BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53345.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314659 jgi|Araly1|314659|fgenesh1_pm.C_scaffold_1003439 1526 0.0
> Ahg314659 jgi|Araly1|314659|fgenesh1_pm.C_scaffold_1003439
Length=1017
Score = 1526 bits (826), Expect = 0.0
Identities = 938/992 (95%), Gaps = 7/992 (1%)
Strand=Plus/Plus
Query 81 GAAGAAGATGGCTGTGCTTTACCATTATCCTTGCCATGACGGTGTTTTCGCAGCTTTAGC 140
||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 30 GAAGAAGTTGGCTGTTCTTTACCATTATCCTTGCCATGACGGTGTTTTCGCCGCTTTAGC 89
Query 141 TGCTCATCTCTACTTCTCAGCAAAGTCAATCCCTTCACTGTTCTTCCCCAACACAGTCTA 200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 90 TGCTCATCTCTACTTCTCAGCAAAGTCAATCCCTTCATTGTTCTTCCCCAACACAGTCTA 149
Query 201 CTCTCCAATCACAATCAACCAACTTCCACTTCAAGACATCAGTCATCTCTATCTTTTTGA 260
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 150 TTCTCCAATCACAATCAACCAACTTCCACTTCAAGAAATCAGTCATCTTTATCTTCTTGA 209
Query 261 TTTCACTGGACCTCCAGGTTTCGTTCACCAAGTCTCTCCTAAAGTCGACAATGTCGTGAT 320
||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 210 TTTCACTGGACCTCCTGGTTTTGTTTACCAAGTCTCTCCTAAAGTCGACAATGTGGTGAT 269
Query 321 CCTCGATCACCATAAAACCGCTATTGATAGCT-TAGGTGATGTCTCTTTGACTTGCAAGA 379
||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 270 CCTCGATCATCATAAAACCGCTATTGAGAG-TCTAGGTGATGTCTCTTTGACTTGCAAGA 328
Query 380 ACGTTACTAGTGTTTTGGATATAGAGAGAAGTGGTGCGACTATTGCGTTTGACTATTTTA 439
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 329 ACGTTACTAGTGTTTTGGATATAGAGAGAAGTGGTGCGACTATTGCGTTTGATTATTTTA 388
Query 440 CTCAGAAGTTGGTTGAAGAAAGTAGAGGAAGTTGCAAAGAGATGAATGATTTCAAGAGAA 499
|||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 389 CTCAGAAGTTGGTTGAAGAATGTAGAGGAAGTTGCAAGGAGATGAATGATTTTAAGAGAA 448
Query 500 TGAGACGTGTTTTCGAGTATATTGAAGACGCGGATATATGGAAGTGGGAGTTACCAGAGA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TGAGACGTGTTTTCGAGTATATTGAAGACGCGGATATATGGAAGTGGGAGTTACCAGAGA 508
Query 560 GCAAAGC-TTTCAACAGTGGAATATTGGACTTAAAGATTGAATACGACTTCAATAAGAAC 618
| ||||| ||| ||||||||||| |||||||| ||||||||||||||||| ||| ||||
Sbjct 509 GTAAAGCATTT-AACAGTGGAATCTTGGACTTGAAGATTGAATACGACTTTAATCAGAAT 567
Query 619 CAATCTTTGTTTGATCAGCTACTCTCATTGGATCATGAAAGTGTGATCAACAGAGGAAAA 678
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 568 CAATCATTGTTTGATCAGCTACTCTCTTTGGATCATGAAAGTGTGATCAACAGAGGAAAA 627
Query 679 CAGAGTTTGTCCAAGAAACATAAACTGATTCACGAGGTGTTGGAACAGTCATATGAGATT 738
||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 628 CAGAGTTTGTCTAAGAAACATAAACGGATTCACGAGGCGTTGGAAAAGTCATATGAGATT 687
Query 739 GTTCTTGGAGGTGATGAGGAGTTTGGACGGTGTTTAGCTGTAAATGCTGATGAGATTACA 798
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 688 GTTCTTGGAGGTGACGAAGAGTTTGGACGGTGTTTAGCTGTAAATGCAGATGAGATTGCA 747
Query 799 GAGCTTAGAAGCGAGTTAGGGAATCAATTGGCTG-AGAAGAGTAAGAATCTGAGTTTACG 857
| |||||||||||| ||||| ||||||||||||| | ||||| |||||||||| ||||||
Sbjct 748 GTGCTTAGAAGCGAATTAGGTAATCAATTGGCTGCA-AAGAGCAAGAATCTGAATTTACG 806
Query 858 AGGTGTTGGAGCTGTTGTTTACAGAGTTCCTGAGCTTGGAGATGAGAATAAACTGAAAAT 917
|||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 807 AGGTATTGGAGCTGTTGTTTACAGAGTTCCTGAGCTTGGGGATGAAAACAAACTGAAAAT 866
Query 918 AAGTTTGAGGAGTGTTGCAGAAGAAGACACAACACCGGTTTCACAGCGATTCGGAGGTGG 977
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 867 AAGTTTGAGGAGTGTTGCAGAAGAAGACACAACACCGGTTTCTCAGAGATTCGGAGGTGG 926
Query 978 TGGTCATAAAAACGCAAGCTCCTTCTTGTTAAACTCCATGGAGTTCGAGCAATGGAAGGT 1037
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 927 TGGTCATAAAAACGCAAGCTCCTTCTTGTTAAACTCCATGGAGTTCGAACAATGGAAGGT 986
Query 1038 GAAATAGAAACTCTTCTACTACATTAAACTAG 1069
||| |||||||||||||| |||||||||||||
Sbjct 987 GAA-TAGAAACTCTTCTAATACATTAAACTAG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5