BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53360.1 Length=1032 Score E Sequences producing significant alignments: (Bits) Value Ahg923885 jgi|Araly1|923885|scaffold_105166.1 761 0.0 Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063 588 3e-167 Ahg337546 jgi|Araly1|337546|fgenesh1_pg.C_scaffold_1004111 527 7e-149 > Ahg923885 jgi|Araly1|923885|scaffold_105166.1 Length=1024 Score = 761 bits (412), Expect = 0.0 Identities = 623/721 (86%), Gaps = 29/721 (4%) Strand=Plus/Plus Query 1 ATGTTTTCTAGAGTCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATT 60 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGTTCTCTAGAGTCCCGGGAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCATA 80 Query 61 CATCGTCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTATGTCTCGTCCACGGCTC 120 | | ||| || ||||||||| ||||||| ||| ||||||||| |||||| |||||||||| Sbjct 81 CTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGTGTCTCATCCACGGCTC 140 Query 121 TTGTTTGCCTTGGAAGT-TAAT-AAAGATTTATTGTTTTTCTCTTCACCTCAACCTCAAA 178 |||||| |||||||| | || | ||| | || ||| |||||||||||||||||||||||| Sbjct 141 TTGTTTTCCTTGGAA-TATACTGAAA-AGTTCTTGGTTTTCTCTTCACCTCAACCTCAAA 198 Query 179 ATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTTGC 238 | ||| |||| ||||||||||||||||||||||| |||||| ||||||| |||||||| | Sbjct 199 AACCAGATGAGAACTCTTCTCTTGTAGCCACCCCTTATAAGTGTTTTCCCAAATATTTTC 258 Query 239 CAACCAGAATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAA-ATGGCTAAGaaaa 297 |||||||| | | ||| | || ||||||||||| ||||||||||| ||| ||||||| Sbjct 259 CAACCAGAGTATCTACCGCCCTAGGTGGATTGGTATTCCTTCAGAATTTGG-GAAGAAAA 317 Query 298 aaaaCGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGTGAA 356 ||| |||||||||| || ||||| |||| | ||||| | ||||||||||||||||||||| Sbjct 318 AAACCGCGGGTGATATGCAACCCCGTCACG-GGAGAGTCTATAACCTTACCCAAAGTGAA 376 Query 357 AGCCACTGGTGTTGGAGA-AAGCTATTTTGGCTTTGATCCGATCACCAAACAGTTCAAAG 415 | | |||||||||||||| || |||||||||||||||||| |||| ||||||||| || | Sbjct 377 AACGACTGGTGTTGGAGATAA-CTATTTTGGCTTTGATCCCATCAGCAAACAGTTTAAGG 435 Query 416 TGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACCAGG-TTTTGACATTG 474 ||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct 436 TGTTGTGTATGACTTGGTCACGTTATGGAACACCCAATACTCATC-GGATTTTGACATTG 494 Query 475 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATA-CTTCCCCATTAT-CGTA 532 ||||||||||||||||||||||||||||||||||| ||| || || ||||||||| | | Sbjct 495 GAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTATCT-CCCCATTATTCTTG 553 Query 533 GTTTTGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGAAGAATCTC 592 || | ||| |||||||||||||||| |||||||| |||| |||| |||| ||||||||| Sbjct 554 GTAT-GATGGAATATGCATAAATGGCGTTTTGTATTACGTAGCTTTTTTTAAAGAATCTC 612 Query 593 -A--ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTATTAACA 649 | ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 613 GACGATCTTATAAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCAGCTTTATTAA-A 671 Query 650 T-AGCTGATGAAGGCATGTTCCGTGG-GAGTTATAAATGGACTTTGTTCAACTACAAAGG 707 | || | | ||| |||| | ||||| ||| | | || |||||||||||||||||||| Sbjct 672 TTAGAT-A--AAGACATGGTACGTGGTGAG--A-AGTTG-ACTTTGTTCAACTACAAAGG 724 Query 708 T 708 | Sbjct 725 T 725 > Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063 Length=1488 Score = 588 bits (318), Expect = 3e-167 Identities = 828/1060 (78%), Gaps = 91/1060 (9%) Strand=Plus/Plus Query 10 AGAG-TCCCGGCAAAGTCTATAGCTAGGTTTCGTTGCGTATCGGAATCCAT-----TC-A 62 |||| |||| |||| |||||||||||||||||||||||||||| ||| || || | Sbjct 115 AGAGTTCCC-GCAAGGTCTATAGCTAGGTTTCGTTGCGTATCGAAATT-ATGGGAATCCA 172 Query 63 T-C--G-TCGTCCTGATGTCACAGAGCAGTCCCTGACTAAGTCTAT-GTCTCGTCCACGG 117 | | | | |||||||| ||||||||| || ||||||||||||| | | ||||||||||| Sbjct 173 TACTAGGTAGTCCTGATTTCACAGAGCTGTTCCTGACTAAGTCTGTAG-CTCGTCCACGG 231 Query 118 CTCTTGTTTGCCTTGGAAGTTAATAAAGATTTATT-GTTTTTCTCTTCACCTCAACCTCA 176 ||||||||||| ||||||||| |||||| ||||| || ||| ||||||||||||||||| Sbjct 232 CTCTTGTTTGCTTTGGAAGTTGGTAAAGAGTTATTCGTCTTT-TCTTCACCTCAACCTCA 290 Query 177 AAATCCATATGATAACTCTTCTCTTGTAGCCACCCCATATAAGCGTTTTCCGAAATATTT 236 ||||||| |||| ||||| ||||||||||||||||| |||||| |||||| ||| |||| Sbjct 291 AAATCCAGATGAGAACTCGTCTCTTGTAGCCACCCCTTATAAGTATTTTCCCAAAGATTT 350 Query 237 GCCAACCAGA-ATCTGTACAACGCTCGGTGGATTGGTCTTCCTTCAGAAATGGCTAAGaa 295 |||| || | || ||| | ||||| ||||||||| || |||||| | | | || | Sbjct 351 TCCAATCA-ATATATGTCCCCCGCTCAATGGATTGGTATTTCTTCAGGATTTG--AA-AC 406 Query 296 aaaaaaC-GCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAACCTTACCCAAAGT 353 |||| | || |||| ||| |||||| || | | ||||| | |||||||||||| |||| Sbjct 407 GAAAA-CTGCAGGTGGTTTATAACCCCGTTACG-GGAGAGTCCATAACCTTACCCGAAGT 464 Query 354 GAAAGCCACTG---GTGTTGGA-GAAAGCTATTTTGGCTTTGATCCGATCACCAAACAGT 409 || ||| ||| || || | ||| |||||||| | ||||||||||||| |||| ||| Sbjct 465 GACAGCAACTACAAGTTTTAAAAGAA-GCTATTTTAGTTTTGATCCGATCAGCAAAAAGT 523 Query 410 TCAAAGTGTTGTGTATG-ACGTGGTCACGTTATGGAACACCCAA-TACTCACC-AGGTTT 466 ||||| |||| |||| | ||||||||| ||||||||||||| | || || | |||| Sbjct 524 GGAAAGTCTTGTATATGGAA-TGGTCACGTGATGGAACACCCAAAT-CT-ACTTACGTTT 580 Query 467 TGACATTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATACTTCCCCATT 526 |||||||| ||||||||||| |||||||||||| ||||||||| ||| || |||||||| Sbjct 581 TGACATTGAAGACTGGAAAATGTTTATGGAGGAAGATCCAAGACCCAGTATTTCCCCAT- 639 Query 527 A-TCGTAGTTTTGATAGAA-TATGCATAAATGGTGTTTTGTACTACGGAGCTGATTTTGA 584 | || ||| | |||| ||| ||||||||||||| |||||||| ||||||||| | | Sbjct 640 ACTCCTAGATGTGAT-GAAATATGCATAAATGGAGTTTTGTATTACGGAGCTTCCGCTAA 698 Query 585 AGAATCTCA-ATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCAGCTTTA 643 || || | | | || ||||||||| ||||||||||||||||||||||||||| || || Sbjct 699 AGGATATTATAGCTA-TAAGATAGTATGCTTCGACTTTAGGTTTGAGAAATTCGGCCGTA 757 Query 644 TTAACATAGCTGATGAAGGCATGTTCCGTGGGAGTTATAAATGGACTTTGTTCAACTACA 703 |||| | || || ||| | | | | ||| ||||||||||| |||| || Sbjct 758 TTAA----G---AT-AA---ATG----GAG--A-TCATACGTGGACTTTGTTTAACTGCA 799 Query 704 AAGGTAAATTAGGTGCACATCA--ATA---TTCAAGAA-ACGGCGAACTTGTATTGTGGG 757 |||||||||||||||||||||| ||| || | ||| ||||| ||||||| Sbjct 800 AAGGTAAATTAGGTGCACATCAGTATAACCTTTGGGGTTACGAAAAACTTACGTTGTGGG 859 Query 758 TTCTT-GAAGATGCTG-AAAACCATAAATGGTCCAAAAGTATATGCATATTGCCA-CCTA 814 || || |||||||||| ||||| || ||||||| || |||||||||||| ||||| || | Sbjct 860 TT-TTAGAAGATGCTGGAAAAC-ATCAATGGTCTAAGAGTATATGCATACTGCCATCC-A 916 Query 815 TAGTCCACAACA-G--CAGGATTGTTGGAGTGACGGGTA-CGGGAGAGATTGTGTTTTCA 870 ||||| |||| | | || |||||| ||| |||| ||| ||| |||| |||||||| | Sbjct 917 TAGTCTACAAGAAGAACATGATTGTCGGAATGACTAGTAGCGG-AGAGCTTGTGTTTACG 975 Query 871 CCTTACGCGTGCTATATGCCCAGCCCTTTCTATATTTTCTTCTACAATATCCAGACGAAG 930 || ||||| |||||| | | | | || ||| ||||||||||||| ||| |||| Sbjct 976 CCATACGCATGCTATCTATCAAAC-------AT-TTT-CTTCTACAATATCGAGAGGAAG 1026 Query 931 ACTTGTACAAGAGTGCA-TGTTAAGGGATTTGAAGAGTTTAAGCAT-AATTTCACTCTCC 988 |||| ||||||||| || | |||||||||||||||||||||| ||| ||||| ||| | Sbjct 1027 ACTTATACAAGAGT-CAATATTAAGGGATTTGAAGAGTTTAACCATCAATTT-ACTTTGG 1084 Query 989 TTCACACTTTTCTAGACTTTGTTGAGGATACGAAGTTTAT 1028 ||||||| |||||||||||||| ||| ||| || ||||| Sbjct 1085 TTCACACCTTTCTAGACTTTGTAGAGAATATTAACTTTAT 1124 > Ahg337546 jgi|Araly1|337546|fgenesh1_pg.C_scaffold_1004111 Length=744 Score = 527 bits (285), Expect = 7e-149 Identities = 551/674 (82%), Gaps = 40/674 (6%) Strand=Plus/Plus Query 282 GAAATGGCTAAGaaaaaaaaCGCGGGTGATTTGTAACCCTGTCA-GTGGAGATTATATAA 340 ||| |||| ||||| |||| ||||||||||||||||||| ||| | ||| | | || || Sbjct 69 GAATTGGCGAAGAATAAAAGCGCGGGTGATTTGTAACCCCCTCACGGGGA-AGTCTAAAA 127 Query 341 CCTTACCCAAAGTGAAAGCCACTGGTGTTGGAGAAAGCTATTTTGGCTTTGATCCGATCA 400 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 128 CCTTACCCAAAGTGAAAGCCACCGGTGTTGGAGAAAGCTATTTTGGCTTTGATCCGATCA 187 Query 401 CCAAACAGTTCAAAGTGTTGTGTATGACGTGGTCACGTTATGGAACACCCAATACTCACC 460 ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | Sbjct 188 GCAAACAGTTCAAAGTGTTGTGTATGACATGGTCACGTTATGGAATACCCAATACTCATC 247 Query 461 AGG-TTTTGACATTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGATCCAATACTT 519 | |||||||| ||||||||||||||||||||||||||||||||||||| ||| || || Sbjct 248 -GTATTTTGACACTGGAGACTGGAAAACGTTTATGGAGGACGATCCAAGACCCAGTA-TT 305 Query 520 -CCCCATTATCGTAGTTT-TGATAGAATATGCATAAATGGTGTTTTGTACTACGGAGCTG 577 ||||||| | || | |||| ||||||||||||||||||||||||| |||| |||| Sbjct 306 ACCCCATTTTTATA-TAGGTGATGGAATATGCATAAATGGTGTTTTGTATTACGAAGCTT 364 Query 578 ATTTTGAAGAATCTCAATCTTCTAAGATAGTTTGCTTCGACTTTAGGTTTGAGAAATTCA 637 |||| ||||||||| ||||| | ||||||||||||||||||||| | |||||||||||| Sbjct 365 CTTTTAAAGAATCTCGATCTTATGAGATAGTTTGCTTCGACTTTAAGATTGAGAAATTCA 424 Query 638 GCTTTATTAACAT-AGCTGATGAAGGCATGTTCCGTGGGAGTTATAAATGGACTTTGTTC 696 |||||||||| || || | | ||| |||| | ||||| | | || | ||||||||| Sbjct 425 GCTTTATTAA-ATTAGAT-A--AAGACATGGTACGTGGTA---AGAAGTTAACTTTGTTC 477 Query 697 AACTACAAAGGTAAATTAGGTGCACATCA--ATATTCAA-GAA--AC-GGCGAACTTGTA 750 ||||||||||||||||||||||||||||| |||| | | || || || ||| Sbjct 478 AACTACAAAGGTAAATTAGGTGCACATCAGGATATCCGTTGGCGTACAGGAAAATTTGCG 537 Query 751 TTGTGGGTTCTTGAAGATGCTG-AAAACCATAAATGGTCCAAAAGTATATGCATATTGCC 809 ||||||||||| |||||||||| ||||| ||||||||||||| |||||||| |||| Sbjct 538 TTGTGGGTTCTAGAAGATGCTGGAAAAC-ATAAATGGTCCAAGCGTATATGCGCCCTGCC 596 Query 810 ACCTATA-GTC--CA-------CAACA-GCAG--GATTGTTGGAGTGACGGGTACGGGAG 856 |||| | | | || ||||| ||| ||| |||||| |||| | ||| || | Sbjct 597 ACCTTTCTG-CGACAAAATAGTCAACACGCACATGATGGTTGGAATGACTGTTACCGGTG 655 Query 857 AGATTGTGTTTTCACCTTACGCGTGCTATATGCCCAG-CCCTTTCTATATTTTCTTCTAC 915 | ||||||| ||| || |||||| ||||| | | || ||||||| | ||||||| |||| Sbjct 656 AAATTGTGTATTCGCCGTACGCGGGCTATCT-CTCAAACCCTTTCGACATTTTCTACTAC 714 Query 916 AATATCCAGACGAA 929 |||||| ||| ||| Sbjct 715 AATATCGAGAGGAA 728 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38389777419 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5