BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53400.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474470 jgi|Araly1|474470|fgenesh2_kg.1__4424__AT1G53400.1 1206 0.0
> Ahg474470 jgi|Araly1|474470|fgenesh2_kg.1__4424__AT1G53400.1
Length=747
Score = 1206 bits (653), Expect = 0.0
Identities = 718/749 (96%), Gaps = 6/749 (1%)
Strand=Plus/Plus
Query 1 AATCATCAACACCGATTCATCGTCATCTTCAACTCGGTCTTGATCTTCGTCTTTCTACCG 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AATCATCAACACCGATTCATCGTCATCTTCAACTCGGTCTTGATCTTCTTCTTTCTACCG 60
Query 61 ACATCTAATTTGTTTGTCTGAAGATTCGTaaaaaaaaaTCTCTTTGCTTTCTATTAAGG- 119
||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 61 ACATCTAATTTATTTGTCTCAAGATTCG-CCAAAAAAATCTCTTTGCTTTCTCTTAAGGA 119
Query 120 AA-AAGAAAAGTTTGCGACTTTGATTGGTTTCGATGAAGCTTCGACAAACACAGGGTTTT 178
|| || |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 120 AAGAAAAAAAGTTTGCGACTTTGATTGGTTTCGATGAAGCTTCGACAAACCCACTGTTTT 179
Query 179 GTCTGAATCCTTTTGGTTTATTTCC-GAGAGAATTTGTGTTTTTTACTTTAAGGGTTTGA 237
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 180 GTCTGAATCCTTTTGGTTTATTTCCTGAGAGAATTTGTGTTTTTTACTTGAAGGGTTTGA 239
Query 238 AAGAAGAAGCAAGAACATAAATGGGTTGTGCTGGATCGACACAGTCTCAAGCAGATGGGT 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGAAGAAGCAAGAACATTAATGGGTTGTGCTGGATCGACACAGTCTCAAGCAGATGGGT 299
Query 298 CAGTGAAGAAAATTAGGAAGCCGAAACCGTGGAAGCATACCCAACCGATCACGAAAGCTG 357
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAGTGAAGAAAATTAGAAAGCCGAAACCGTGGAAGCATACCCAACCGATCACGAAAGCTG 359
Query 358 AGCTTATGAAACTTAGAGAAGAGTTTTGGGACACTGCTCCTCATTATGGTGGTAGAAAAG 417
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 360 AGCTTATGAAACTTAGAGAAGAGTTTTGGGACACTGCTCCTCACTATGGCGGTAGAAAAG 419
Query 418 AGATATGGGACGCACTTCGCGCTGCTGCAGAAGCTGACATATCTCTTGCACAAGCAATTG 477
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 420 AGATATGGGACGCACTTCGGGCAGCTGCAGAAGCTGATATATCTCTTGCACAAGCAATTG 479
Query 478 TGGACAGTGCAGGAGTCATTGTTCAGAACACAGATCTCACAGTCTGCTATGACGAGAGAG 537
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 480 TGGACAGTGCAGGAGTCATTGTTCAGAACACAGATCTCACTGTATGCTATGACGAGAGAG 539
Query 538 GTGCTAAGTATGAGCTACCTAAGTATGTTCTAAGCGAGCCTACCAACTTGGAGGAAGAAA 597
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 540 GTGCTAAGTATGAGCTACCGAAGTATGTTCTTAGCGAGCCTACCAATTTGGAGGAAGAAA 599
Query 598 ATTGATTTAAGATCAAGAATATTCGAAAAGACAAGAAAAGAAAAGAACCAAATGTAAATC 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 ATTGATTTAAGATCAAGAATATTCGAAAAGACAA-AAAAGAAAAGAACCAAATGTAAATC 658
Query 658 TTGTGTGTAAGTAGTTACATTAGGATTCTCTGCTTTTGTCTATTTAAACACTTATTAAAA 717
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TTGTGTGTAAGTAGTTACATTAGGATTCTCTGCTTTTGTCTATTTTAACACTTATTAAAA 718
Query 718 A-GATTGATTCCCACATCTCTCTCCCTCT 745
| |||||||||||||||||||||| ||||
Sbjct 719 AAGATTGATTCCCACATCTCTCTCTCTCT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5