BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53300.1
Length=2404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923876 jgi|Araly1|923876|scaffold_105157.1 3105 0.0
Ahg478918 jgi|Araly1|478918|fgenesh2_kg.3__1619__AT3G14950.1 713 0.0
> Ahg923876 jgi|Araly1|923876|scaffold_105157.1
Length=2112
Score = 3105 bits (1681), Expect = 0.0
Identities = 1994/2136 (93%), Gaps = 57/2136 (3%)
Strand=Plus/Plus
Query 281 CTTTCACTCACCACAACACTCAAAATGCCCAAGTCAGTTAAACCCATCTCTGAATCTGAC 340
||||| ||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTTCTCTCGCCGGAATACTCAAAATGCCCAAGTCAGTTAAACCCATCTCTGAATCTGAC 60
Query 341 AAACTCTCCGATCATCTCCGTGATTCATCACTAACCTCCGAGATCAACAAACCTGATTTC 400
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAACTCTCCGATCATCTCCGCGATTCATCACTAACCTCCGAGATCAATAAACCTGATTTC 120
Query 401 CGTGAGCTAGATCTTGGTTCACCGGTTTCTCCGCTTCGTTCTCAGCCACGTGGACTCACC 460
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTGAACTAGATCTTGGTTCACCGGTTTCTCCGCTTCGTTCTCAGCCACGTGG------- 173
Query 461 ACCACCACTACTACTACAACCACTAGTAGCAGTAGTTCTAGCTCTTCCGGATCTGTAACG 520
| | | ||||||||||||||||| || ||||||||||||||||||||| | |||
Sbjct 174 ------AGT-C-ACTACAACCACTAGTAGTAGCAGTTCTAGCTCTTCCGGATCTCTTACG 225
Query 521 GGTCGGATTAAACATGCTCCGGTTATCGGAAGATCTAATTCTGTTCGTAGTCAATCTAAT 580
|||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 226 GGTCGGGTTAAACATGCTCCGGTCATCGGAAGATCTAATTCTCTTCGTAGTCAATCTGGT 285
Query 581 TCGTCTAGTGGGAATAATAATCTAAGACCGAGATCGGACTCTGCTACAACTTCTTCTTCT 640
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 286 TCATCTAGTGGGAATAATAATCTAAGACCGAGATCGGACTCAGCT---ACTTCTTCTTCT 342
Query 641 TCTCATTCACAACCACTTctctcctcctcctcctcctcTGCTACTTCTCCAGCTCCGACG 700
|| |||||||||||| || | | |||||||||||| | | |||| | |
Sbjct 343 TCCCATTCACAACCA--------CT--T-AT-CTCCTCTGCTAC-T-T----CTCC-A-G 382
Query 701 TCTCCGGCGAATGTACTTCCCACCGGAAACATTTGTCCTTCTGGGAAGATCCAAATCACT 760
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 383 -CTCCGGCGAATGTACTTCCCACCGGAAACATTTGTCCTTCAGGGAAGATCCAAATCACT 441
Query 761 GGAATGACTCAAAGCCGTTCAAGAAGCGATGTTCTTGGATCTGGTACTGGAACTTATGGA 820
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GGAATGACACAAACCCGTTCAAGAAGCGATGTTCTTGGATCTGGTACTGGAACTTATGGA 501
Query 821 CATGGAAGTATAATGCGAGGAGGT----G-----GTATATCTCCGGCCAAACCTACCAAC 871
|||||||| ||||||||||||||| | ||||||||||||| ||||||||| ||
Sbjct 502 CATGGAAGCATAATGCGAGGAGGTGGAGGAACTAGTATATCTCCGGCGAAACCTACC-AC 560
Query 872 -ACCGGAGGAGGATCCAACT-CGCCGGTAAATGTCGGTAGCTCTAGTAGAAGTAGTAGTA 929
|||||||||||| | || ||||||||| ||||||||||||||| || | |||||||
Sbjct 561 GACCGGAGGAGGA-GGATCTCCGCCGGTAATTGTCGGTAGCTCTAGCAG-A--AGTAGTA 616
Query 930 CTGTTGCTACGGGAGAGACTCCTATATGGAAAAAAGCGA-TTTTAGGTTCGGATTCAGAG 988
|||||| | | |||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 617 CTGTTGTTGCCGGAGAGACTCCTATATGGAAGAAAGC-AGTTTTAGGTTCGGATTCAGAG 675
Query 989 GAAGTGAAGAGAGTAGGGAATGAAATGTATAGGAAAGGTTTGTTTAATGAGGCTTTGAAG 1048
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GAAGTGAAGAGACTAGGAAATGAAATGTATAGGAAAGGTTTGTTTAATGAGGCTTTGAAG 735
Query 1049 TTGTATGATAGAGCAATAGCTTTATCTCCGACTAACGCTGCTTACCGGAGTAATCGAGCT 1108
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 736 TTGTATGATAGGGCAATAGCTTTATCGCCGACAAACGCTGCTTACCGGAGTAATCGAGCT 795
Query 1109 GCCGCATTGATTGGTTTGTCTCGAATTGGTGAAGCTGTTAAGGAATGTGAAGATGCTGTT 1168
|||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct 796 GCCGCATTGACCGGTTTGGCTCGAATTGGTGAAGCTGTTATGGAATGTGAAGAAGCTGTG 855
Query 1169 AGATCGGATCCTAACTATGGAAGAGCTCATCACCGTTTGGCCTTATTGCTTATTAGATTA 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AGATCGGATCCTAACTATGGAAGAGCTCATCACCGTTTGGCCTTATTGCTTATTAGATTA 915
Query 1229 GGTCAGGTTAATAGTGCAAGGAAGCATCTTTGTTTTCTTGGGAGACCATCAGATCCCATG 1288
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GGTCAAGTTAATAGTGCAAGGAAGCATCTTTGTTTTCTTGGGAGACCATCAGATCCCATG 975
Query 1289 GAGTTGCAGAAGCTTGAAGCAGTGGAGAAACATTTGATTAAATGTGTTGATGCGCGAAGA 1348
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 976 GAGTTGCAGAAGCTTGAAGCAGTGGAGAAACATTTGATTAAATGTGTAGATGCGCGAAGA 1035
Query 1349 GTCACTGATTGGAAAACAGTTTTGATAGAAGCAGATGCTGCTATTGTTTCTGGAGCTGAT 1408
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1036 GTCAGTGATTGGAAAACAGTTTTGACGGAAGCAGATGCTGCTATTGTTTCTGGAGCCGAT 1095
Query 1409 TTTTCTCCACAGCTATTTATGTGTAAAGTAGAAGCATTCTTGAAACTTCACCGGCTTGAT 1468
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TTTTCTCCTCAGCTATTTATGTGTAAAGTAGAAGCATTCTTGAAACTTCACCGGCTTGAT 1155
Query 1469 GATGCACAGTCAAAGCTATTAGAAGTTCCTAAAGTAGAGCCGTTCCCTGTATCTTGTTCG 1528
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1156 GATGCCCAATCAAAGCTATTAGAAGTTCCTAAAGTAGAGCCGTTCCCCGTATCTTGTTCG 1215
Query 1529 CAGACTCGGTTTTCTGGTATGGCTTGTGAAGCTTATATATATTTTGTCAAAGCTCAAATC 1588
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1216 CAGACTCGGTTTTCTGGTATGGCTTGTGAAGCTTATACATATTTTGTCAAAGCTCAAATC 1275
Query 1589 GAGATGGCTTTAGGAAGGTTTGAAAATGCAGTTATGGCTGCTGAGAAAGCTAGCCAAATC 1648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GAGATGGCGTTAGGAAGGTTTGAAAATGCAGTTATGGCTGCTGAGAAAGCTAGCCAAATC 1335
Query 1649 GATCCAAGATGCAACGAAGTTGCTATGTTACATAATACTGTTACATTGGTTGCTAGGGCT 1708
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 GATCCACGATGCAACGAAGTTGCTATGTTACATAATACTGTTACATTGGTTGCTAGGGCT 1395
Query 1709 CGTGCTCGTGGCAATGATCTTTATAAATCAGAAAGATACACTGAAGCAAGTTCAGCTTAT 1768
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1396 CGTGCTCGTGGTAACGATCTTTATAAATCAGAAAGATACACTGAAGCTAGTTCAGCTTAT 1455
Query 1769 GCTGAAGGCCTTAGGCTTGATCCTTGCAACGCTATTCTATATTGTAATCGAGCAGCTTGT 1828
|| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||
Sbjct 1456 GCAGAAGGCCTTAGGCTTGATCCTTGCAACGCTATCCTATATTGTAACCGGGCAGCGTGT 1515
Query 1829 TGGTTTAAACTTGGAATGTGGGAACGCTCGATTGAAGATTGTAACCAAGCGCTGCGTTAT 1888
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1516 TGGTTTAAACTTGGAATGTGGGAACGCTCTATTGAAGATTGTAACCAAGCGCTGCGTTAT 1575
Query 1889 CAACCAAGTTACACAAAGCCACTTCTTCGGAGGGCTGCCTCAAATAGCAAGATGGAAAGA 1948
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 CAACCATGTTACACAAAGCCACTTCTTCGGAGGGCTGCCTCAAATAGCAAGATGGAAAGA 1635
Query 1949 TGGGGAGCTGCAGTGAGTGATTATGAGGCCTTGATAAGAGAACTTCCTCATGACAAGGAA 2008
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1636 TGGGGAGCTGCAGTGAGTGATTACGAGGCCTTGATAAGAGAACTACCTCATGACAAGGAA 1695
Query 2009 GTTGCTGAATCTTTATTCCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTT 2068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 GTTGCTGAATCTTTATTCCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTT 1755
Query 2069 TTAAATATGGAATTTGGTGGCGAAGTAGAGGAAATTTATAGTCTTGAACAGTTTAAATCT 2128
|||||||||||||||||||| || || |||||| ||||||| | ||||||||||||| ||
Sbjct 1756 TTAAATATGGAATTTGGTGGTGATGTTGAGGAAGTTTATAGCCGTGAACAGTTTAAAACT 1815
Query 2129 GCCATGAATTTACCAGGAGTTTCGGTTATCCATTTCTCGACAGCCTCTGATCATCAATGC 2188
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1816 GCCATTAATTTACCAGGAGTTTCGGTTATCCATTTCTCGACAGCTTCTGATCATCAATGC 1875
Query 2189 AAGCAAATATCTCCATTCGTGGACTCGCTATGTACTCGTTACCCATCTATACACTTCCTC 2248
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1876 AAGCAAATATCTCCATTTGTGGACTCGCTATGTACTCGGTATCCATCTATACACTTCCTC 1935
Query 2249 AAGGTGGATATCGATAAATGTCCTTCAATAGGTAATGCAGAGAATGTGAGGGTTGTACCG 2308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 AAGGTGGATATCGATAAATGTCCTTCAATAGGTAATGCAGAGAATGTGAGGGTTGTACCG 1995
Query 2309 ACAGTGAAGATATACAAGAACGGTAGTCGGGTTAAGGAGATTGTCTGTCCAAGCAAAGAA 2368
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1996 ACAGTGAAGATATACAAGAACGGTAGTCGGGTAAAGGAGATTGTCTGTCCAAGCAAAGAA 2055
Query 2369 GTGTTGGAGTACTCGGTGAGACACTATAGCGGTTAA 2404
||||||||||||||||||||||||||||||||||||
Sbjct 2056 GTGTTGGAGTACTCGGTGAGACACTATAGCGGTTAA 2091
> Ahg478918 jgi|Araly1|478918|fgenesh2_kg.3__1619__AT3G14950.1
Length=2148
Score = 713 bits (386), Expect = 0.0
Identities = 936/1193 (78%), Gaps = 72/1193 (6%)
Strand=Plus/Plus
Query 974 GGTTCGGATTCAGAGGAAGTGAAGAGAGTAGGGAATGAAATGTAT-AGGAAAGGTTTG-T 1031
||||| || |||| ||||| |||||| | || || ||||||| | | |||||| ||| |
Sbjct 745 GGTTCAAATCCAGAAGAAGTAAAGAGATTTGGTAACGAAATGT-TCAAGAAAGG-TTGTT 802
Query 1032 TTAATGAGGCTTTGAAGTTGTATGATAGAGCAA-T-AGCTTTATCTCCGACTAACGCTGC 1089
||| |||||||||||||||||||||| |||||| | ||| || || |||| ||| ||| |
Sbjct 803 TTACTGAGGCTTTGAAGTTGTATGATCGAGCAATTGAGC-TT-TCACCGAGTAATGCTAC 860
Query 1090 TTACCGGAGTAATCGAGCTGCCGCATTGAT-TGGTTTGTCTCGA-ATTGGTGAAGCTGTT 1147
||||| || ||| |||| || ||||| || ||||| | | ||||||||||||||
Sbjct 861 TTACCATAGCAATAGAGCAGCTGCATT-ATCAAGTTTGGGAC-AGATTGGTGAAGCTGTG 918
Query 1148 AAGGAATGTGAAGAT-GCTGTTAGATCGGATCCTAACTATGGAAGAGCTCATCACCGTTT 1206
|| ||||||||| || ||| | | || ||||| || | || ||| ||||||||||||||
Sbjct 919 AATGAATGTGAA-ATGGCTATCAAATTAGATCCAAAATTTGCAAGGGCTCATCACCGTTT 977
Query 1207 GGCCTTATTGCTTATTAGATTAGGTCAGGTTAATAGTGCAAGGA-AGCATCTTTGTTTTC 1265
|||| ||||||| ||||||||||| | || ||| |||| ||| | ||| ||| | |||
Sbjct 978 AGCCTCATTGCTTCTTAGATTAGGTTATGTGGATAATGCAGGGATA-CAT-TTT-TATTC 1034
Query 1266 TTG-GGA-G-ACCATCAGATCCCA-TGGAGTTGCAGAA-GCTTGAAGC-AGTGGAGAAAC 1319
| ||| | |||| ||||||||| | |||| | || |||| || | ||| || ||||
Sbjct 1035 -AGTGGAGGAACCAGCAGATCCCACTCTAGTT--AAAATGCTTCAA-CAAGTAGATAAAC 1090
Query 1320 ATTTGATTAAATG-TGTTGATGCGCGAAGA-GTCACTGATTGGAAAACAGTTTTGATAGA 1377
| |||| ||||| | |||| ||||| | | ||| ||||| | ||||||| |||
Sbjct 1091 ACTTGAACAAATGCACAT-ATGCAAGAAGACG-CGGTGAATGGAATATTGTTTTGACAGA 1148
Query 1378 AG-CAGATGCTGCTATTGTTTCTGGAGCTGATTTTTCTCCACAGCTATTTATGTGTAAAG 1436
|| || ||| || |||| ||||||||||| | |||||| |||||| |||||||||||
Sbjct 1149 AGTAAG-TGCAGCCATTGCCTCTGGAGCTGACTCTTCTCCTCAGCTAGCTATGTGTAAAG 1207
Query 1437 TAGAAGCA-TTCTTGAAACTTC-ACCGGCTTGATGATGCACAGTCAAAG-CTATTAGAA- 1492
| |||||| | | ||||||||| | ||||||||||||| | |||||| || |||||
Sbjct 1208 TTGAAGCACTAC-TGAAACTTCTA-CGGCTTGATGATG--C--TCAAAGAGTACTAGAAT 1261
Query 1493 GT-T-CCTAAAGTAGAGCCGTTCCCTG-TATCTTGT-TCGCAGACTC-GGTTTTCTGGTA 1547
|| | || |||||||| || ||||| | | |||| | || || |||| ||||||| | ||
Sbjct 1262 GTGTCCCCAAAGTAGAACCATTCCCAGCT-TCTT-TCTCACATACTCGGGTTTTC-GATA 1318
Query 1548 TG-GCTTGTGAAGCTTATATATATTTTGTCAAAGCTCAAATCGAGATGGCTTTAGGAAGG 1606
|| | | ||||||||| | || |||||||||| | ||||| ||| ||||| ||||||||
Sbjct 1319 TGAAC-TCTGAAGCTTACACATCTTTTGTCAAATCCCAAATGGAGTTGGCTCTAGGAAGG 1377
Query 1607 TTTGAAAATGCAGTTATGGCTGCTGAGAAAGC-T-AGCCAAATCGATCCAAGATGCAACG 1664
|||||||||||||||| |||| |||||||| | || | || ||||||| | ||| |
Sbjct 1378 TTTGAAAATGCAGTTACAACTGCAGAGAAAGCTTCAG--AGATTGATCCAAAAAACAATG 1435
Query 1665 AAGTTGCTATGTTACATAATACTGTTACATTGGTTGCTAGGGCTCGTGCTCGTGGCAATG 1724
|||||| || || |||| | ||||| ||| || ||||||| |||| |||||| || |
Sbjct 1436 AAGTTGAAATTTTGTATAAAAATGTTAGATTAATTACTAGGGCGCGTGATCGTGGTAACG 1495
Query 1725 ATCTTTATAAATCAGAAAGATACACTGAAGCAAGTTCAGCTTATGCTGAAGGCCTTAGGC 1784
|||||||| ||| |||||||||||||||||| || ||||||||||| |||||||||| |
Sbjct 1496 ATCTTTATGAATTAGAAAGATACACTGAAGCGAGATCAGCTTATGCGGAAGGCCTTAAG- 1554
Query 1785 T-TGATCCTTGCAACGCTATTCT-ATATTGTAATCGAGCAGCTTGTTGGTTTAAA-CTTG 1841
| |||||| | ||| |||| ||| || ||| || |||||| ||||| |||||| |||
Sbjct 1555 TATGATCCATCCAATGCTACTCTGTTA-TGTCATAGAGCAGATTGTTTCTTTAAAGTTTG 1613
Query 1842 GAATGTGGGA-ACGCTCGATTGAAGATTGTAACCAAGCGCTGCGTTA-TCAACCAAGTTA 1899
| |||||||| | |||| || |||||||||||||| ||| ||| | | || ||| |||||
Sbjct 1614 G-ATGTGGGAGA-GCTCAATAGAAGATTGTAACCATGCGTTGC-TCATTCTACCGAGTTA 1670
Query 1900 CACAAAGCCACTTCTTCGGAGGGCTGCCTCAAATAGCAAGATGGAAAGATGGGGAGCTGC 1959
||||||||| | ||||| || ||||| ||| |||||||| |||||||||||| | ||
Sbjct 1671 CACAAAGCCTCGTCTTCAAAGAGCTGCTTCATATAGCAAGTTGGAAAGATGGGCTGAAGC 1730
Query 1960 AGTGAGTGATTATGAGGCCTT--GATAAGAGAACTTCCTCATGACAAGGAAGTTGCTGAA 2017
|||||| ||||| ||| ||| || ||| ||||| ||| ||||||||||| ||||||||
Sbjct 1731 AGTGAGCGATTACGAGATCTTAAGA-AAG-GAACTGCCTTATGACAAGGAAATTGCTGAA 1788
Query 2018 TCTTTATTCCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTTTTAAATATG 2077
|||||||| ||||||||||||||||||||||||||||| || |||| |||| |||| |||
Sbjct 1789 TCTTTATTTCATGCTCAAGTTGCATTGAAGAAATCTCGCGGCGAAGTAGTTCTAAACATG 1848
Query 2078 GAATTTGGTGGCGAAGTAGAGGAAATTTATAGTCTTGAACAGTTTAAATCTGC 2130
|||||||| | ||||| |||||||||| |||||||||| |||| ||| ||||
Sbjct 1849 GAATTTGGAAGTGAAGTTGAGGAAATTTCTAGTCTTGAAGAGTTAAAAGCTGC 1901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90578602610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5