BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53420.1
Length=2862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474471 jgi|Araly1|474471|fgenesh2_kg.1__4425__AT1G53420.1 4294 0.0
Ahg478899 jgi|Araly1|478899|fgenesh2_kg.3__1600__AT3G14840.2 638 0.0
> Ahg474471 jgi|Araly1|474471|fgenesh2_kg.1__4425__AT1G53420.1
Length=2862
Score = 4294 bits (2325), Expect = 0.0
Identities = 2692/2871 (94%), Gaps = 18/2871 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTTAAATCGGTttctcttcacttccttctcgttctttctcttcttcATCGTCCAT 60
|||| ||| | || |||||||||||||||||||| | | |||||||||||| || || |
Sbjct 1 ATGTTGTTTATTCAGTTTCTCTTCACTTCCTTCTTGCTATTTCTCTTCTTCCTCTTCGGT 60
Query 61 TTCGCATCGTCTGCAACTTTGCCAACACAAGAAGGGGAGGCTTTTAAAGTTGTACTAACC 120
|||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 61 TTCGCATCATCTGCAACTTTGCCAACCCAAGAAGGGGAGGCTTTTAAAGTTGCACTAACC 120
Query 121 ACATTGAAAAAGACGAATATTGATTTAAATGTGGATCCATGCGAAGTCTCATCTACTGGA 180
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 ACATTGAAAAAGACTAATATTGATTTAAATGCGGATCCATGCGAAGTCTCATCTACTGGA 180
Query 181 AATGAATGGTCAACCATCAGCAGAAATTTGAAGAGAGAAAATCTTCAAGGGTCTCTTCCA 240
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTGAATGGTCAACCATCAGCAGAAATTTGAAGAGAGAAAATCTTCAAGGGTCTCTTCCC 240
Query 241 AAAGAGTTAGTGGGACTTCCTTTACTGCAAGAGATTGATCTCTCAAGAAACTATCTCAAT 300
|||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 241 AAAGAGTTTGTGGGACTTCCTTTTCTGCAAAAGATTGATCTCTCAAGAAACTATCTCAAT 300
Query 301 GGTTCCATCCCTCCTGAATGGGGAGTCTTGCCACTTGTCAACATTTGGCTTC-TCGGAAA 359
|||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||
Sbjct 301 GGTTCCATCCCTCCTGAATGGGGAGTCTTGCCACTTGTCAACATATCGCTTCGT-GGAAA 359
Query 360 CCGATTAACAGGTCCAATCCCTAAGGAGTTTGGAAACATTACAACTCTTACTAGCCTTGT 419
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CCGATTAACGGGTCCAATCCCTAAGGAATTTGGAAACATTACAACTCTTACTAGCCTTGT 419
Query 420 CTTGGAAGCCAATCAACTTTCAGGAGAATTACCTCTTGAGCTAGGGAATCTACCAAACAT 479
| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 420 CCTGGAAGCCAATCAACTTTCAGAAGAATTACCTCTTGAGCTCGGGAATCTACCAAACAT 479
Query 480 TCAACAAATGATTCTTAGCTCGAATAACTTTAATGGTGAA-ATTCCATCTACATTTGCAA 538
| || ||||||||||||||||||||||||| || || || ||||||||||||||| |||
Sbjct 480 TAAAAAAATGATTCTTAGCTCGAATAACTTCAACGG-AAACATTCCATCTACATTTACAA 538
Query 539 AACTAACCACCTTGAGAGATTTTCGTGTAAGTGACAACCAGTTGTCAGGAACAATTCCAG 598
|||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||
Sbjct 539 AACTAACCACCTTGAGAGATTTTCATGTATGTGACAACCAGTTTTCAGGAACAATTCCAG 598
Query 599 ATTTCATCCAAAAATGGACTAAGCTTGAGCGACTGTTTATTCAAGCAAGTGGTTTAGTTG 658
|||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 599 ATTTCATCCAAAAATGGACTAAACTTGAGAAACTGGTTATTCAAGCAAGTGGTTTAGTTG 658
Query 659 GACCAATTCCCATTGCCATTGCTTCTCTCGTAGAGTTAAAAGACTTGAGAATCAGCGATT 718
|||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GACCGATTCCTAGTGCCATTGCTTCTCTCGTAGAGTTAAAAGACTTGAGAATCAGCGATT 718
Query 719 TG---AATGGACCCGAATCTCCATTTCCACAGTTAAGGAACATAAAAAAGATGGAGACAT 775
|| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 719 TGAATAATGGACCCGAATCTCCCTTTCCACCGTTAAGGAACATAAAAAAGATGGAGACAT 778
Query 776 TAATTCTTAGGAACTGCAATCTCACAGGAGACTTACCTGATTATCTTGGAAAGATTACCT 835
||||||| ||||||||||| || |||||||||||||||| |||||||||| |||||||
Sbjct 779 TAATTCTGAGGAACTGCAACCTTACAGGAGACTTACCTGCGTATCTTGGAACTATTACCT 838
Query 836 CCTTCAAA-TTCTTAGATCTTAGCTTCAATAAATTAAGTGGAGCCATCCCTAACACTTAT 894
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTT-AAAGCTCTTAGATCTTAGCTTCAATAAATTAAGTGGAGCCATCCCTAACACTTAT 897
Query 895 ATTAATCTTAGAGACGGAGGTTACATATATTTTACAGGAAACATGTTAAACGGGTCGGTT 954
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GTTAATCTTAGCGACGGAGGTTACATATATTTTACAGGAAACATGTTAAATGGGTCGGTT 957
Query 955 CCAGATTGGATGGTAAATAAAGGATATAAAATTGATCTTAGTTACAACAATTTCTCAGTA 1014
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCAAATTGGATGGTAAATAAAGGATATAAAATTGATCTTAGTTACAACAATTTCTCAGTA 1017
Query 1015 GATCCAACCAATGCAGTATGCAAGTACAATAATGTACTTTCATGCATGAGAAACTACCAA 1074
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1018 GATCCAACCAATGCCGTATGCAAG---AATAATGCACTTTCATGCATGAGAAACTACCAG 1074
Query 1075 TGTCCTAAAACTTTCAATGCTCTTCATATAAACTGTGGTGGGGATGAAATGTCTATCAAT 1134
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 TGTCCTAAAACTTTCAATGGTCTTCATATAAACTGTGGTGGAGATGAAATGTCTATCAAT 1134
Query 1135 GGGACAATATATGAATCTGATAAGTACGATAGACTGGAGAGTTGGTACGAAAGTCGAAAT 1194
||||||||||||||| |||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 1135 GGGACAATATATGAAGCTGATAAGTATGATAGACTGGAGAGTTTATACAAAAGTCGAAAT 1194
Query 1195 GGATGGTTCTCAAACAACGTAGGAGTCTTCGTAGACGATAAACATGTTCCCGAGAGAGTA 1254
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1195 GGGTGGTTCTCAAGCAACGTAGGAGTCTTCGTAGACGATAAACATGTTCCCGAGAGAATA 1254
Query 1255 ACCATCGAGTCTAACTCATCCGAGCTCAATGTGGTTGATTTTGGTCTGTATACGCAAGCT 1314
||||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 1255 ACCATCGGGTCTAACTCATCTGAGCTCAATGTGGTAGATTTTGGGCTGTATACGCAAGCT 1314
Query 1315 CGCATATCAGCTATCTCACTCACTTACTATGCATTGTGTTTAGAAAATGGAAATTACAAC 1374
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CGAATCTCAGCCATCTCACTCACTTACTATGCATTGTGTTTAGAAAATGGAAATTACAAT 1374
Query 1375 GTTAATCTCCATTTCGCCGAGATTATGTTCAATGGTAACAACAATTATCAAAGCTTGGGT 1434
||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1375 GTTAATCTCCATTTCGCCGAGATTATGTTTAGCGGTAACAACACTTATCAAAGCTTGGGT 1434
Query 1435 AGACGGTTTTTCGACATATACATTCAGAGGAAGCTCGAGGTTAAAGATTTCAATATCGCC 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AGACGGTTTTTCGACATATACATTCAGAGGAAGCTCGAGGTTAAAGATTTCAATATCGCT 1494
Query 1495 AAGGAGGCAAAAGATGTTGGAAACGTTGTTATTAAGACATTTCCGGTCGAGATAA-AAGA 1553
||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1495 GAGGCGGCAAAAGCTGTTGGAAACGTTGTTATTAAGACATTTCCGGTCGAGGTAACAA-A 1553
Query 1554 TGGAAAGTTGGAGATACGATTGTATTGGGCCGGGAGAGGAACTACAGTCATTCCCAAAGA 1613
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1554 CGGAAAGTTGGAGATACAATTGTATTGGGCCGGGAAAGGAACTACAGTCATTCCCAAAAA 1613
Query 1614 ACGTGTTTATGGTCCTCTCATATCAGCTATATCAGTGGATTCAAGTGTT-AATCCATCTC 1672
|||||| ||||||||||||||||| ||| ||||||| ||| ||| | || |||||| | |
Sbjct 1614 ACGTGTATATGGTCCTCTCATATCTGCTGTATCAGTTGATCCAAAT-TTCAATCCACCAC 1672
Query 1673 CTAGAAATGGTATGAGTACTGGTACTCTCCATACATTGGTAGTGATCTTATCCATTTTCA 1732
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1673 CTAGAAATGGTATGAGTACTGGTACTCTCCATGCATTGGTAGTGATGGCATGCATTTTCA 1732
Query 1733 TTGTG-TTTCTCGTATTTGGAACTCTATGGAAAAAAGGTTACTTGAGATCGAAAAGCCAA 1791
|| || |||| |||| |||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1733 TTTTGTTTTC-CGTACTTGGAATTCTATGGAAAAAAGGTTGCTTGAAATCGAAAAGCCAA 1791
Query 1792 ATGGAAAAAGATTTCAAAAGTTTGGAACTCATGATTGCTTCTTTCTCGTTGAGGCAAATC 1851
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 ATGGAAAGAGATTTCAAAAGTTTGGAACTCATGATTGCTTCTTTCTCGTTGAGGCAAATC 1851
Query 1852 AAAATCGCTACAAACAACTTTGATTCTGCAAATAGGATTGGAGAAGGCGGCTTTGGTCCT 1911
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1852 AAAATCGCTACAAACAACTTTGATTCTGCAAATAGAATTGGAGAAGGCGGCTTTGGTCCT 1911
Query 1912 GTATACAAGGGAAAGTTATTTGATGGAACAATAATCGCAGTGAAACAACTTTCGACAGGA 1971
||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 1912 GTATACAAGGGAAAGTTGTCTGATGGAACAATAATCGCGGTGAAACAACTTTCGACAGGA 1971
Query 1972 TCAAAACAAGGGAACCGCGAGTTCTTGAACGAGATTGGCATGATTTCAGCTCTGCACCAC 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 TCAAAACAAGGGAACCGCGAGTTCTTGAACGAGATTGGCATGATTTCAGCTCTGCACCAC 2031
Query 2032 CCTAATCTGGTTAAACTATATGGATGTTGCGTTGAAGGAGGCCAACTTTTATTAGTCTAT 2091
|| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 2032 CCGAATCTGGTTAAACTATATGGATGTTGCGTTGAAGGAGACCAGCTTTTGCTAGTCTAT 2091
Query 2092 GAGTTTGTAGAAAACAACAGTCTCGCTCGAGCATTGTTTGGTCCTCAAGAAACTCAGTTG 2151
|||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||
Sbjct 2092 GAGTTTGTAGAAAACAACAGCCTTGCTAGAGCATTGTTTGGTCCCCAAGAAACTCAGTTG 2151
Query 2152 AGATTGGACTGGCCTACAAGACGGAAGATCTGTATCGGAGTGGCGAGAGGGCTAGCATAT 2211
||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||
Sbjct 2152 AGATTGGACTGGCCTACAAGACGGAAGATATGTATCGGGGTAGCGAGAGGACTAGCATAT 2211
Query 2212 CTACACGAAGAATCGAGGCTAAAGATTGTACACAGAGACATCAAAGCCACTAATGTGTTG 2271
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2212 CTACACGAAGAATCGAGGCTAAAGATTGTACATAGAGACATCAAATCCACTAATGTGTTG 2271
Query 2272 CTAGACAAACAACTGAATCCGAAAATATCAGACTTTGGTCTTGCCAAGCTTGATGAAGAG 2331
|||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2272 TTAGACAAAGAACTGAATCCAAAAATATCAGACTTTGGTCTTGCTAAGCTTGATGAAGAG 2331
Query 2332 GACAGCACTCACATTAGCACTCGAATCGCTGGAACATTTGGTTACATGGCTCCGGAGTAC 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2332 GACAGCACTCACATTAGCACTCGAATCGCTGGAACATTTGGTTACATGGCTCCAGAGTAC 2391
Query 2392 GCCATGAGAGGCCATTTGACAGATAAAGCTGACGTTTACAGCTTTGGTATAGTAGCTCTA 2451
||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||
Sbjct 2392 GCCATGAGAGGCCATTTGACAGATAAAGCCGATGTTTACAGCTTTGGCATTGTAGCTCTA 2451
Query 2452 GAGATTGTTCATGGAAGAAGCAATAAAATAGAACGATCCAAAAACAATACCTTCTATCTT 2511
||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2452 GAGATCGTTCATGGAAGAAGCAATAAAATAGAACGTTGCAAAAACAATACCTTCTATCTT 2511
Query 2512 ATTGACTGGGTGGAGGTTTTGAGAGAGAAGAATAATCTGTTGGAACTGGTGGATCCAAGA 2571
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 2512 ATTGACTGGGTGGAGGTTTTGAGGGAGCAGAATAATCTCTTGGAACTGGTGGATCCAAGA 2571
Query 2572 CTAGGATCAGAATATAACAGAGAAGAAGCAATGACCATGATCCAAATTGCGATAATGTGT 2631
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2572 TTAGGATCAGATTACAACAGAGAAGAAGCAATGACAATGATCCAAATTGCGATAATGTGT 2631
Query 2632 ACAAGCTCAGAACCTTGTGAGAGACCGTCAATGTCAGAAGTGGTGAAGATGTTAGAAGGT 2691
||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 2632 ACAAGCTCAGAGCCTTGTGTTAGACCGTCAATGTCAGAAGTGGTGAAGATATTGGAAGGT 2691
Query 2692 AAGAAGATGGTGGAGGTGGAGAAACTTGAAGAAGCTTCAGTCCATAGAGAAACAAAGAGA 2751
|||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2692 AAGAAGATAGTGGAGTTGGAGAAGCTTGAGGAAGCTTCAGTCCATAGAGAAACAAAGAGA 2751
Query 2752 CTTGAAAACATGAACACGATGAAGAAGTACTACGAAATGATAGGGCAAGAGATAAGTACA 2811
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2752 CTTGAAAACATGAACACGATGAAGAAGTATTACGAAATGATAGGGCAAGAGATAAGTACG 2811
Query 2812 AGCATGAGCATGATCATGAGTGATCGTAGTGAATCATCAGCAGATCATTAG 2862
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2812 AGCATGAGCATGATCATGAGTGATCATAGTGAATCATCAGCAGATCATTAG 2862
> Ahg478899 jgi|Araly1|478899|fgenesh2_kg.3__1600__AT3G14840.2
Length=3065
Score = 638 bits (345), Expect = 0.0
Identities = 1023/1338 (76%), Gaps = 95/1338 (7%)
Strand=Plus/Plus
Query 1333 CTCACTTACTATGCATTGTGT-TTAGAAAATGGAAATTACAAC-GTTAATCTCCATTTCG 1390
||||||||||| ||||||||| || || || ||||| || || |||||||| |||||||
Sbjct 1360 CTCACTTACTACGCATTGTGTCTTGGAGAA-GGAAACTA-TACGGTTAATCTTCATTTCG 1417
Query 1391 CCGAGATTATGTTCAATGGTAACAACAATTATCA-AAGCTTGGGTAGACGGTT-TTTCGA 1448
| || |||||||||| || |||||| ||| | || ||||| ||||| || ||| ||
Sbjct 1418 CTGAAATTATGTTCAGTGACAACAACTCGTAT-ACCAGTTTGGGAAGACGATTCTTT-GA 1475
Query 1449 CATATACATTCAGAGG-AAGCTCGAGGTTAAAGATTTCAATATCGCCAAGGAGGCAAAAG 1507
||||||| ||||| || || || ||||| || ||||||||||| | | ||||||||||
Sbjct 1476 CATATACGTTCAG-GGTAAACTTGAGGTGAAGGATTTCAATATTGTTGATGAGGCAAAAG 1534
Query 1508 ATGTTGGAA-ACGTTGTTATTAAGACATTTCCGGTCGA-GA-TAAAAGAT-GGAAAGTTG 1563
|| |||| | | ||| |||||| |||||||||| | | || | || ||||| ||
Sbjct 1535 GTGCAGGAAGA-GCTGTGGTTAAGAAATTTCCGGTC-ACAATTACGA-ATGGGAAA-CTG 1590
Query 1564 GAGA-TACGATTGTATTGGGCCGGGAGAGGAACTAC-AGTC-ATTCCCAAAGA-ACGTGT 1619
|| | || |||| | ||||| |||| ||||||| | || | ||| || || | ||||
Sbjct 1591 GATATTA-GATTACAGTGGGCTGGGAAAGGAACT-CAAG-CTATT-CCTGTGAGAGGTGT 1646
Query 1620 TTATGGTCCTCTCATATCAGCTATATCAGTGGATTCAAGTGTTAATCCATCTCCTA-GAA 1678
||||||||||||||||| ||| ||||||| ||| ||| | ||| |||| | | | |||
Sbjct 1647 ATATGGTCCTCTCATATCTGCTGTATCAGTAGATCCAAATTTTATTCCA-C-CAAAGGAA 1704
Query 1679 -ATGGTA-TGAGTACTGGTA-CTC--TCCATACA----TTGGTAGTG--A-T-CTT-ATC 1724
||| | || || ||| | ||| | | || ||||||||| | | ||| | |
Sbjct 1705 CCTGGAACTG-GTGGTGGAAGCTCTGTTGGTGCAGTGGTTGGTAGTGTAATTGCTTCAAC 1763
Query 1725 CAT-TTTCATTGTG-TTTCTCGTATTTGG-A-ACTCTATGGAAAAAAGGTTACTTGAGAT 1780
| |||| ||||| ||| | | || | | | ||||| | ||| | ||| |||
Sbjct 1764 TTTGTTTC-TTGTGCTTT-TAATCGGCGGTATA-T-TATGGTGGAGAGGCTGCTTAAGAC 1819
Query 1781 CGAAAAGCCAAATGGAAAAAGATTTCAA-AAGTTTGGAACT-CATGAT-TGCTTCTTTCT 1837
| || || || ||||||||||||||||| || || || | || ||| | ||| ||||
Sbjct 1820 CCAAGAGTCAGATGGAAAAAGATTTCAAGAA-CTTAGATTTCCA-GATCAG-TTCATTCT 1876
Query 1838 CGTTGAGGCAAATCAAAATCGCTACAAACAACTTTGATTCTGCAAATAGGATTGGAGAAG 1897
||||||||||||||||| | || ||| | ||||||||| ||||||| | ||| |||||||
Sbjct 1877 CGTTGAGGCAAATCAAAGTAGCCACAGATAACTTTGATCCTGCAAACAAGATCGGAGAAG 1936
Query 1898 GCGGCTTT-GGTCCTGTATACAAGGG-A-A-A--G-TTATT---TGATGGAACAATAATC 1947
| || ||| ||||||||| ||||||| | | | | | || ||||||||| |||||
Sbjct 1937 GTGG-TTTCGGTCCTGTACACAAGGGAATACAGGGAGTGTTGACTGATGGAACCGTAATC 1995
Query 1948 GCAGTGAAACAACTTTCGACAG-GATCAAAACAAGGGAACCGCGAGTTCTTGAACGAGAT 2006
|| ||||| || || ||| | | ||||||||||||||| | |||||||||||||||||
Sbjct 1996 GCGGTGAAGCAGCTATCGGC-GAAATCAAAACAAGGGAATAGGGAGTTCTTGAACGAGAT 2054
Query 2007 TGGC-ATGATTTCAGCTCTGCACCACCCTA-ATCTGGTTAAACTATATGGATGTTGCGTT 2064
| || |||||||| |||||||| || || | || |||||||||||||||||||||| ||
Sbjct 2055 T-GCTATGATTTCGGCTCTGCAGCATCC-ACATTTGGTTAAACTATATGGATGTTGTGTC 2112
Query 2065 GAAGGAGGCCAACTTTTATTAGTCTATGAGT--TTGTAGAAAACAACAGTCTCGCTCGAG 2122
||||| | || || | |||| || |||| ||| ||||||||||||||||| ||||
Sbjct 2113 GAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTG--GAAAACAACAGTCTCGCACGAG 2170
Query 2123 CAT-TGTTT-GGTCCTCAAGAAACTCAGTTGA-GATTGGACTGGCCTACAAGACGGAAGA 2179
| | | ||| ||||||||||| |||||| | | | | | ||||| | || | |||||
Sbjct 2171 C-TCT-TTTCGGTCCTCAAGAGACTCAGAT-ACCACTAAATTGGCCAATGAGGCAGAAGA 2227
Query 2180 TCTGTATCGGAGTGGCGAGAGGGCTAGCATATCTACACGAAGAATCGAGGCTAAAGATTG 2239
| ||| ||||| | |||||||| |||| ||||| ||||| ||||| || || ||||| |
Sbjct 2228 TTTGTGTCGGAATAGCGAGAGGATTAGCTTATCTTCACGAGGAATCAAGACTCAAGATCG 2287
Query 2240 TACACAGAGACATCAAAGCCACTAATGTGTTGCTAGACAAACAACTGAATCCGAAA-ATA 2298
|||||||||||||||||||||||||||| ||||| || || |||| || || ||| ||
Sbjct 2288 TACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGGAACT-AAACCCAAAGATT 2346
Query 2299 TCAGACTTTGGTCTTGCCAAGCTTGATGAAGAGGACAGCACTCACATTAGCACTCGAATC 2358
|| || ||||||||||| |||||||||||||| || | ||| ||||| ||||| ||| |
Sbjct 2347 TCTGATTTTGGTCTTGCTAAGCTTGATGAAGAAGAAAACACACACATCAGCACACGAGTT 2406
Query 2359 GCTGGAACATTTGGTTACATGGCTCCGGAGTACGCCATGAGAGGCCATTTGACAGATAAA 2418
|| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2407 GCCGGAACATATGGATACATGGCTCCAGAGTACGCCATGAGAGGCCATTTGACAGATAAA 2466
Query 2419 GCTGACGTTTACAGCTTT-GGTATAGTAGCTCTAGAGATTGTTCATGG-AAGAAGCAATA 2476
|| ||||| ||||| ||| ||| | || ||| |||| || ||||| || |||| |||| |
Sbjct 2467 GCCGACGTCTACAG-TTTCGGTGTTGTGGCTTTAGAAATCGTTCACGGGAAGA-GCAACA 2524
Query 2477 AAATAGAACGATCCAAAAACA-ATACCTTCTATCTTATTGACTGGGTGGAGGTTTTGAGA 2535
| |||||||||| || |||||||||| ||| ||||||||||| | ||| | ||
Sbjct 2525 CGAGCTCACGATCCAAAG-CAGATACCTTCTACCTTCTTGACTGGGTGCACGTTCTAAGG 2583
Query 2536 GAG-AAGAATAATCTGTTGGAACTGGTGGATCCAAGACTAGGATCAGAATATAACAGAGA 2594
||| || || |||||||| ||| | || |||||||| |||||| |||| || |||| | |
Sbjct 2584 GAGCAA-AACAATCTGTTTGAAGTAGTAGATCCAAGGCTAGGAACAGATTACAACAAACA 2642
Query 2595 AGAAGCAATGACCATGAT 2612
|||||||||||| |||||
Sbjct 2643 AGAAGCAATGACGATGAT 2660
Score = 411 bits (222), Expect = 2e-113
Identities = 625/812 (77%), Gaps = 57/812 (7%)
Strand=Plus/Plus
Query 223 CTTCAAGGGTCTCTTCCAAAAGAGT-TAGT-GGGACTTCCTTTAC-TGCAAGAGATTGAT 279
|||||||| ||||||| ||||| | | | || |||||||| | ||||||||||||||
Sbjct 292 CTTCAAGGAACTCTTCCTAAAGA-TCT-TTCAGGCCTTCCTTT-CTTGCAAGAGATTGAT 348
Query 280 CTCTCAAGAAACTATCTCAATGGTTCCATCCCTCCTGAATGGGGAGT-CTTGCCACTTGT 338
|| || ||||||| |||||| |||||||| ||||| ||||||| | | ||||||||||||
Sbjct 349 CTGTCTAGAAACTTTCTCAACGGTTCCATTCCTCCCGAATGGGCA-TCCTTGCCACTTGT 407
Query 339 CAACATTTGGCTTCTCGGAAA-CCGATTAACAGGTCCAATCCCTAAGGAGTTTGGAAACA 397
|||||| | ||||| ||||| | || |||| ||||||||||| || || |||||||||
Sbjct 408 CAACATCTCACTTCTTGGAAATCGGA-TAACTGGTCCAATCCCAAAAGAATTTGGAAACC 466
Query 398 TTAC-AACTCTTAC-TAGCCTTGTCTTGGAAGCCAATCAACTTTCAGGAGAA-TTACCTC 454
|||| ||| ||| | || ||||||||||| ||| ||| | ||||| ||| |||||||
Sbjct 467 TTACTAAC-CTT-CGAAGTTTTGTCTTGGAATACAACCAAATCTCAGG-GAAGTTACCTC 523
Query 455 TTGAGCTAGGGAATCTACCAAACATTCAACAAATGATTCTTAGCTCGAATAACTTT-AAT 513
||||| |||||| |||| |||||| |||| || | | |||||| || ||| | |
Sbjct 524 CAGAGCTCGGGAATTTACCCAACATT---CAAA-GA--C-T--CTCGAACAA-TTTGAGT 573
Query 514 GGTGAAATTCCATCTACATTTGCAAAACTAACCAC-CTTGAGAGATTTTCGTGTAAGTGA 572
|| ||||| ||| ||||||| | ||||| || | ||| ||||| ||| | |||||
Sbjct 574 GGGGAAATACCAAGTACATTTTCCAAACTTGTTACAC-TGACTGATTTCCGTATCAGTGA 632
Query 573 CAACCAGTTGTCAGGAACAATTCCAGATTTCATCCAAAAATGGACTAAG-CTTGAGCGAC 631
||| ||||| | || || || |||||||||||||| || ||||| | | |||||| ||
Sbjct 633 CAATCAGTTCACTGGTACTATACCAGATTTCATCCAGAACTGGAC-AGGACTTGAGAAAC 691
Query 632 TGTTTATTCAAGCAAGTGGTTTAGTTGGACCAATTCCCATTGCCATTGCTTCT-CTCGTA 690
|| |||||||||||||||||||||||||||| ||||| | |||||||| | || || | |
Sbjct 692 TGGTTATTCAAGCAAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGT-CTTCTGGGA 750
Query 691 GAGTTAAAAGACTTGAGAATCAGC-GA-TTTGAATGGACCCGAATCTCCATTTCCAC-AG 747
| |||| |||||||||||||| | || ||| | |||||| |||||||||||||| | |
Sbjct 751 AACTTAACAGACTTGAGAATCA-CTGACTTT-AGTGGACCTGAATCTCCATTTCCGCCAC 808
Query 748 TTAAGGAACATAAAAAAGATGGAGACATTA-ATTCTTAGGAACTGCAATCTCACAGG-AG 805
| || ||||| | | | || ||| ||| ||||||||||||||||| || ||||| |
Sbjct 809 T-AATAAACATGACATCGTTGAAGA-ATTTGATTCTTAGGAACTGCAACCTTACAGGCA- 865
Query 806 ACTTACCTGATTATCTTGGAA--AGATTACCTCCTTCA-AATTC-TTAGATCTTAGCTTC 861
| |||||| ||||||||| ||| |||| | | |||| ||||||||||||||
Sbjct 866 ATTTACCTTCGTATCTTGGACGCAGA--ACCT--TAAAGAATTTGTTAGATCTTAGCTTT 921
Query 862 AATAAATTAAGTGGAGCCA-TCCCTAACACTTATATTAA-TCTTAGAGACGGAGGTTACA 919
|| ||| | |||||| ||| |||| | | ||||| | |||| ||| | || |||||
Sbjct 922 AACAAACTGAGTGGA-CCAATCCCCGAGAGTTATAC-AGCTCTTTCAGATGTAGATTACA 979
Query 920 TATATTTTACAGGAAACATGTTAAACGGGTCGGTTCCAGATTGGATGGTAAATAAAGGAT 979
||||||||||| | ||||||||||||||| || ||| | ||||||| | | ||||||
Sbjct 980 TATATTTTACAAGTAACATGTTAAACGGGGAAGTACCACACTGGATGGCAGACAAAGGAG 1039
Query 980 ATAAAATTGATCTTAG-TTACAACAATTTCTC 1010
| | ||||||||| | |||||| || |||||
Sbjct 1040 ACACGATTGATCTT-GCTTACAATAACTTCTC 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108023934820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5