BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53325.1
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314657 jgi|Araly1|314657|fgenesh1_pm.C_scaffold_1003437 656 0.0
Ahg338425 jgi|Araly1|338425|fgenesh1_pg.C_scaffold_2000524 483 7e-136
Ahg925188 jgi|Araly1|925188|scaffold_200749.1 481 2e-135
Ahg925189 jgi|Araly1|925189|scaffold_200750.1 385 2e-106
Ahg925246 jgi|Araly1|925246|scaffold_200807.1 303 6e-82
> Ahg314657 jgi|Araly1|314657|fgenesh1_pm.C_scaffold_1003437
Length=450
Score = 656 bits (355), Expect = 0.0
Identities = 419/450 (93%), Gaps = 4/450 (1%)
Strand=Plus/Plus
Query 60 GCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGAA 119
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 3 GCTCGATTTTTCGAAAGAGACATTAAAGATGTTTTGTATTCTACCGTGTAAGGCGAAAAA 62
Query 120 AAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGATGGA 179
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 63 AAGTTCTACACATACTCGTATCCTCTCTATTTACAAGGGAGATCGGTTTTCAGTGATGGA 122
Query 180 ACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGG 182
Query 240 GGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC 299
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GGATGATGGAGACGATGTCGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC 242
Query 300 CATGGTACTTTGTCA-TAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGA 358
| |||||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 243 CTTGGTACTTAATCACTA-TTCTACAAGTTACTTCGTCGATGATAATATCTATGGGAAGA 301
Query 359 GCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGT-CTATATTGTGAGG 417
|||||||| |||||| | |||||||||||||||||||||||||||| | |||||||||||
Sbjct 302 GCTTCGTTCTATGTTGTCCTACCAAGAAACCTAAACAAGCTTGGGTTC-ATATTGTGAGG 360
Query 418 GGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTGTATGTACGTTCCAATCCTGTGCC 477
|||||||||| |||||||||||||||||||||||| ||||| | ||| |||||| || |
Sbjct 361 GGAGATCTGTACAAAAAGATTAAGATAGATGAAGTGGTATGCAAGTTTGAATCCTCTGTC 420
Query 478 TATGTTCCCAGTTTGATCTCCATTCCTTGA 507
| |||||||||||||||| |||||||||||
Sbjct 421 TTTGTTCCCAGTTTGATCACCATTCCTTGA 450
> Ahg338425 jgi|Araly1|338425|fgenesh1_pg.C_scaffold_2000524
Length=1101
Score = 483 bits (261), Expect = 7e-136
Identities = 394/457 (86%), Gaps = 14/457 (3%)
Strand=Plus/Plus
Query 1 ATGGAAATTTGTACTGGACAGCTTAT-AAT-T-CCAAAACTGGTCAGTATTTCATCCAAA 57
|||||||| |||||||||||| |||| ||| | || |||||||||||||||||||| |||
Sbjct 572 ATGGAAATGTGTACTGGACAGGTTATAAATATCCCGAAACTGGTCAGTATTTCATCGAAA 631
Query 58 TGGCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAG 117
| |||||||||||| |||||| | ||||||| || ||| || |||| ||||||| |||
Sbjct 632 T-GCTCGATTTTTCGAAAGAGGTAATAAAGATCTTTTGTGTTTTACCGTGTAAGGGGAA- 689
Query 118 AAAA-GTACTACTCATAC-TCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA 175
|||| || || | ||| | |||||| ||||| |||||||| ||||||||||||||||||
Sbjct 690 AAAATGTGCTTCCCAT-CATCGTATGCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGT 748
Query 176 TGGAACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTA 235
| ||||||||| ||||||||| |||||| |||||||||||||| |||| ||||||||||
Sbjct 749 TACAACAATGCACAAGAACAAGCGAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTA 808
Query 236 ATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACT 295
| |||||||||||| || |||| |||||||||||||||||||||||||||| |||| ||
Sbjct 809 ACGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAAGACCTGACC 868
Query 296 TCCCCATGGTACTTTGTCATAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGA 355
|||||||| ||||| ||| | | |||||||||||||||||||||| ||||| |||||
Sbjct 869 TCCCCATGTTACTTAGTC---A--C-ACAAGTTACTTCGTCGATGATAATATCTATGGGA 922
Query 356 AGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGA 415
||||||||||| | |||| || ||||||||||| |||||||||||||||||||||||
Sbjct 923 AGAGCTTCGTTCTGTGTTGCAATAGCAAGAAACCTAGACAAGCTTGGGTCTATATTGTGA 982
Query 416 GGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGT 452
|||||||| |||||||||||||||||||||||| |||
Sbjct 983 GGGGAGATATGTGCAAAAAGATTAAGATAGATGGAGT 1019
> Ahg925188 jgi|Araly1|925188|scaffold_200749.1
Length=1154
Score = 481 bits (260), Expect = 2e-135
Identities = 441/525 (84%), Gaps = 25/525 (5%)
Strand=Plus/Plus
Query 1 ATGGAAATTTGTACTGGACAGCT--TA-TAATTCCAAAACTGGTCAGTATTTCATCCA-A 56
||||||||||||||||||||||| || | || || ||||||||||||||||||| || |
Sbjct 617 ATGGAAATTTGTACTGGACAGCTCATACTTATCCCGAAACTGGTCAGTATTTCAT-CAGA 675
Query 57 ATGGCTCGATTTTTC-CAA-AG--AGACA--T-T--AAAGATGTTCTGTATTCTACCATG 107
|| |||||||||||| || || ||| | | | ||||| |||||| || |||| ||
Sbjct 676 AT-GCTCGATTTTTCGAAAGAGATAGAAATGTGTCAAAAGACATTCTGTGTTTTACCGTG 734
Query 108 TAAGGCGAAGAAAAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTT 167
||||| || ||||||||||| ||||||||| ||||||| || ||||| |||||||||||
Sbjct 735 TAAGGAAAAAAAAAGTACTACACATACTCGTGTCCTCTCGATGTACAAGGGAGATCGGTT 794
Query 168 TTCAGTGATGGAACAATGCA-AAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATA 226
||||||| | ||||||| || ||| |||||| |||||||||||||||||||||||| |||
Sbjct 795 TTCAGTGTTAGAACAATCCAGAAA-AACAAGAGAGATTGAGATTTGGGTGACAAAGGATA 853
Query 227 AAATTGGTAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAA 286
||||| |||||| |||| ||||| | || || |||||||||||||||||||| |||||||
Sbjct 854 AAATTAGTAATGCGGATAATGGAGATGACGTGGTGTGGATTAAGTTCATGACGGTCTCAA 913
Query 287 TACCTAACTTCCCCATGGTACTTTGTCATAAT-TCTACAAGTTACTTCGTCGATGATAGT 345
||||| ||||||| ||||||||| |||| || ||||||| || ||||||||| ||| |
Sbjct 914 TACCTGACTTCCCTATGGTACTTAGTCA-CATGTCTACAAAATATTTCGTCGATAATAAT 972
Query 346 ATCTCTGGGAAGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAA-CAAGCTTGGGT 404
|||| ||| |||||||| ||| | |||| | | | ||||| ||||||| | |||||||||
Sbjct 973 ATCTATGGAAAGAGCTTTGTTCTGTGTTGTCCAAGCAAGATACCTAAAGC-AGCTTGGGT 1031
Query 405 CTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTG-TATGT-ACG 462
|||||||||||||||||||||||||||||||||||||||||| |||| | ||||| | |
Sbjct 1032 GTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATCAAGT-GCTATGTGA-G 1089
Query 463 TTCCAATCCTGTGCCTATGTTCCCAGTTTGATCTCCATTCCTTGA 507
|| | |||| || ||||||||| ||||||||| |||||||||||
Sbjct 1090 TTTGAGTCCTCTGTCTATGTTCCAAGTTTGATCACCATTCCTTGA 1134
> Ahg925189 jgi|Araly1|925189|scaffold_200750.1
Length=1070
Score = 385 bits (208), Expect = 2e-106
Identities = 332/390 (85%), Gaps = 16/390 (4%)
Strand=Plus/Plus
Query 126 TACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA-TGGAACAAT 184
||||||||||||| |||| | |||||||| |||||||||||||||| | | |||||||
Sbjct 669 TACTCATACTCGTGGCCTCGCGATTTACAAGGGAGATCGGTTTTCAG-CATTAGAACAAT 727
Query 185 GCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGGGGATG 244
||| || ||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 728 GCACAATAACCAGAGAGATTGAGATTTGGGTGACAACGAATAAAATTGGTAATGGGGATG 787
Query 245 ATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC-CATG 303
||||| || |||| |||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 788 ATGGAGACAATGTGGTGTGGATCAAGTTCATGACTGTCTCAATACCTAACTTCCCAC-TG 846
Query 304 GTACTTTGTCATAA--T-TCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGAGC 360
|| | |||| || | ||| ||||||||||||||||| ||| ||||| ||| ||||||
Sbjct 847 GTTC---GTCACAACATGTCTTCAAGTTACTTCGTCGATAATAATATCTATGGAAAGAGC 903
Query 361 TTCGTTTTATGTTTTTCT-ACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGAGGGG 419
|||||| | |||| | || | | ||||||||||||||||||| ||||||||||||||||
Sbjct 904 TTCGTTATGTGTTAT-CTTAACGTGAAACCTAAACAAGCTTGGATCTATATTGTGAGGGG 962
Query 420 AGATCTGTGCAAAAAGATTAAGATAGATGAAGTTG-TATGT-ACGTTCCAATCCTGTGCC 477
|||| ||||||||||||||||| | |||||||| | ||||| | ||| ||||| ||
Sbjct 963 AGATGTGTGCAAAAAGATTAAGGTTGATGAAGT-GCTATGTGA-GTTTTTATCCTATGTT 1020
Query 478 TATGTTCCCAGTTTGATCTCCATTCCTTGA 507
|||||||| ||||||||| ||||| |||||
Sbjct 1021 TATGTTCCTAGTTTGATCACCATTTCTTGA 1050
> Ahg925246 jgi|Araly1|925246|scaffold_200807.1
Length=1149
Score = 303 bits (164), Expect = 6e-82
Identities = 364/457 (80%), Gaps = 27/457 (6%)
Strand=Plus/Plus
Query 1 ATGGAAATTTGTACTGGACAGCTTATAATTCCAAAACTGGTCAGTATTTCATCCA-AATG 59
|||||||||||| | |||||||||| ||| | |||||||||||||| |||| || |||
Sbjct 619 ATGGAAATTTGTTTTCGACAGCTTATGATTTCGAAACTGGTCAGTATATCAT-CAGAAT- 676
Query 60 GC-TCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGA 118
| |||||||||||||||||| | | ||| || ||||||||||| ||| | ||||
Sbjct 677 -CTTCGATTTTTCCAAAGAGATAGTGAAGCCCTTTTGTATTCTACCGTGT---GAGAAG- 731
Query 119 AAAG-TAC-TACTCATACTCGTATCCTCT-CTATTTACAAAGGAGATCGGTTTTCAG-TG 174
|||| | | || || |||| | ||| | | ||||||| |||||||| ||||| | ||
Sbjct 732 AAAGATTCAAAC-CAAACTCATGCCCT-TGCGGTTTACAAGGGAGATCGATTTTC-GTTG 788
Query 175 ATGGAACAATGC-AAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGG 233
| ||||||||| | || ||| || |||||||||||||||| |||||||| |||||| |
Sbjct 789 TTAGAACAATGCTATAA-AACGAGCAAGATTGAGATTTGGGTTACAAAGAAGAAAATTAG 847
Query 234 TAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAA 293
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 848 TAATGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAATACCTAA 907
Query 294 CTTCCCCATGGTACTTTGTCATAA-TTCTACAAGTTACTTCGTCGATGATAGTATCTCTG 352
|||||||| ||| ||| ||| | || | | || ||| | |||||| ||| ||||| ||
Sbjct 908 CTTCCCCA-GGT--TTTATCACACGTTTT-CGAGATACATGGTCGATAATAATATCTGTG 963
Query 353 GGAAGAGCTTCGTTTTATGTTTTTCT-ACCA-AGAAACCTAAACAAGCTTGGGTCTATAT 410
| |||| |||||| | |||| | | | | | |||| || || |||||||||||| |
Sbjct 964 GAAAGACCTTCGTCATGTGTTGTCCCGATGACA-AAAC-TAGACGGGCTTGGGTCTATGT 1021
Query 411 TGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGAT 447
||||||||||||||| ||||| |||||||| ||||||
Sbjct 1022 TGTGAGGGGAGATCTTTGCAAGAAGATTAAAATAGAT 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18429149487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5