BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53282.1
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314652 jgi|Araly1|314652|fgenesh1_pm.C_scaffold_1003432 289 1e-77
> Ahg314652 jgi|Araly1|314652|fgenesh1_pm.C_scaffold_1003432
Length=249
Score = 289 bits (156), Expect = 1e-77
Identities = 222/252 (88%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 1 ATGAGTCTTAAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTATGGTTGCTATG 60
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGAGTATTAAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTTTGGTGGCTATG 60
Query 61 GTAGAAGAAGTAGAAGGGCTTTCA------TATGCTACATGCATGGACCTTTGCGA-GAC 113
||||||||||||||||||| |||| |||| || |||||||||||||||| | |||
Sbjct 61 GTAGAAGAAGTAGAAGGGCGTTCAACCCCATATGGTAGATGCATGGACCTTTGC-ATGAC 119
Query 114 CAAGTGTAACtttttttttACACATCCAGAAAAATACTGTAAAGATAAATGTGACCGCAA 173
|||||| ||| |||||||||||||||| ||||||||||||| |||||||||| | |||||
Sbjct 120 CAAGTGCAACCTTTTTTTTACACATCCGGAAAAATACTGTAGAGATAAATGTAATCGCAA 179
Query 174 ATGTCGTAGACTTCAGTC-AGCTCAATCATCCCAGATGGAGA-CTATAGAAATGAGAAAC 231
||||| |||||| | || | ||||||||||||||||||| | | |||| ||||||||||
Sbjct 180 ATGTCACAGACTTTA-TCCATCTCAATCATCCCAGATGGA-ATCAATAGGAATGAGAAAC 237
Query 232 ATAAATGGGTAG 243
||||||||||||
Sbjct 238 ATAAATGGGTAG 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11179587577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5