BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53380.1 Length=1882 Score E Sequences producing significant alignments: (Bits) Value Ahg474468 jgi|Araly1|474468|fgenesh2_kg.1__4422__AT1G53380.1 2852 0.0 > Ahg474468 jgi|Araly1|474468|fgenesh2_kg.1__4422__AT1G53380.1 Length=1862 Score = 2852 bits (1544), Expect = 0.0 Identities = 1779/1888 (94%), Gaps = 33/1888 (2%) Strand=Plus/Plus Query 1 Gtttctcatctccagctctcattttctctctcatcttcaa-c-cttaactctcttttctc 58 |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| Sbjct 1 GTTTCTCATCTCCAGCTCTCATTTTCTCTCTCATCTTCAACCTCTTAACTCTC--TTCTC 58 Query 59 tctactctttctttGGACGAATCTGTCTATTGTTTGTAAGTTTTCAAGGAAGGTAAAGAA 118 ||||||||||||||||||||||||| || || || ||||||||||||||| Sbjct 59 TCTACTCTTTCTTTGGACGAATCTG--TA--------AACATTGAAAGGAAGGTAAAGAA 108 Query 119 ACAGAGAGATCTAACTTCGTCTGCAGGGTTTAAGCAGAGGTTGGTTTGTGGATTCTTCGA 178 ||||||||||||||||| |||||||||||||||||||||||||| || | | || | Sbjct 109 ACAGAGAGATCTAACTTAGTCTGCAGGGTTTAAGCAGAGGTTGG-TT-T--A----TCAA 160 Query 179 TTTC-TTCTTCAGATTTAGTCTACAATGAAGTGAGAATTTCTAAAGATAAACAAAG-AAA 236 |||| ||||||||||||| |||||||||||||||||||||| ||| || ||||||| ||| Sbjct 161 TTTCTTTCTTCAGATTTACTCTACAATGAAGTGAGAATTTCAAAAAATTAACAAAGAAAA 220 Query 237 AACTTGAGACTTTAGCAAGATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGTAA 296 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 AACTTGGGACTTTAGCAAGATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGT-- 278 Query 297 CAAACTCAGACGCAAGTTTGCTAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCC 356 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 279 -AAACTCAGACGCAAGTTTGCGAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCC 337 Query 357 AGAAGGAGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGTTGTCTGAGTCGTT 416 |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 338 AGAAGGGGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGCTGTCTGAGTCTTT 397 Query 417 CTACAAGCTTGAGGAAGAGTATGAGAGAAGTCAGGGATTGGAAGCTCTTCTTGCGAAGCT 476 ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| Sbjct 398 CTACAAGCTTGAGGAAGAGTACGAGAGAAGTCTGGCATTGGAAGCTCTTCTTGCGAAGCT 457 Query 477 TTTTGCTACGGTTTCTTCGATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCC 536 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 458 TTTTGCTACGGTTTCTTCCATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCC 517 Query 537 GTATGACTCTATCGGGATTCAAAAAGCAGATAACTTGGTAGTCGCCGAGCTTAAGACTTT 596 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 518 GTATGACTCGATCGGGATTCAAAAAGCAGACAACTTGGTAGTCGCCGAGCTTAAGACTTT 577 Query 597 GTCTGAGCTGAAACAATGTTTCATGAAGAAACAAGTGGATCCAAATCCCGAAAGAACTCT 656 ||||||| | |||||||||||| |||||||||| |||||||||||||||||||| ||| | Sbjct 578 GTCTGAGATTAAACAATGTTTCTTGAAGAAACAGGTGGATCCAAATCCCGAAAGGACTTT 637 Query 657 GGTTCTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAA 716 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 GGTACTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAA 697 Query 717 GAAGCTGGAGTCTCAGTACAAGCTTAAAGACTCAGAGATTATATTTCTGAGAGAGAAACT 776 |||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||| Sbjct 698 GAAGCTTGAGTCTCAGTATAAGCTTAAAGACTCGGAGATTATATTTCTAAGAGAGAAACT 757 Query 777 TGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACCAAAGCGGACAACT 836 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 758 CGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACGAAAGCGGACAACT 817 Query 837 TTGCAATCCACTTGACAATCTTCACCTATCTGCGCTAAATCCAACACATTTCGTTACTTA 896 ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 818 TTGCAATCCTCTTGACAATCTTCACCTATCGGCGCTTAATCCAACACATTTCGTTACTTA 877 Query 897 TCTGCACCACACAGTCAAGTCCACCAGAGGTTTCGTCAAGCTAATGATCGAACAAATGAA 956 || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct 878 CCTACACCACACAGTCAAATCCACCAGAGGATTCGTGAAGCTAATGATCGAACAAATGAA 937 Query 957 ACTCGCTGGATGGGATATTTCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTCTACTA 1016 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 938 ACTAGCTGGTTGGGATATATCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTTTACTA 997 Query 1017 CAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCTCCAATGTGATGTTCGAAGC 1076 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 998 CAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCACCAATGTAATGTTCGAAGC 1057 Query 1077 GTTTCATCTACCGTACTTCTCAACTTCAAGCGAGTCAAGAAGCTACAAGAAGAAGAAACA 1136 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1058 ATTTCATCTACCGTACTTCTCAACTTCAAGCGATTCAAGAAGCTACAAGAAGAAGAAACA 1117 Query 1137 GAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAAGC 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1118 GAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAATC 1177 Query 1197 GAAAGATTATCTAACCGCGAGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTA 1256 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1178 GAAAGATTATCTAACCGCGCGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTA 1237 Query 1257 CTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAA 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 CTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAA 1297 Query 1317 CCAAGTTTCTGCTGGTGAATTCCCGGAGACGAGCTTATTCTCTGGATTTCTTGAAATGGC 1376 |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| Sbjct 1298 CCAAGTTTCTGCTGGTGAGTTCCCTGAGACGAGCTTATGCTCTGGATTTCTTGAAATGGC 1357 Query 1377 GAAACGAATTTGGCTTTTGCATTGCTTGGCTCTCTCTTTTGAACGTGAAGCTGAGATCTT 1436 |||| | |||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 1358 GAAAAGGATTTGGCTTTTGCATTGCTTGGCTTTCTCTTTTGAACATGAAGCTGAGATCTT 1417 Query 1437 TCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCAGAAGAAGC 1496 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1418 TCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCTGAAGAAGC 1477 Query 1497 GTTTTTCCCGGCGGCGGAGAGTTCGCCGGAGTCTGAGCCACGTGTCGCGTTCACGGTTGT 1556 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1478 GTTTTTTCCGGCGGCGGAGAGTTCGCCGGAATCTGAGCCACGTGTCGCGTTCACGGTTGT 1537 Query 1557 TCCAGGGTTTAGAATTGGGAAGACTTCAATACAATGCGAGGTCTATCTCTCGCTTTCATG 1616 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1538 TCCAGGGTTTAGGATTGGGAAGACTTCAATACAATGTGAGGTCTATCTCTCGCTTTCATG 1597 Query 1617 ATCGCCGTTTGATCTAAGATCCGAAAACGGACGGTGAAGATTCTTGGGCGGTTTGGTAAT 1676 ||||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||| Sbjct 1598 ATCGCCGTTCGATCTAAGATTCGAAAACGGACGGTGAGGATTCTTGGGCGATTTGGTAAT 1657 Query 1677 TTCTGAAAATGGTGGGGTATGTTTAGAAAATTGAGAAAAATTGTGGGCCGTTGGATTTGA 1736 ||||| |||| |||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1658 TTCTGGAAATACTGGGGTATTTTTAGAAAATGGAGAAAAATTGTGGGCCGTTGGATTTGA 1717 Query 1737 AGTAGCGAACTAGAGTTGTGTTTA-TGttttttttttttCTGTCTTTTGAGTTTTGTCGA 1795 ||||||||| ||| |||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct 1718 AGTAGCGAAGTAGTGTTGTGTTTAATGTTTTTTTTT---CTGTCTTATGAGTTTTGTCGA 1774 Query 1796 TATTAGTTCAGAGAACACAGAGGCATCTTTTAGCTGTTGTCCATTGAATATTTATCTCTT 1855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1775 TATTAGTTCAGAGAACACAGAGGCATCTTTTAGCTGTTGTCCATTGAATATTTATCTCTT 1834 Query 1856 TTT--AATATAATATGTAAATATTTTAT 1881 ||| ||||||||||||||||||||||| Sbjct 1835 TTTTTAATATAATATGTAAATATTTTAT 1862 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70695494720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5