BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53290.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474455 jgi|Araly1|474455|fgenesh2_kg.1__4409__AT1G53290.1 1820 0.0
Ahg929279 jgi|Araly1|929279|scaffold_301736.1 1011 0.0
> Ahg474455 jgi|Araly1|474455|fgenesh2_kg.1__4409__AT1G53290.1
Length=1176
Score = 1820 bits (985), Expect = 0.0
Identities = 1118/1179 (95%), Gaps = 22/1179 (2%)
Strand=Plus/Plus
Query 1 AAAAACAAACCCGTGACGCCATTAACGAAGGTCGAGCTTCCTTGACACCACACAATGCAT 60
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1 AAAAACAAACCCGTGACGCCATTAACGAAGGTCAAGCTTGCTTGACACCACACAATGCAT 60
Query 61 TCTCCTCGTAAGCTATTTCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTT 120
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCCTCGTAAGTTATTCCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTT 120
Query 121 GTCGTATTAACTTCCCTAGCTATTGGAATCGCCGGTTTCACATTTGGACTCGCCGTAATT 180
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 GTCGTATTAACTTCCTTAGCTATCGGAATCGCCGGTTTCACATTTGGACTCGCCGTGATT 180
Query 181 CTTATACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACTCCTCCGAAGACG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTTACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACTCCTCCGAAGACG 240
Query 241 GTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTAGTGGCGAAAAG-AA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 241 GTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTGGTGGCGAAA-GTAA 299
Query 300 GAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAG 359
Query 360 ACGATCACTTAGAAAGACATGGATGCCGTCAGATCCAGAAGGTCTTCGACGTTTGGAAGA 419
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 ACGATCACTTAGGAAGACATGGATGCCGTCAGATCCAGATGGTCTTCGACGTTTGGAAGA 419
Query 420 ATCTACGGGGTTAGCCATCAGGTTTATGATAGGAAAAACGAAAAGTGAGGAGAAAATGGC 479
||||||||| |||||||| |||||||||||||| ||||| |||| |||| |||||||||
Sbjct 420 ATCTACGGGATTAGCCATTAGGTTTATGATAGGGAAAACCAAAAACGAGGCGAAAATGGC 479
Query 480 TCAGCTCAGAAGAGAAATCGCAGAGTATGATGACTTCGTACTGCTAGATATCGAAGAGGA 539
| |||| ||||| ||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 480 TGAGCTTAGAAGGGAAATCGCAGAGTATGATGACTTTGTTCAGCTAGATATCGAAGAGGA 539
Query 540 GTACAGTAAGCTTCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCGTACGCGCTTTATGA 599
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 540 GTACAGTAAGCTCCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCGCTTTATGA 599
Query 600 TTCTGAGTTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCT 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCTGAATTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCT 659
Query 660 GCTATTGGCGAAAGAGCGGAGTCACTCTCAGACGTACCTAGGATGCTTGAAAAAGGGTCC 719
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 ACTATTGGCAAAAGAGCGGAGTCACTCTCAAACGTACCTAGGATGCTTGAAAAAGGGTCC 719
Query 720 GGTTTTCACAGATCCTAAGCTCAAATGGTATGAACCATTGTCTCATCTGCTGGGAAAAGA 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGTTTTCACAGATCCTAAGCTTAAATGGTATGAACCATTGTCTCATCTGCTGGGAAAAGA 779
Query 780 GTACTTTCTTCATGCTTATGGCCCGATTTATGCTCTCTCTGCTGATGTGGTAGCCAGTTT 839
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 780 GTACTTTCTTCATGCTTATGGTCCGATTTATGCTCTCTCTGCTGATGTGGTAGCAAGTTT 839
Query 840 GGTTGCCCTCAAGAATAA----CA-GTT-T------CAGGATGTTTAACAACGAGGACGT 887
|||||||||||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 840 GGTTGCCCTCAAGAATAATAGGCATGTTATGTTTTTCAGGATGTTTAACAACGAGGACGT 899
Query 888 AACAATAGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AACAATAGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTG 959
Query 948 CGAACCAGAATGCTCACCTTCTTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCT 1007
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGAACCAGAATGCTCGCCTTCCTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCT 1019
Query 1008 TTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCC 1079
Query 1068 AACTTTGCCATCAGATGATGAATGATA--T-T-ATTTCTCTTATCAAATGT-CTTTATAA 1122
|||||||||||||||||||||||||| | | ||||||||||| ||||| ||| ||||
Sbjct 1080 GACTTTGCCATCAGATGATGAATGATAGATATTATTTCTCTTATTGAATGTTCTT-ATAA 1138
Query 1123 ACCTCTTCTCAG-TGGTCGAAGCTCTATCACTTGCAGAT 1160
|||||||||| | ||||||||||||||||||||||||||
Sbjct 1139 ACCTCTTCTC-GCTGGTCGAAGCTCTATCACTTGCAGAT 1176
> Ahg929279 jgi|Araly1|929279|scaffold_301736.1
Length=1074
Score = 1011 bits (547), Expect = 0.0
Identities = 880/1041 (85%), Gaps = 22/1041 (2%)
Strand=Plus/Plus
Query 61 TCTCCTCGTAAGCTATTTCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTT 120
||| ||| |||||| ||| |||||||| |||||||| |||||||||||| ||| || ||
Sbjct 28 TCTTCTCCTAAGCTGTTTAACGCGCGGCCATCACTCTTCACGCGCCGATCGACGCCT-TT 86
Query 121 G-TCGTATTAACTTCCCTAGCTATTGGAATCGCCGGTTTCACATTT-GGACTCGCCGTAA 178
| |||| || || || || ||||| || | |||||||| | ||| ||| | || |
Sbjct 87 GATCGTCTTCACCTCTCTTGCTATCGGTCTAACCGGTTTC-CTTTTCGGATTATCCACGA 145
Query 179 TTCTTATACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACT-CCTCCGAAG 237
||||| | ||||||||||| ||| |||| || | ||| | || ||| | |||||||||
Sbjct 146 TTCTTTTCCCGGGTCTCCGGTTATCCGGCCGGACCTGCCTCACCAAC-TTGCCTCCGAAG 204
Query 238 ACGGTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTAGTGGCGAAAAG 297
||||| | ||| ||||||||||| ||||||||| || | |||| ||||||
Sbjct 205 ACGGTTAAAATCGCCTGGGACGTCGCTGGAAATAGT-AT--C---GTTAACGGCGAAGTC 258
Query 298 AAGAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGG 357
|| ||||| ||||||||||||||||| || || || |||||||| ||||||||||||||
Sbjct 259 AAAAGGCACAAGGTTATGGGATTCGTCGGAATCCAGACCGGATTCAGATCTGCTGGCCGG 318
Query 358 AGACGATCACTTAGAAAGACATGGATGCCGTCAGATCCAGAAGGTCTTCGACGTTTGGAA 417
|||||| | || || || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 319 AGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAAGGCCTTCGACGATTGGAG 378
Query 418 GAATCTACGGGGTTAGCCATCAGGTTTATGATAGGAAAAACGAAAAG-TGAGGAGAAAAT 476
||||| || || || ||||| || ||||| ||||| ||||| |||| ||||| |||||
Sbjct 379 GAATCAACAGGATTGGCCATTAGATTTATTATAGGCAAAAC-CAAAGATGAGGCCAAAAT 437
Query 477 GGCTCAGCTCAGAAGAGAAATCGCAGAGTATGATGACTTCGTACTGCTAGATATCGAAGA 536
|||| |||| ||||| |||||||||||||| |||||||| ||||||||||| |||| ||
Sbjct 438 GGCTGAGCTTAGAAGGGAAATCGCAGAGTACGATGACTTTATACTGCTAGATCTCGAGGA 497
Query 537 GGAGTACAGTAAGCTTCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCGTACGCGCTT-T 595
|||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 498 GGAGTATAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAAAGCTGCATACGC-CTTAT 556
Query 596 ATGATTCTGAGTTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCT 655
||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 557 ATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGGTTGT 616
Query 656 CTCTGCTATTGGCGAAAGAGCGGAGTCACTCTCAGACGTACCTAGGATGCTTGAAAAAGG 715
|| |||| ||||| |||||||||| |||||| ||||||||||| |||||| ||||||| |
Sbjct 617 CTTTGCTGTTGGCTAAAGAGCGGACTCACTCGCAGACGTACCTCGGATGCCTGAAAAAAG 676
Query 716 GTCCGGTTTTCACAGATCCTAAGCTCAAATGGTATGAACCATTGTCTCATCTGCT-GGGA 774
||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||||
Sbjct 677 GTCCGGTTTTCACAGATCCAAAGCTCAAATGGTATGAACCTTTGGCAGATCTGCTCGGGA 736
Query 775 AAAGAGTACTTTCTTCATGCTTATGGCCCGATTTATGCTCTCTCTGCTGATGTGGT-AGC 833
|| |||||||||||||||||||||||||| || |||||||| ||||||||||| || | |
Sbjct 737 AA-GAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTTCTGCTGATGTTGTCA-C 794
Query 834 CAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAACAACGAGGACGTAACAAT 893
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||
Sbjct 795 TAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAGCAATGAGGACGTGACTAT 854
Query 894 AGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTGCGAACC 953
|||||||||||||||||||||||| || ||||||||||| | ||||| |||||| |||||
Sbjct 855 AGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAATCTTCACACCCTTTGTGAACC 914
Query 954 AGAATGCTCACCTT-CTTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCTTTGTA 1012
||| |||||||| | || | ||||||||||||| || || ||||||||||| || ||||
Sbjct 915 AGAGTGCTCACCATACTCCA-TTGCTGTTTGGGATATACCGAAATGCTCAGGCCTCTGTA 973
Query 1013 ACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCCAACTT 1072
||||||||||||||||||||||||||||||| | ||| |||||||| |||| ||| ||||
Sbjct 974 ACCCAGAGAAAAGGATGTTGGAACTTCACAACCTAGAGAGCTGCTCAAAAACCCCGACTT 1033
Query 1073 TGCCATCAGATGATGAATGAT 1093
|||||||||||||||||||||
Sbjct 1034 TGCCATCAGATGATGAATGAT 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5