BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53330.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923882 jgi|Araly1|923882|scaffold_105163.1 2141 0.0
> Ahg923882 jgi|Araly1|923882|scaffold_105163.1
Length=1459
Score = 2141 bits (1159), Expect = 0.0
Identities = 1334/1420 (94%), Gaps = 5/1420 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGCCGTGAAATCTGTCTCTTCCTTCAGGCTCGCCTCTCTCCTCCGCCGTGAGAAT 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 21 ATGTCCGCCGTGAAATCTGTCTCTTCCTTCAGGCTCGCTTCTCTCCTCCGACGTGAGAAT 80
Query 61 GATCCTTCCGCCGCCATGAAGCTTTTCCGAAACCCTGATCCAGAATCAACGAACCCAAAA 120
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 81 GATCCTTCCGCCGCAATTAAGCTTTTCCGAAACCCTGATCCAGAATCAACGAACCCGAAA 140
Query 121 AGGCCCTTCAGATACTCGCTTCTTTGCTACGATATCATCATCACGAAACTTGGTGGCTCC 180
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CGACCCTTTAGATACTCGCTTCTTTGCTACGATATCATCATCACGAAACTTGGTGGCTCC 200
Query 181 AAGATGTTTGACGAGCTAGATCAGGTACTTCTCCACCTCAAGACCGATACTCGTATCGTT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 201 AAGATGTTTGACGAGCTAGATCAGGTACTTCTCCAGCTCAAGACCGATACTCGGATCGTT 260
Query 241 CCTACAGAGATTATATTTTGCAATGTGATCAATTTCTTTGGCCGTGGAAAATTACCCAGT 300
|||||||||||| | || |||||||| ||||||||||| || ||||||| |||||| |||
Sbjct 261 CCTACAGAGATTCTGTTCTGCAATGTAATCAATTTCTTCGGTCGTGGAAGATTACCTAGT 320
Query 301 CGTGCACTCCACATGTTCGACGAAATGCCTCAATACCGTTGCCAACGCACTGTGAAATCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CGTGCACTCCACATGTTCGACGAAATGCCTCAATACCGTTGCCAACGCACTGTGAAATCC 380
Query 361 TTGAACTCTCTGTTGAGTGCGCTT-TTAAAGTGCGGTGAGTTGGAGAAAATGAAGGAACG 419
|||||||||| |||| | ||| || |||||||||||||| |||||||||||||||||
Sbjct 381 CTGAACTCTCTCTTGAACACACTTCTT-AAGTGCGGTGAGTTTGAGAAAATGAAGGAACG 439
Query 420 TCTTTCGAGTATTGATGAGTTTGGTAAGCCTGACGCTTGTACTTACAATATACTGATCCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCTTTCGAGTATTGATGAGTTTGGTAAGCCTGACGCTTGTACTTACAATATACTGATCCA 499
Query 480 TGGATGTTCTCAGAGCGGGTGTTTCGATGATGCCTTGAAGCTATTCGATGAAATGGTCAA 539
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 500 TGGATGTTCTCAGAGAGGGTGTTTCGATGATGCTTTGAAGCTATTCGATGAAATGGTCAA 559
Query 540 GAAAAAAGTGAAGCCCACTGGTGTTACCTTTGGGACGTTGATTCACGGGTTGTGCAAGGA 599
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 560 GAAAAAAGTGAAGCCCACTGGAGTTACCTTTGGGACGTTGATTCACGGGTTGTGCAAGAA 619
Query 600 TTCGAGGGTGAAGGAAGCACTGAAGATGAAGCACGATATGTTAAAAGTGTATGGAGTGCG 659
|| ||||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||
Sbjct 620 TTTGAGGGTGAAAGAAGCATTGAAGATGAAGCAAGATATGTTGAAAGTGTATGGAGTACG 679
Query 660 TCCCACGGTACACATTTATGCGTCGTTGATTAAAGCGCTTTGTCAAATTGGTGAATTGAG 719
||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 680 TCCCACGGTTCACATTTATGCGTCATTGGTCAAAGCGCTTTGTCAAATTGGTGAATTGAG 739
Query 720 TTTTGCGTTTAAGCTTAAGGATGAGGCGTACGAAGGAAAGATTAAAGTAGACGCAGCTAT 779
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 740 TTTTGCGTTTAAGCTAAAGGATGAGGCGTACGAAGGAAAGATTAAAGTAGACTCAGCTAT 799
Query 780 ATACTCTACGTTGATTAGCTCACTTATAAAAGCTGGAAGGTCGAATGAGGTATCGATGAT 839
||||||||||||||||||||| ||||||||||||||||| || || |||||||||| |||
Sbjct 800 ATACTCTACGTTGATTAGCTCGCTTATAAAAGCTGGAAGATCAAACGAGGTATCGAGGAT 859
Query 840 TTTGGAAGAAATGAGTGAAAAAGGATGCAAACCTGATACAGTGACTTACAATGTACTAAT 899
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 860 CTTGGAAGAAATGAGTGAAAAAGGATGCAAACCCGACACAGTGACTTACAATGTACTGAT 919
Query 900 TAACGGGTTCTGTGTTGAGAATGATTCCGAATCAGCTAATCGAGTCTTGGATGAAATGGT 959
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 920 TAACGGGTTCTGTGTTGAGAATGATTCGGAATCAGCTTATCGAGTCTTGGATGAAATGGT 979
Query 960 TGAAAAGGGCTTGAAACCAGATGTTATAAGCTACAACATGATACTTGGTGTCTTTTTTAG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 980 TGAAAAGGGCTTGAAACCAGATGTTATAAGCTACAACATGATACTTGGTGTCTTGTTTAG 1039
Query 1020 AATCAAAAAATGGGAAGAAGCTACTTACTTGTTTGAAGATATGCCCAGAAGAGGTTGCAG 1079
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AATCCAAAAATGGGAAGAAGCAACTTACTTGTTTGAAGATATGCCCAGAAGAGGTTGCAG 1099
Query 1080 CCCTGATACCTTATCGTATAGGATAGTTTTCGATGGGCTTTGCGAAGGTTTACAATTCGA 1139
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1100 CCCTGATACCTTATCTTATAGAATAGTTTTCGATGGACTTTGCGAAGGTTTACAATTTGA 1159
Query 1140 AGAAGCTGCAGTTATCTTAGACGAAATGCTTTTCAAAGGTTATAAGCCTCGCAGGGATAG 1199
||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1160 AGAAGCTGCGGCTATCTTGGACGAAATGCTTTTCAAAGGTTATAAGCCTCGCAGGGACAG 1219
Query 1200 GCTAGAGGGATTTCTGCAAAAGCTATGTGAGAGTGGAAAGTTGGAGATTCTGAGTAAAGT 1259
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1220 GCTAGAGAGATTTCTGCAAAAGCTATGTGAAAGTGGAAAGTTGGAGATTCTAAGTAAAGT 1279
Query 1260 TATTAGTAGCTTGCATAGAGGGATTGCTGGTGATGCAGATGTGTGGTCGGTTATGATACC 1319
||| ||||| ||||||||||||| ||||| ||||||| | || |||||||||||||||||
Sbjct 1280 TATCAGTAGTTTGCATAGAGGGAATGCTGATGATGCAAAGGTATGGTCGGTTATGATACC 1339
Query 1320 TACAA---TGTGCAAAGAACCCGTGATATCGGATTCTATTGATTTGTTGTTGAACACAGT 1376
||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1340 TACAACAATGTGCAAAGAACCCGTGATATCGGCGTCTCTTGATTTGTTGTTGAACACAGA 1399
Query 1377 AAAGGAAGATGGTCCTTTATCAGCAATGCCACAATGCTAG 1416
|||||||||||||||||||||||||||||| | ||||||
Sbjct 1400 AAAGGAAGATGGTCCTTTATCAGCAATGCCGCCGTGCTAG 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5