BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53325.1 Length=507 Score E Sequences producing significant alignments: (Bits) Value Ahg314657 jgi|Araly1|314657|fgenesh1_pm.C_scaffold_1003437 656 0.0 Ahg338425 jgi|Araly1|338425|fgenesh1_pg.C_scaffold_2000524 483 7e-136 Ahg925188 jgi|Araly1|925188|scaffold_200749.1 481 2e-135 Ahg925189 jgi|Araly1|925189|scaffold_200750.1 385 2e-106 Ahg925246 jgi|Araly1|925246|scaffold_200807.1 303 6e-82 > Ahg314657 jgi|Araly1|314657|fgenesh1_pm.C_scaffold_1003437 Length=450 Score = 656 bits (355), Expect = 0.0 Identities = 419/450 (93%), Gaps = 4/450 (1%) Strand=Plus/Plus Query 60 GCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGAA 119 |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 3 GCTCGATTTTTCGAAAGAGACATTAAAGATGTTTTGTATTCTACCGTGTAAGGCGAAAAA 62 Query 120 AAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGATGGA 179 |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 63 AAGTTCTACACATACTCGTATCCTCTCTATTTACAAGGGAGATCGGTTTTCAGTGATGGA 122 Query 180 ACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 ACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGG 182 Query 240 GGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC 299 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 183 GGATGATGGAGACGATGTCGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC 242 Query 300 CATGGTACTTTGTCA-TAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGA 358 | |||||||| ||| || |||||||||||||||||||||||||| ||||| |||||||| Sbjct 243 CTTGGTACTTAATCACTA-TTCTACAAGTTACTTCGTCGATGATAATATCTATGGGAAGA 301 Query 359 GCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGT-CTATATTGTGAGG 417 |||||||| |||||| | |||||||||||||||||||||||||||| | ||||||||||| Sbjct 302 GCTTCGTTCTATGTTGTCCTACCAAGAAACCTAAACAAGCTTGGGTTC-ATATTGTGAGG 360 Query 418 GGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTGTATGTACGTTCCAATCCTGTGCC 477 |||||||||| |||||||||||||||||||||||| ||||| | ||| |||||| || | Sbjct 361 GGAGATCTGTACAAAAAGATTAAGATAGATGAAGTGGTATGCAAGTTTGAATCCTCTGTC 420 Query 478 TATGTTCCCAGTTTGATCTCCATTCCTTGA 507 | |||||||||||||||| ||||||||||| Sbjct 421 TTTGTTCCCAGTTTGATCACCATTCCTTGA 450 > Ahg338425 jgi|Araly1|338425|fgenesh1_pg.C_scaffold_2000524 Length=1101 Score = 483 bits (261), Expect = 7e-136 Identities = 394/457 (86%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 1 ATGGAAATTTGTACTGGACAGCTTAT-AAT-T-CCAAAACTGGTCAGTATTTCATCCAAA 57 |||||||| |||||||||||| |||| ||| | || |||||||||||||||||||| ||| Sbjct 572 ATGGAAATGTGTACTGGACAGGTTATAAATATCCCGAAACTGGTCAGTATTTCATCGAAA 631 Query 58 TGGCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAG 117 | |||||||||||| |||||| | ||||||| || ||| || |||| ||||||| ||| Sbjct 632 T-GCTCGATTTTTCGAAAGAGGTAATAAAGATCTTTTGTGTTTTACCGTGTAAGGGGAA- 689 Query 118 AAAA-GTACTACTCATAC-TCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA 175 |||| || || | ||| | |||||| ||||| |||||||| |||||||||||||||||| Sbjct 690 AAAATGTGCTTCCCAT-CATCGTATGCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGT 748 Query 176 TGGAACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTA 235 | ||||||||| ||||||||| |||||| |||||||||||||| |||| |||||||||| Sbjct 749 TACAACAATGCACAAGAACAAGCGAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTA 808 Query 236 ATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACT 295 | |||||||||||| || |||| |||||||||||||||||||||||||||| |||| || Sbjct 809 ACGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAAGACCTGACC 868 Query 296 TCCCCATGGTACTTTGTCATAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGA 355 |||||||| ||||| ||| | | |||||||||||||||||||||| ||||| ||||| Sbjct 869 TCCCCATGTTACTTAGTC---A--C-ACAAGTTACTTCGTCGATGATAATATCTATGGGA 922 Query 356 AGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGA 415 ||||||||||| | |||| || ||||||||||| ||||||||||||||||||||||| Sbjct 923 AGAGCTTCGTTCTGTGTTGCAATAGCAAGAAACCTAGACAAGCTTGGGTCTATATTGTGA 982 Query 416 GGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGT 452 |||||||| |||||||||||||||||||||||| ||| Sbjct 983 GGGGAGATATGTGCAAAAAGATTAAGATAGATGGAGT 1019 > Ahg925188 jgi|Araly1|925188|scaffold_200749.1 Length=1154 Score = 481 bits (260), Expect = 2e-135 Identities = 441/525 (84%), Gaps = 25/525 (5%) Strand=Plus/Plus Query 1 ATGGAAATTTGTACTGGACAGCT--TA-TAATTCCAAAACTGGTCAGTATTTCATCCA-A 56 ||||||||||||||||||||||| || | || || ||||||||||||||||||| || | Sbjct 617 ATGGAAATTTGTACTGGACAGCTCATACTTATCCCGAAACTGGTCAGTATTTCAT-CAGA 675 Query 57 ATGGCTCGATTTTTC-CAA-AG--AGACA--T-T--AAAGATGTTCTGTATTCTACCATG 107 || |||||||||||| || || ||| | | | ||||| |||||| || |||| || Sbjct 676 AT-GCTCGATTTTTCGAAAGAGATAGAAATGTGTCAAAAGACATTCTGTGTTTTACCGTG 734 Query 108 TAAGGCGAAGAAAAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTT 167 ||||| || ||||||||||| ||||||||| ||||||| || ||||| ||||||||||| Sbjct 735 TAAGGAAAAAAAAAGTACTACACATACTCGTGTCCTCTCGATGTACAAGGGAGATCGGTT 794 Query 168 TTCAGTGATGGAACAATGCA-AAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATA 226 ||||||| | ||||||| || ||| |||||| |||||||||||||||||||||||| ||| Sbjct 795 TTCAGTGTTAGAACAATCCAGAAA-AACAAGAGAGATTGAGATTTGGGTGACAAAGGATA 853 Query 227 AAATTGGTAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAA 286 ||||| |||||| |||| ||||| | || || |||||||||||||||||||| ||||||| Sbjct 854 AAATTAGTAATGCGGATAATGGAGATGACGTGGTGTGGATTAAGTTCATGACGGTCTCAA 913 Query 287 TACCTAACTTCCCCATGGTACTTTGTCATAAT-TCTACAAGTTACTTCGTCGATGATAGT 345 ||||| ||||||| ||||||||| |||| || ||||||| || ||||||||| ||| | Sbjct 914 TACCTGACTTCCCTATGGTACTTAGTCA-CATGTCTACAAAATATTTCGTCGATAATAAT 972 Query 346 ATCTCTGGGAAGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAA-CAAGCTTGGGT 404 |||| ||| |||||||| ||| | |||| | | | ||||| ||||||| | ||||||||| Sbjct 973 ATCTATGGAAAGAGCTTTGTTCTGTGTTGTCCAAGCAAGATACCTAAAGC-AGCTTGGGT 1031 Query 405 CTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTG-TATGT-ACG 462 |||||||||||||||||||||||||||||||||||||||||| |||| | ||||| | | Sbjct 1032 GTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATCAAGT-GCTATGTGA-G 1089 Query 463 TTCCAATCCTGTGCCTATGTTCCCAGTTTGATCTCCATTCCTTGA 507 || | |||| || ||||||||| ||||||||| ||||||||||| Sbjct 1090 TTTGAGTCCTCTGTCTATGTTCCAAGTTTGATCACCATTCCTTGA 1134 > Ahg925189 jgi|Araly1|925189|scaffold_200750.1 Length=1070 Score = 385 bits (208), Expect = 2e-106 Identities = 332/390 (85%), Gaps = 16/390 (4%) Strand=Plus/Plus Query 126 TACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGA-TGGAACAAT 184 ||||||||||||| |||| | |||||||| |||||||||||||||| | | ||||||| Sbjct 669 TACTCATACTCGTGGCCTCGCGATTTACAAGGGAGATCGGTTTTCAG-CATTAGAACAAT 727 Query 185 GCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGGGGATG 244 ||| || ||| || |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 728 GCACAATAACCAGAGAGATTGAGATTTGGGTGACAACGAATAAAATTGGTAATGGGGATG 787 Query 245 ATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC-CATG 303 ||||| || |||| |||||||| |||||||||||||||||||||||||||||||| | || Sbjct 788 ATGGAGACAATGTGGTGTGGATCAAGTTCATGACTGTCTCAATACCTAACTTCCCAC-TG 846 Query 304 GTACTTTGTCATAA--T-TCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGAGC 360 || | |||| || | ||| ||||||||||||||||| ||| ||||| ||| |||||| Sbjct 847 GTTC---GTCACAACATGTCTTCAAGTTACTTCGTCGATAATAATATCTATGGAAAGAGC 903 Query 361 TTCGTTTTATGTTTTTCT-ACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGAGGGG 419 |||||| | |||| | || | | ||||||||||||||||||| |||||||||||||||| Sbjct 904 TTCGTTATGTGTTAT-CTTAACGTGAAACCTAAACAAGCTTGGATCTATATTGTGAGGGG 962 Query 420 AGATCTGTGCAAAAAGATTAAGATAGATGAAGTTG-TATGT-ACGTTCCAATCCTGTGCC 477 |||| ||||||||||||||||| | |||||||| | ||||| | ||| ||||| || Sbjct 963 AGATGTGTGCAAAAAGATTAAGGTTGATGAAGT-GCTATGTGA-GTTTTTATCCTATGTT 1020 Query 478 TATGTTCCCAGTTTGATCTCCATTCCTTGA 507 |||||||| ||||||||| ||||| ||||| Sbjct 1021 TATGTTCCTAGTTTGATCACCATTTCTTGA 1050 > Ahg925246 jgi|Araly1|925246|scaffold_200807.1 Length=1149 Score = 303 bits (164), Expect = 6e-82 Identities = 364/457 (80%), Gaps = 27/457 (6%) Strand=Plus/Plus Query 1 ATGGAAATTTGTACTGGACAGCTTATAATTCCAAAACTGGTCAGTATTTCATCCA-AATG 59 |||||||||||| | |||||||||| ||| | |||||||||||||| |||| || ||| Sbjct 619 ATGGAAATTTGTTTTCGACAGCTTATGATTTCGAAACTGGTCAGTATATCAT-CAGAAT- 676 Query 60 GC-TCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGA 118 | |||||||||||||||||| | | ||| || ||||||||||| ||| | |||| Sbjct 677 -CTTCGATTTTTCCAAAGAGATAGTGAAGCCCTTTTGTATTCTACCGTGT---GAGAAG- 731 Query 119 AAAG-TAC-TACTCATACTCGTATCCTCT-CTATTTACAAAGGAGATCGGTTTTCAG-TG 174 |||| | | || || |||| | ||| | | ||||||| |||||||| ||||| | || Sbjct 732 AAAGATTCAAAC-CAAACTCATGCCCT-TGCGGTTTACAAGGGAGATCGATTTTC-GTTG 788 Query 175 ATGGAACAATGC-AAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGG 233 | ||||||||| | || ||| || |||||||||||||||| |||||||| |||||| | Sbjct 789 TTAGAACAATGCTATAA-AACGAGCAAGATTGAGATTTGGGTTACAAAGAAGAAAATTAG 847 Query 234 TAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAA 293 |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| Sbjct 848 TAATGGGGATGATGGAGACAATGTGGTGTGGATTAAGTTCATGACTGTCTCAATACCTAA 907 Query 294 CTTCCCCATGGTACTTTGTCATAA-TTCTACAAGTTACTTCGTCGATGATAGTATCTCTG 352 |||||||| ||| ||| ||| | || | | || ||| | |||||| ||| ||||| || Sbjct 908 CTTCCCCA-GGT--TTTATCACACGTTTT-CGAGATACATGGTCGATAATAATATCTGTG 963 Query 353 GGAAGAGCTTCGTTTTATGTTTTTCT-ACCA-AGAAACCTAAACAAGCTTGGGTCTATAT 410 | |||| |||||| | |||| | | | | | |||| || || |||||||||||| | Sbjct 964 GAAAGACCTTCGTCATGTGTTGTCCCGATGACA-AAAC-TAGACGGGCTTGGGTCTATGT 1021 Query 411 TGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGAT 447 ||||||||||||||| ||||| |||||||| |||||| Sbjct 1022 TGTGAGGGGAGATCTTTGCAAGAAGATTAAAATAGAT 1058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18429149487 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5