BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53320.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923879 jgi|Araly1|923879|scaffold_105160.1 1842 0.0
> Ahg923879 jgi|Araly1|923879|scaffold_105160.1
Length=1191
Score = 1842 bits (997), Expect = 0.0
Identities = 1132/1194 (95%), Gaps = 22/1194 (2%)
Strand=Plus/Plus
Query 56 gaaaca--tctctcttcACAAAATGCCTTTGTCACGGTCCCTCCTTTCGCGGAGGATCTC 113
|||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAAACATCTCTCTCTTCAC-AAATGCCTTTGTCACGGTCCCTTCTTTCGCGGAGGATCTC 59
Query 114 GAACTCTTTTAGG-TT--TCATCAGGGAGAGACAAC-G-A-CGGCA-CCGGAATC---CG 163
|||||| |||||| || ||||||||||||||| || | | ||| | || || || ||
Sbjct 60 GAACTCGTTTAGGTTTCATCATCAGGGAGAGACGACGGCACCGGAATCC-GATTCGTACG 118
Query 164 AATCGATTCCTCCGCCGTCGAATATGGCCGGTTCTTCGTCATGGTCGGCGATGCTCCCTG 223
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 119 AATCGATTCCTCCGCCGTCGAATATGGCCGGTTC-T--TCATGGTCGGCGATGCTCCCTG 175
Query 224 AATTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAGGACCGTTGGCCTCAACGTC 283
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 176 AGTTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAAGACCGTTGGCCTCAACGTA 235
Query 284 GTGATGTAGTTACTTGCGCTTGCGTTTCTAAGAAATGGAGAGAAATCACTCACGATTTCG 343
| ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 236 GAGATGTAGTTACTTGCGCTTGCGTCTCGAAGAAATGGAGAGAAATTACTCAGGATTTTG 295
Query 344 CTAGAT-C-C-TCTCTTAACTCTGGCAAAATTACTTTCCCTTCTTGCCTCAAATTGCCAG 400
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTAGATCCTCTTCTCTTAACTCTGGCAAAATTACTTTCCCTTCTTGCCTCAAATTGCCAG 355
Query 401 GTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTT 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 GTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACCTTTT 415
Query 461 ACTTGTATCTTGCTCTAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCGC 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 416 ACTTGTATCTTGCTCTAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCAC 475
Query 521 GGAGGTTTAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGATTTCT 580
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGAGGTTCAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGATTTCT 535
Query 581 CTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGATCAGATTTTCTTGGGACCAACTTTA 640
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 536 CTCAAGGAAGTAATGCCTACGTTGGAAAATTAAGATCAGATTTTCTTGGGACGAACTTTA 595
Query 641 CAGTATACGATAGCCAACCACCACACAACGGAGCAAAACCTTCAAATGGCAAAGCCAGTC 700
| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 596 CGGTATATGATAGCCAACCGCCACATAACGGAGCAAAACCTTCTAATGGCAAAGCCAGTC 655
Query 701 GCAGATTTGCATCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTC 760
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GCAGATTTGCGTCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTC 715
Query 761 ATGTTTCTTATAAATTCAACCTTTTGAAATCAAGAGGTCCAAGAAGAATGGTAAGCACAC 820
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 716 ATGTTTCTTATAAATTCAACCTTCTGAAATCAAGAGGTCCAAGAAGAATGATAAGCACAC 775
Query 821 TCCGATGCCCATCAC-CATCACCTTCATCATCATCCGCTGGACTCTCGTCTGACCAAAAG 879
||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 776 TCCGATGCCCATC-CTCATCACCATCATCATCATCCGCTGGACTCTCGTCCGACCAAAAG 834
Query 880 CCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTGACAATA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTCACAATA 894
Query 940 CTAAAGAACAAAGCTCCTAGATGGCACGAGCACTTGCAGTGCTGGTGTCTGAACTTCCAT 999
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 895 CTAAAGAACAAAGCTCCTAGATGGCATGAGCACTTACAGTGCTGGTGTCTGAACTTCCAT 954
Query 1000 GGACGAGTTACTGTTGCTTCGGTCAAGAACTTTCAGCTGGTTGCGACCGTTGACCAAAGT 1059
|||||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 955 GGACGAGTAACCGTTGCTTCAGTCAAGAACTTCCAGCTGGTTGCGACTGTTGACCAAAGT 1014
Query 1060 CAACCGAGCGGTAAAGGCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGAT 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAACCGAGCGGTAAAGGCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGAT 1074
Query 1120 GACACTTTCACTATGGATTATAGACAGCCTCTCTCTGCATTTCAGGCTTTTGCTATCTGT 1179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1075 GACACTTTCACTATGGATTATAGACAGCCACTCTCTGCATTTCAGGCTTTTGCTATCTGT 1134
Query 1180 CTCACAAGTTTCGGCACTAAACTTGCCTGCGAGTGAAACCCAACAAAAGGCAAC 1233
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1135 CTCACAAGTTTCGGCACTAAACTTGCCTGCGAGTGAAACCCACCAAAAGGGAAC 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5