BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53370.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063 313 2e-84
Ahg924089 jgi|Araly1|924089|scaffold_105370.1 237 1e-61
Ahg923885 jgi|Araly1|923885|scaffold_105166.1 182 6e-45
> Ahg337498 jgi|Araly1|337498|fgenesh1_pg.C_scaffold_1004063
Length=1488
Score = 313 bits (169), Expect = 2e-84
Identities = 302/364 (83%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 4 GAAAAAC-TGAAGCAGCAGTTCTCAAAGGATCGT-TTGATCACACCATCGTCGAACTTGG 61
||||||| || ||||||| |||||| |||||| | |||||||||| ||| || ||| ||
Sbjct 3 GAAAAACGTGGAGCAGCATTTCTCAGAGGATC-TATTGATCACACAATCTTCCAACGCGG 61
Query 62 TAAGAAACTA--CATAGACTCAATCCCAGTTGATCTTCTTATTGATATATTATCGAGATT 119
||||||| || |||| || ||||||| |||| ||||||| |||||||| |||||| |
Sbjct 62 TAAGAAATTACTCATA-CCT-AATCCCATTTGAGATTCTTATCGATATATTCTCGAGAGT 119
Query 120 TCCCCCAAAATCTATAGCTAGGTTTTATTGCGTATCGAAATTATGGGAATCCATACTTCG 179
|||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 120 TCCCGCAAGGTCTATAGCTAGGTTTCGTTGCGTATCGAAATTATGGGAATCCATACTAGG 179
Query 180 TGGTCCTGATTTCACGGAGCTGTACCTGACTAAATCTGTAGCTCTTCGAAGGCTCTT-TT 238
| ||||||||||||| ||||||| ||||||||| |||||||||| || | ||||||| ||
Sbjct 180 TAGTCCTGATTTCACAGAGCTGTTCCTGACTAAGTCTGTAGCTCGTCCACGGCTCTTGTT 239
Query 239 TCGCCCTCAAAGTTAATACAGAGTTATTGGT-TTTCTCTTCACCTCAACCTCAAATTCCA 297
| || | ||||| || ||||||||| || ||| ||||||||||||||||||| ||||
Sbjct 240 T-GCTTTGGAAGTTGGTAAAGAGTTATTCGTCTTT-TCTTCACCTCAACCTCAAAATCCA 297
Query 298 GATGAGAACTCTTCTCTTGTAGTTGAAGCCACTCCTTATAAGTGTTTTCCCaaaaaaaTT 357
||||||||||| |||||||||| |||| |||||||||| |||||||||| | ||
Sbjct 298 GATGAGAACTCGTCTCTTGTAG------CCACCCCTTATAAGTATTTTCCCAAAGATTTT 351
Query 358 CCAA 361
||||
Sbjct 352 CCAA 355
Score = 230 bits (124), Expect = 2e-59
Identities = 244/298 (82%), Gaps = 23/298 (8%)
Strand=Plus/Plus
Query 729 TTTGTTCAACTGCAAAGGTAAATTAGGTGTACATCAGTATG-A-CGTTCAGTCTAGA-AA 785
|||||||||||||||||||||||||||| ||||| | |||| | | || || |||| ||
Sbjct 1164 TTTGTTCAACTGCAAAGGTAAATTAGGTTTACATTACTATGCAGC-TTG-GTATAGACAA 1221
Query 786 CGAA-AA-A-CTTGTGTTCCATGTTCTAGAAGATGCTGAAAAACATAAATGGTCCAAAAG 842
||| || | |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1222 -GAAGAAGAACTTGTGTTGTATGTTCTAGAAGATGCTGGAAAACATAAATGGTCCAAAAG 1280
Query 843 TATATGCATATTGCCATCCG-TAGTCTC-CGGGAA-AAGGATTGTTGAAATTACTTGTAC 899
|||||||||| | ||| || ||||| | | || || ||||||| ||| ||||||||
Sbjct 1281 TATATGCATACTCCCA-CCTATAGTC-CACAACAACAAT-ATTGTTGGAATGACTTGTAC 1337
Query 900 GGGAGAGATTGTGTTTTCGCCAT-CCGGGGGCTCTCTAC-AC-C-CTTTCTACATTTTCT 955
|| |||||||||||||||||| | || | || ||||| | | |||||| ||||||||
Sbjct 1338 GG-AGAGATTGTGTTTTCGCCGTACCCATG-CTATCTACCAAGCACTTTCTGCATTTTCT 1395
Query 956 TCTACAATATCGAGAGAAAGACTTATACAAGAGTCCAA-ATCAAGGGATTTAAAAAGT 1012
||||||| || ||||| ||||||| |||||||||| || || ||||||||| || |||
Sbjct 1396 TCTACAACATGGAGAGGAAGACTTGTACAAGAGTC-AATATTAAGGGATTTGAAGAGT 1452
> Ahg924089 jgi|Araly1|924089|scaffold_105370.1
Length=1005
Score = 237 bits (128), Expect = 1e-61
Identities = 448/592 (76%), Gaps = 64/592 (11%)
Strand=Plus/Plus
Query 524 TTTTGACATTGGAGACTGGAGAACGTTTATGGCGGACGATCCACGACCCAGTA-AT-TCC 581
|||||| ||||||||||||| ||||| ||||| |||||||||| ||||||||| | ||
Sbjct 411 TTTTGATATTGGAGACTGGAAAACGTCTATGGAGGACGATCCAAGACCCAGTACCTAGCC 470
Query 582 ACGTTATTCTATTAATTATGATGCAATATGCATAAATGGTGTTTTGTATT-C-TGAAGCT 639
| || || ||| || |||| | ||||| |||||||||| ||||||||| | || | |
Sbjct 471 A--TTCTTTTATGGATGATGACGGAATATTCATAAATGGTATTTTGTATTACATG--GGT 526
Query 640 TATTATCAAGGATC--T-TCT-AAGATAGTTTGTTTTGACTTTAAGATTGAGAAAGTCAG 695
|||| | ||| || | | | ||||||||||| || ||||||| | |||||||| | |
Sbjct 527 TATTTTGGAGG-TCTATGTTTGAAGATAGTTTGCTTCGACTTTAGGCTTGAGAAATTTGG 585
Query 696 CTTTGTTAACATT-GAT---GGCATGTGC-AA-T-TT-GC--G-T---T-TGTTCAACTG 740
| ||||||| ||| ||| | || ||| || | || | | | | ||||||||||
Sbjct 586 CGTTGTTAA-ATTAGATAAAGACA--TGCAAATTATTCCCAAGTTAACTCTGTTCAACTG 642
Query 741 CAAAGGTAAATTAGGTGTACATCAG--TAT-GACGT-TCAGTCTAGAAACG-AAAAACTT 795
||||||||||||||| ||||||||| ||| | | | | || | | || | ||||| ||
Sbjct 643 CAAAGGTAAATTAGGAGTACATCAGCATATCGGCATGT-GGTGT-G-AA-GTAAAAAGTT 698
Query 796 GTG--TTCCATGTTCTAGAAGATGCTGAAAAACATAAATGGTCCAAAAGTATATGCATAT 853
|| || |||||||||||||||| | ||||||||||||||||| |||||| ||||
Sbjct 699 TTGCCTTGTGGGTTCTAGAAGATGCTGGAGAACATAAATGGTCCAAACGTATATTCATAC 758
Query 854 TGCCATCCGTAGTCTCCGG--GAAAAGGATTGTTGAAATTACTTGTACGGGAGAGATTGT 911
|||||||| ||| || || | | | |||||| ||| || |||| |||||||||||
Sbjct 759 TGCCATCCATAG--TCAGGTTCCAGATGTTTGTTGGAATGACAGGTACCGGAGAGATTGT 816
Query 912 GTTTTCGCCATCCGGGGGCTCTCTA-C--ACCCTTTCTACATTTTCTTCTACAATATCGA 968
||||||||||| | | ||| || | | |||||||||||||||||||||||||||||||
Sbjct 817 GTTTTCGCCATGCAAGAGCTTTCAACCAAACCCTTTCTACATTTTCTTCTACAATATCGA 876
Query 969 GAGAAAGACT-TATACAAGAGTCCAAAT-CAAGGGATTTAAAAAGTATG--C-TGATTG- 1022
||| || ||| | ||||||| |||| || || ||||||| || ||| || | | || |
Sbjct 877 GAGGAACACTGT-TACAAGAATCCATATTCA-GGGATTTGAAGAGTTTGAGCATCATCGA 934
Query 1023 -C----GTTCACACT-TTTCTAGACTTTGTAGAGGATACGAAGTTGATTTAA 1068
| ||||| ||| ||| || |||||||||||||| |||||| || |||
Sbjct 935 ACTTCTGTTCAGACTATTT-TAAACTTTGTAGAGGATGTGAAGTTTATCTAA 985
> Ahg923885 jgi|Araly1|923885|scaffold_105166.1
Length=1024
Score = 182 bits (98), Expect = 6e-45
Identities = 217/271 (80%), Gaps = 22/271 (8%)
Strand=Plus/Plus
Query 815 ATGCTGAAAAACATAAATGGTCCAAAAGTATATGCATATTGCCATCCGTAGT-CTCCGGG 873
|||||| ||||| || |||||||||||||||||||||| | ||| || || | |||
Sbjct 739 ATGCTGGAAAACGTATATGGTCCAAAAGTATATGCATACTCCCA-CC-TA-TAGTCC-AC 794
Query 874 AAAAG---GATTGTTGAAATTACTTGTACGGGAGAGATTGTGTTTTCGCCATCCGGGGGC 930
|| | |||||||| ||| || |||||||||| |||||||||||||| | || ||||
Sbjct 795 AACTGCCTGATTGTTGGAATGACGGGTACGGGAGATATTGTGTTTTCGCCGTTCGCGGGC 854
Query 931 TCTCTA-C-A-CCCTTTCTACATTTTCTTCTACAATATCGAGAGAAAGACTTATACAAGA 987
|||| | | ||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 855 GATCTATCAATCCCTTTCTACATTTTCTTCTACAATATCGAGAGCAAGACTTGTACAAGA 914
Query 988 GTCCAAATCAAGGGATTTAAAAAGTAT--GC-TGA-TTG-C----GTTCACACT-TTTCT 1037
||||| || ||||||||| || ||| | || | | || | ||||||| | |||||
Sbjct 915 GTCCATATTAAGGGATTTGAAGAGTTTAAGCATCAATTTACTTTCGTTCACA-TATTTCT 973
Query 1038 AGACTTTGTAGAGGATACGAAGTTGATTTAA 1068
||||||||||||||||| |||||| || |||
Sbjct 974 AGACTTTGTAGAGGATATGAAGTTTATGTAA 1004
Score = 148 bits (80), Expect = 6e-35
Identities = 187/236 (79%), Gaps = 18/236 (8%)
Strand=Plus/Plus
Query 161 TATGGGAATCCATACTTCGTGGTCCTGATTTCACGGAGCTGTACCTGACTAAATCTGTAG 220
||| ||||||||||||| || || |||| ||||||||| || ||| ||||| ||||| |
Sbjct 67 TATCGGAATCCATACTTGGTCATCTTGATGTCACGGAGCAGTTCCTAACTAAGTCTGT-G 125
Query 221 -CTCTTCGAAGGCTCTT-TTTCGCCCTCAAAGT-TAAT-ACAGAGTTATTGGTTTTCTCT 276
||| || | ||||||| ||| || | || | || | | | |||| ||||||||||||
Sbjct 126 TCTCATCCACGGCTCTTGTTT-TCCTTGGAA-TATACTGA-AAAGTTCTTGGTTTTCTCT 182
Query 277 TCACCTCAACCTCAAATTCCAGATGAGAACTCTTCTCTTGTAGTTGAAGCCACTCCTTAT 336
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 183 TCACCTCAACCTCAAAAACCAGATGAGAACTCTTCTCTTGTAG------CCACCCCTTAT 236
Query 337 AAGTGTTTTCCCaaaaaaaTTCCAACT-GAA-ATCTGCACCGCGCTCGGTGGCTTG 390
||||||||||||||| | ||||||| || |||| ||||| || ||||| |||
Sbjct 237 AAGTGTTTTCCCAAATATTTTCCAACCAGAGTATCT--ACCGCCCTAGGTGGATTG 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5