BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53380.1
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474468 jgi|Araly1|474468|fgenesh2_kg.1__4422__AT1G53380.1 2852 0.0
> Ahg474468 jgi|Araly1|474468|fgenesh2_kg.1__4422__AT1G53380.1
Length=1862
Score = 2852 bits (1544), Expect = 0.0
Identities = 1779/1888 (94%), Gaps = 33/1888 (2%)
Strand=Plus/Plus
Query 1 Gtttctcatctccagctctcattttctctctcatcttcaa-c-cttaactctcttttctc 58
|||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 1 GTTTCTCATCTCCAGCTCTCATTTTCTCTCTCATCTTCAACCTCTTAACTCTC--TTCTC 58
Query 59 tctactctttctttGGACGAATCTGTCTATTGTTTGTAAGTTTTCAAGGAAGGTAAAGAA 118
||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct 59 TCTACTCTTTCTTTGGACGAATCTG--TA--------AACATTGAAAGGAAGGTAAAGAA 108
Query 119 ACAGAGAGATCTAACTTCGTCTGCAGGGTTTAAGCAGAGGTTGGTTTGTGGATTCTTCGA 178
||||||||||||||||| |||||||||||||||||||||||||| || | | || |
Sbjct 109 ACAGAGAGATCTAACTTAGTCTGCAGGGTTTAAGCAGAGGTTGG-TT-T--A----TCAA 160
Query 179 TTTC-TTCTTCAGATTTAGTCTACAATGAAGTGAGAATTTCTAAAGATAAACAAAG-AAA 236
|||| ||||||||||||| |||||||||||||||||||||| ||| || ||||||| |||
Sbjct 161 TTTCTTTCTTCAGATTTACTCTACAATGAAGTGAGAATTTCAAAAAATTAACAAAGAAAA 220
Query 237 AACTTGAGACTTTAGCAAGATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGTAA 296
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AACTTGGGACTTTAGCAAGATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGT-- 278
Query 297 CAAACTCAGACGCAAGTTTGCTAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCC 356
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 279 -AAACTCAGACGCAAGTTTGCGAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCC 337
Query 357 AGAAGGAGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGTTGTCTGAGTCGTT 416
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 338 AGAAGGGGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGCTGTCTGAGTCTTT 397
Query 417 CTACAAGCTTGAGGAAGAGTATGAGAGAAGTCAGGGATTGGAAGCTCTTCTTGCGAAGCT 476
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 398 CTACAAGCTTGAGGAAGAGTACGAGAGAAGTCTGGCATTGGAAGCTCTTCTTGCGAAGCT 457
Query 477 TTTTGCTACGGTTTCTTCGATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCC 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TTTTGCTACGGTTTCTTCCATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCC 517
Query 537 GTATGACTCTATCGGGATTCAAAAAGCAGATAACTTGGTAGTCGCCGAGCTTAAGACTTT 596
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 518 GTATGACTCGATCGGGATTCAAAAAGCAGACAACTTGGTAGTCGCCGAGCTTAAGACTTT 577
Query 597 GTCTGAGCTGAAACAATGTTTCATGAAGAAACAAGTGGATCCAAATCCCGAAAGAACTCT 656
||||||| | |||||||||||| |||||||||| |||||||||||||||||||| ||| |
Sbjct 578 GTCTGAGATTAAACAATGTTTCTTGAAGAAACAGGTGGATCCAAATCCCGAAAGGACTTT 637
Query 657 GGTTCTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAA 716
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GGTACTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAA 697
Query 717 GAAGCTGGAGTCTCAGTACAAGCTTAAAGACTCAGAGATTATATTTCTGAGAGAGAAACT 776
|||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 698 GAAGCTTGAGTCTCAGTATAAGCTTAAAGACTCGGAGATTATATTTCTAAGAGAGAAACT 757
Query 777 TGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACCAAAGCGGACAACT 836
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 758 CGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACGAAAGCGGACAACT 817
Query 837 TTGCAATCCACTTGACAATCTTCACCTATCTGCGCTAAATCCAACACATTTCGTTACTTA 896
||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 818 TTGCAATCCTCTTGACAATCTTCACCTATCGGCGCTTAATCCAACACATTTCGTTACTTA 877
Query 897 TCTGCACCACACAGTCAAGTCCACCAGAGGTTTCGTCAAGCTAATGATCGAACAAATGAA 956
|| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 878 CCTACACCACACAGTCAAATCCACCAGAGGATTCGTGAAGCTAATGATCGAACAAATGAA 937
Query 957 ACTCGCTGGATGGGATATTTCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTCTACTA 1016
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 938 ACTAGCTGGTTGGGATATATCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTTTACTA 997
Query 1017 CAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCTCCAATGTGATGTTCGAAGC 1076
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 998 CAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCACCAATGTAATGTTCGAAGC 1057
Query 1077 GTTTCATCTACCGTACTTCTCAACTTCAAGCGAGTCAAGAAGCTACAAGAAGAAGAAACA 1136
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1058 ATTTCATCTACCGTACTTCTCAACTTCAAGCGATTCAAGAAGCTACAAGAAGAAGAAACA 1117
Query 1137 GAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAAGC 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1118 GAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAATC 1177
Query 1197 GAAAGATTATCTAACCGCGAGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTA 1256
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GAAAGATTATCTAACCGCGCGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTA 1237
Query 1257 CTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAA 1297
Query 1317 CCAAGTTTCTGCTGGTGAATTCCCGGAGACGAGCTTATTCTCTGGATTTCTTGAAATGGC 1376
|||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1298 CCAAGTTTCTGCTGGTGAGTTCCCTGAGACGAGCTTATGCTCTGGATTTCTTGAAATGGC 1357
Query 1377 GAAACGAATTTGGCTTTTGCATTGCTTGGCTCTCTCTTTTGAACGTGAAGCTGAGATCTT 1436
|||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1358 GAAAAGGATTTGGCTTTTGCATTGCTTGGCTTTCTCTTTTGAACATGAAGCTGAGATCTT 1417
Query 1437 TCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCAGAAGAAGC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1418 TCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCTGAAGAAGC 1477
Query 1497 GTTTTTCCCGGCGGCGGAGAGTTCGCCGGAGTCTGAGCCACGTGTCGCGTTCACGGTTGT 1556
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1478 GTTTTTTCCGGCGGCGGAGAGTTCGCCGGAATCTGAGCCACGTGTCGCGTTCACGGTTGT 1537
Query 1557 TCCAGGGTTTAGAATTGGGAAGACTTCAATACAATGCGAGGTCTATCTCTCGCTTTCATG 1616
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1538 TCCAGGGTTTAGGATTGGGAAGACTTCAATACAATGTGAGGTCTATCTCTCGCTTTCATG 1597
Query 1617 ATCGCCGTTTGATCTAAGATCCGAAAACGGACGGTGAAGATTCTTGGGCGGTTTGGTAAT 1676
||||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 1598 ATCGCCGTTCGATCTAAGATTCGAAAACGGACGGTGAGGATTCTTGGGCGATTTGGTAAT 1657
Query 1677 TTCTGAAAATGGTGGGGTATGTTTAGAAAATTGAGAAAAATTGTGGGCCGTTGGATTTGA 1736
||||| |||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1658 TTCTGGAAATACTGGGGTATTTTTAGAAAATGGAGAAAAATTGTGGGCCGTTGGATTTGA 1717
Query 1737 AGTAGCGAACTAGAGTTGTGTTTA-TGttttttttttttCTGTCTTTTGAGTTTTGTCGA 1795
||||||||| ||| |||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 1718 AGTAGCGAAGTAGTGTTGTGTTTAATGTTTTTTTTT---CTGTCTTATGAGTTTTGTCGA 1774
Query 1796 TATTAGTTCAGAGAACACAGAGGCATCTTTTAGCTGTTGTCCATTGAATATTTATCTCTT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 TATTAGTTCAGAGAACACAGAGGCATCTTTTAGCTGTTGTCCATTGAATATTTATCTCTT 1834
Query 1856 TTT--AATATAATATGTAAATATTTTAT 1881
||| |||||||||||||||||||||||
Sbjct 1835 TTTTTAATATAATATGTAAATATTTTAT 1862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5