATGATCGA-TGTGCTACGGCGAGGCGGAGCGG 289 ||||||||||| ||| |||||||||| |||||| | ||| | || ||||| || || | Sbjct 139 GGTACGGAGCC-TTTAGAAGCGGTGGCGATGATC-ACCGTGTTGCGTCGAGGTGGTGCTG 196 Query 290 ATGTTACGGTGGCTTCCGTTGAGAATCAGGTCGGCGTTGATGCTTGCCATGGAATCAAAA 349 | || |||||||||||||| |||| |||||| |||||||||||||| ||||| ||||| | Sbjct 197 ACGTGACGGTGGCTTCCGTCGAGACTCAGGTTGGCGTTGATGCTTGTCATGGCATCAAGA 256 Query 350 TGGTCGCTGATACTCTTCTCTCTGATATCACCGACTCGGTTTTCGACCTTATTATGCTCC 409 |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| Sbjct 257 TGGTCGCTGATACTCTTCTCTCTGATATTACCGACTCTGTTTTCGACCTTATTGTGCTCC 316 Query 410 CTGGAGGACTTCCTGGTGGTGAGACTCTTAAGAATTGTAAACCTTTAGAGAAGATGGTGA 469 | ||||| ||||| ||||| ||||||||||| || ||||||||||||||||| ||||| | Sbjct 317 CCGGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAACCTTTAGAGAACATGGTTA 376 Query 470 AGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTGTTGTGCGCCGGCGTTGGCGT 529 |||| |||||| ||||||||||||||||||| |||||||||||||| || |||||||| | Sbjct 377 AGAAACAAGACTCTGATGGACGACTTAACGCAGCTATCTGTTGTGCTCCTGCGTTGGC-T 435 Query 530 -TTGGTACTTGGGGACTACTAGAGGGTAAAAAAGCTACATGTTACCCGGTTTTTATGGAG 588 ||||||||||||| |||||||| || |||||||| || ||||||| |||||||||||| Sbjct 436 CTTGGTACTTGGGGTCTACTAGAAGGCAAAAAAGCAACGGGTTACCCTGTTTTTATGGAG 495 Query 589 AAACTAGCGGCT--T-GTGCGACAGCTGTTGAGTCAAGAGTGGAAATTGATGGGAAGA-T 644 ||||| || ||| | |||| || |||||||||||||||||| |||| ||||| |||| | Sbjct 496 AAACTTGCAGCTACTTGTGCCACTGCTGTTGAGTCAAGAGTGCAAATAGATGG-AAGAAT 554 Query 645 AGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCACGCTTGTGGAGCAACT 704 |||||| ||| | || || ||||| ||||| |||||||| ||||||||| | ||||| | Sbjct 555 AGTGACTAGTCGTGGACCAGGAACCACCATTGAATTCTCCGTCACGCTTATAGAGCAG-T 613 Query 705 TCTT-GGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGATGCGTCCCAACCCTG 763 | || |||||||||||||||| |||||||||| | |||| || | ||||||||||||| Sbjct 614 TGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAGTATCTTGCTGCTTCGTCCCAACCCTG 673 Query 764 GTGATGAGTATACTATTACTGAGCTTAACCAAGTC-AGCTGGTCATTCGAGGGTACCCCA 822 |||| |||| |||| ||||||||||||||||| | | |||||||||||| | ||| ||| Sbjct 674 GTGAGGAGTTTACTTTTACTGAGCTTAACCAAA-CGACCTGGTCATTCGAAGATACACCA 732 Query 823 CAGATTCTTGTACCCATTGCAGATG-GCTCGGAGGAAATGGAAGCTGTTGCTATCATTGA 881 |||||||| |||||||||||||| | | || |||||||| ||||| |||| | | || Sbjct 733 CAGATTCTCGTACCCATTGCAGAGGAG-TCAGAGGAAATTGAAGCCATTGCGCTTGTAGA 791 Query 882 TGTCCTGA-AGCGGGCAAAAGCAAATGTTGTCG-TAGCTGC-GCTTGGTAACAGTTTGGA 938 | |||||| | |||||||||||||| || || | | ||||| | |||||||||||||||| Sbjct 792 TATCCTGAGA-CGGGCAAAAGCAAACGTAGT-GATTGCTGCAG-TTGGTAACAGTTTGGA 848 Query 939 AGTGGTAGCATCTCGGAAAG-TCAAGCTGGTGGCAGATGTGCTTCTCGACGAGGCTGAAA 997 ||| |||| |||||| |||| | ||||| || ||||| |||||||| || || | || | Sbjct 849 AGTTGTAGGATCTCGCAAAGCT-AAGCTAGTAGCAGAAGTGCTTCTTGATGAAGTTGCAG 907 Query 998 AGAATTCGTACGATCTGATTGTGTTGCCTGGTGGTCTCGGCGGTGCTG-AAGCATTTGCA 1056 |||| |||| ||||||||||||||| ||||| ||||| ||||||| ||| ||| ||| Sbjct 908 AGAAGTCGTTCGATCTGATTGTGTTACCTGGCGGTCTTAACGGTGCTCCAAG-ATTCGCA 966 Query 1057 AGTT-CGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAAACAAACCATATGG 1115 || | || |||| || ||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 967 AGCTGCG-AGAAACTGGTGAATATGTTAAAGAAGCAGGCAGAAGCAAACAAACCATATGG 1025 Query 1116 AGCAATTTGTGCCTCTCCTGC-T-CTGGTGTTTGAGCC-ACATGGTTTACTCAAGGGTAA 1172 || ||| || || || ||||| | | | | || ||||| | ||||||||||||||||||| Sbjct 1026 AGGAATCTGCGCATCGCCTGCGTAC-G-TCTTCGAGCCTA-ATGGTTTACTCAAGGGTAA 1082 Query 1173 GAAGGCAAC-AGCGTTTCC-AGCAATGTGC-AGCAAACTGACGGACCAGAGTCACATCGA 1229 |||||| || | | | || || || || | |||||| ||||| |||||||||| || Sbjct 1083 GAAGGCTACTA-C-TCACCCAGTGGTGAGCGA-CAAACTTTCGGACAAGAGTCACATTGA 1139 Query 1230 GCATCGAGTCTTGGTGGACGGCAATCTCATAACGAGCAGGGGTCCAGGAACCT-CATTGG 1288 |||| ||||| |||| || || ||| ||||||| ||||| | |||||| || | || ||| Sbjct 1140 GCATAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGAC-TGCAATGG 1198 Query 1289 AGTTTGCACTTGCAATTGTAGAGAAGTTTTACGGGCGCGAGAAAGGACTTCAGCTCTCAA 1348 ||||| ||||||| ||||| || |||||||||||||| ||||||| |||||||||| ||| Sbjct 1199 AGTTTTCACTTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACTTCAGCTCGCAA 1258 Query 1349 AGGCAACACTTGTGT 1363 |||| |||||||||| Sbjct 1259 AGGCCACACTTGTGT 1273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57554360195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5