BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53360.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923885 jgi|Araly1|923885|scaffold_105166.1 761 0.0
Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063 588 3e-167
Ahg337546 jgi|Araly1|337546|fgenesh1_pg.C_scaffold_1004111 527 7e-149
> Ahg923885 jgi|Araly1|923885|scaffold_105166.1
Length=1024
Score = 761 bits (412), Expect = 0.0
Identities = 623/721 (86%), Gaps = 29/721 (4%)
Strand=Plus/Plus
Query 1 ATGTTTTCTAGAGTCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATT 60
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTTCTCTAGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATA 80
Query 61 CATCGTCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTATGTCTCGTCCACGGCTC 120
| | ||| || ||||||||| ||||||| ||| ||||||||| |||||| ||||||||||
Sbjct 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGTGTCTCATCCACGGCTC 140
Query 121 TTGTTTGCCTTGGAAGT-TAAT-AAAGATTTATTGTTTTTCTCTTCACCTCAACCTCAAA 178
|||||| |||||||| | || | ||| | || ||| ||||||||||||||||||||||||
Sbjct 141 TTGTTTTCCTTGGAA-TATACTGAAA-AGTTCTTGGTTTTCTCTTCACCTCAACCTCAAA 198
Query 179 ATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTTGC 238
| ||| |||| ||||||||||||||||||||||| |||||| ||||||| |||||||| |
Sbjct 199 AACCAGATGAGAACTCTTCTCTTGTAGCCACCCCTTATAAGTGTTTTCCCAAATATTTTC 258
Query 239 CAACCAGAATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAA-ATGGCTAAGaaaa 297
|||||||| | | ||| | || ||||||||||| ||||||||||| ||| |||||||
Sbjct 259 CAACCAGAGTATCTACCGCCCTAGGTGGATTGGTATTCCTTCAGAATTTGG-GAAGAAAA 317
Query 298 aaaaCGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGTGAA 356
||| |||||||||| || ||||| |||| | ||||| | |||||||||||||||||||||
Sbjct 318 AAACCGCGGGTGATATGCAACCCCGTCACG-GGAGAGTCTATAACCTTACCCAAAGTGAA 376
Query 357 AGCCACTGGTGTTGGAGA-AAGCTATTTTGGCTTTGATCCGATCACCAAACAGTTCAAAG 415
| | |||||||||||||| || |||||||||||||||||| |||| ||||||||| || |
Sbjct 377 AACGACTGGTGTTGGAGATAA-CTATTTTGGCTTTGATCCCATCAGCAAACAGTTTAAGG 435
Query 416 TGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACCAGG-TTTTGACATTG 474
||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 436 TGTTGTGTATGACTTGGTCACGTTATGGAACACCCAATACTCATC-GGATTTTGACATTG 494
Query 475 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATA-CTTCCCCATTAT-CGTA 532
||||||||||||||||||||||||||||||||||| ||| || || ||||||||| | |
Sbjct 495 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTATCT-CCCCATTATTCTTG 553
Query 533 GTTTTGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGAAGAATCTC 592
|| | ||| |||||||||||||||| |||||||| |||| |||| |||| |||||||||
Sbjct 554 GTAT-GATGGAATATGCATAAATGGCGTTTTGTATTACGTAGCTTTTTTTAAAGAATCTC 612
Query 593 -A--ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTATTAACA 649
| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |
Sbjct 613 GACGATCTTATAAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCAGCTTTATTAA-A 671
Query 650 T-AGCTGATGAAGGCATGTTCCGTGG-GAGTTATAAATGGACTTTGTTCAACTACAAAGG 707
| || | | ||| |||| | ||||| ||| | | || ||||||||||||||||||||
Sbjct 672 TTAGAT-A--AAGACATGGTACGTGGTGAG--A-AGTTG-ACTTTGTTCAACTACAAAGG 724
Query 708 T 708
|
Sbjct 725 T 725
> Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063
Length=1488
Score = 588 bits (318), Expect = 3e-167
Identities = 828/1060 (78%), Gaps = 91/1060 (9%)
Strand=Plus/Plus
Query 10 AGAG-TCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCAT-----TC-A 62
|||| |||| |||| |||||||||||||||||||||||||||| ||| || || |
Sbjct 115 AGAGTTCCC-GCAAGGTCTATAGCTAGGTTTCGTTGCGTATCGAAATT-ATGGGAATCCA 172
Query 63 T-C--G-TCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTAT-GTCTCGTCCACGG 117
| | | | |||||||| ||||||||| || ||||||||||||| | | |||||||||||
Sbjct 173 TACTAGGTAGTCCTGATTTCACAGAGCTGTTCCTGACTAAGTCTGTAG-CTCGTCCACGG 231
Query 118 CTCTTGTTTGCCTTGGAAGTTAATAAAGATTTATT-GTTTTTCTCTTCACCTCAACCTCA 176
||||||||||| ||||||||| |||||| ||||| || ||| |||||||||||||||||
Sbjct 232 CTCTTGTTTGCTTTGGAAGTTGGTAAAGAGTTATTCGTCTTT-TCTTCACCTCAACCTCA 290
Query 177 AAATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTT 236
||||||| |||| ||||| ||||||||||||||||| |||||| |||||| ||| ||||
Sbjct 291 AAATCCAGATGAGAACTCGTCTCTTGTAGCCACCCCTTATAAGTATTTTCCCAAAGATTT 350
Query 237 GCCAACCAGA-ATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAAATGGCTAAGaa 295
|||| || | || ||| | ||||| ||||||||| || |||||| | | | || |
Sbjct 351 TCCAATCA-ATATATGTCCCCCGCTCAATGGATTGGTATTTCTTCAGGATTTG--AA-AC 406
Query 296 aaaaaaC-GCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGT 353
|||| | || |||| ||| |||||| || | | ||||| | |||||||||||| ||||
Sbjct 407 GAAAA-CTGCAGGTGGTTTATAACCCCGTTACG-GGAGAGTCCATAACCTTACCCGAAGT 464
Query 354 GAAAGCCACTG---GTGTTGGA-GAAAGCTATTTTGGCTTTGATCCGATCACCAAACAGT 409
|| ||| ||| || || | ||| |||||||| | ||||||||||||| |||| |||
Sbjct 465 GACAGCAACTACAAGTTTTAAAAGAA-GCTATTTTAGTTTTGATCCGATCAGCAAAAAGT 523
Query 410 TCAAAGTGTTGTGTATG-ACGTGGTCACGTTATGGAACACCCAA-TACTCACC-AGGTTT 466
||||| |||| |||| | ||||||||| ||||||||||||| | || || | ||||
Sbjct 524 GGAAAGTCTTGTATATGGAA-TGGTCACGTGATGGAACACCCAAAT-CT-ACTTACGTTT 580
Query 467 TGACATTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATACTTCCCCATT 526
|||||||| ||||||||||| |||||||||||| ||||||||| ||| || ||||||||
Sbjct 581 TGACATTGAAGACTGGAAAATGTTTATGGAGGAAGATCCAAGACCCAGTATTTCCCCAT- 639
Query 527 A-TCGTAGTTTTGATAGAA-TATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGA 584
| || ||| | |||| ||| ||||||||||||| |||||||| ||||||||| | |
Sbjct 640 ACTCCTAGATGTGAT-GAAATATGCATAAATGGAGTTTTGTATTACGGAGCTTCCGCTAA 698
Query 585 AGAATCTCA-ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTA 643
|| || | | | || ||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 699 AGGATATTATAGCTA-TAAGATAGTATGCTTCGACTTTAGGTTTGAGAAATTCGGCCGTA 757
Query 644 TTAACATAGCTGATGAAGGCATGTTCCGTGGGAGTTATAAATGGACTTTGTTCAACTACA 703
|||| | || || ||| | | | | ||| ||||||||||| |||| ||
Sbjct 758 TTAA----G---AT-AA---ATG----GAG--A-TCATACGTGGACTTTGTTTAACTGCA 799
Query 704 AAGGTAAATTAGGTGCACATCA--ATA---TTCAAGAA-ACGGCGAACTTGTATTGTGGG 757
|||||||||||||||||||||| ||| || | ||| ||||| |||||||
Sbjct 800 AAGGTAAATTAGGTGCACATCAGTATAACCTTTGGGGTTACGAAAAACTTACGTTGTGGG 859
Query 758 TTCTT-GAAGATGCTG-AAAACCATAAATGGTCCAAAAGTATATGCATATTGCCA-CCTA 814
|| || |||||||||| ||||| || ||||||| || |||||||||||| ||||| || |
Sbjct 860 TT-TTAGAAGATGCTGGAAAAC-ATCAATGGTCTAAGAGTATATGCATACTGCCATCC-A 916
Query 815 TAGTCCACAACA-G--CAGGATTGTTGGAGTGACGGGTA-CGGGAGAGATTGTGTTTTCA 870
||||| |||| | | || |||||| ||| |||| ||| ||| |||| |||||||| |
Sbjct 917 TAGTCTACAAGAAGAACATGATTGTCGGAATGACTAGTAGCGG-AGAGCTTGTGTTTACG 975
Query 871 CCTTACGCGTGCTATATGCCCAGCCCTTTCTATATTTTCTTCTACAATATCCAGACGAAG 930
|| ||||| |||||| | | | | || ||| ||||||||||||| ||| ||||
Sbjct 976 CCATACGCATGCTATCTATCAAAC-------AT-TTT-CTTCTACAATATCGAGAGGAAG 1026
Query 931 ACTTGTACAAGAGTGCA-TGTTAAGGGATTTGAAGAGTTTAAGCAT-AATTTCACTCTCC 988
|||| ||||||||| || | |||||||||||||||||||||| ||| ||||| ||| |
Sbjct 1027 ACTTATACAAGAGT-CAATATTAAGGGATTTGAAGAGTTTAACCATCAATTT-ACTTTGG 1084
Query 989 TTCACACTTTTCTAGACTTTGTTGAGGATACGAAGTTTAT 1028
||||||| |||||||||||||| ||| ||| || |||||
Sbjct 1085 TTCACACCTTTCTAGACTTTGTAGAGAATATTAACTTTAT 1124
> Ahg337546 jgi|Araly1|337546|fgenesh1_pg.C_scaffold_1004111
Length=744
Score = 527 bits (285), Expect = 7e-149
Identities = 551/674 (82%), Gaps = 40/674 (6%)
Strand=Plus/Plus
Query 282 GAAATGGCTAAGaaaaaaaaCGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAA 340
||| |||| ||||| |||| ||||||||||||||||||| ||| | ||| | | || ||
Sbjct 69 GAATTGGCGAAGAATAAAAGCGCGGGTGATTTGTAACCCCCTCACGGGGA-AGTCTAAAA 127
Query 341 CCTTACCCAAAGTGAAAGCCACTGGTGTTGGAGAAAGCTATTTTGGCTTTGATCCGATCA 400
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 128 CCTTACCCAAAGTGAAAGCCACCGGTGTTGGAGAAAGCTATTTTGGCTTTGATCCGATCA 187
Query 401 CCAAACAGTTCAAAGTGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACC 460
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 188 GCAAACAGTTCAAAGTGTTGTGTATGACATGGTCACGTTATGGAATACCCAATACTCATC 247
Query 461 AGG-TTTTGACATTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATACTT 519
| |||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 248 -GTATTTTGACACTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTA-TT 305
Query 520 -CCCCATTATCGTAGTTT-TGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTG 577
||||||| | || | |||| ||||||||||||||||||||||||| |||| ||||
Sbjct 306 ACCCCATTTTTATA-TAGGTGATGGAATATGCATAAATGGTGTTTTGTATTACGAAGCTT 364
Query 578 ATTTTGAAGAATCTCAATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCA 637
|||| ||||||||| ||||| | ||||||||||||||||||||| | ||||||||||||
Sbjct 365 CTTTTAAAGAATCTCGATCTTATGAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCA 424
Query 638 GCTTTATTAACAT-AGCTGATGAAGGCATGTTCCGTGGGAGTTATAAATGGACTTTGTTC 696
|||||||||| || || | | ||| |||| | ||||| | | || | |||||||||
Sbjct 425 GCTTTATTAA-ATTAGAT-A--AAGACATGGTACGTGGTA---AGAAGTTAACTTTGTTC 477
Query 697 AACTACAAAGGTAAATTAGGTGCACATCA--ATATTCAA-GAA--AC-GGCGAACTTGTA 750
||||||||||||||||||||||||||||| |||| | | || || || |||
Sbjct 478 AACTACAAAGGTAAATTAGGTGCACATCAGGATATCCGTTGGCGTACAGGAAAATTTGCG 537
Query 751 TTGTGGGTTCTTGAAGATGCTG-AAAACCATAAATGGTCCAAAAGTATATGCATATTGCC 809
||||||||||| |||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct 538 TTGTGGGTTCTAGAAGATGCTGGAAAAC-ATAAATGGTCCAAGCGTATATGCGCCCTGCC 596
Query 810 ACCTATA-GTC--CA-------CAACA-GCAG--GATTGTTGGAGTGACGGGTACGGGAG 856
|||| | | | || ||||| ||| ||| |||||| |||| | ||| || |
Sbjct 597 ACCTTTCTG-CGACAAAATAGTCAACACGCACATGATGGTTGGAATGACTGTTACCGGTG 655
Query 857 AGATTGTGTTTTCACCTTACGCGTGCTATATGCCCAG-CCCTTTCTATATTTTCTTCTAC 915
| ||||||| ||| || |||||| ||||| | | || ||||||| | ||||||| ||||
Sbjct 656 AAATTGTGTATTCGCCGTACGCGGGCTATCT-CTCAAACCCTTTCGACATTTTCTACTAC 714
Query 916 AATATCCAGACGAA 929
|||||| ||| |||
Sbjct 715 AATATCGAGAGGAA 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5