BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53450.1
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474474 jgi|Araly1|474474|fgenesh2_kg.1__4428__AT1G53450.2 1563 0.0
Ahg478897 jgi|Araly1|478897|fgenesh2_kg.3__1598__AT3G14830.1 837 0.0
Ahg474473 jgi|Araly1|474473|fgenesh2_kg.1__4427__AT1G53440.1 484 8e-136
> Ahg474474 jgi|Araly1|474474|fgenesh2_kg.1__4428__AT1G53450.2
Length=2086
Score = 1563 bits (846), Expect = 0.0
Identities = 948/997 (95%), Gaps = 8/997 (1%)
Strand=Plus/Plus
Query 651 GGCTTATGTAGACACAAAGGAGAACTC-AGCGTTTTCTAAGACAGATACTGCTTCCTCTG 709
||||||||| |||||||| ||| |||| || | |||||||||||||||||||||||||||
Sbjct 625 GGCTTATGTTGACACAAAAGAGGACTCAAG-GCTTTCTAAGACAGATACTGCTTCCTCTG 683
Query 710 GTACTGTGTATGAGGAGAAAGTTACAGAATTCGATTTAAGGACTATTGGATTACATAGGA 769
|||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 684 TTACTGTGTCTGAGGAGAAAGTTACAGAATTCGAATTCAGGACTATTGGATTACATAGGA 743
Query 770 GAGCAAAGGGAACGGTTGAGCTATCATCAAGTTATGAAACTAGGACAAGTAG-TATGGAA 828
|| |||||||||||||||||||||||||||||||||||| ||| |||||| | |||||||
Sbjct 744 GACCAAAGGGAACGGTTGAGCTATCATCAAGTTATGAAAGTAGAACAAGT-GATATGGAA 802
Query 829 CATTCGTTAGCAGCCAGGGGAGATCTTTGGAGAGTAGAAGCTTCTACTTCAAATTCCCCT 888
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 803 CATTCGTTAGCAGCCAGGGGAGATCTTTGGAGAGTAGAAGCTTCTACTTCAAGTTCCCCT 862
Query 889 GTGAGAGATGATAGCTCGTCTCTCTTTCTACTCCAGCTTGGACCTCTGTTATTTCTGCGC 948
| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 863 GCAAGAGATGATAGCTCATCTCTCTTTCTACTCCAGCTCGGACCTCTGCTATTTCTGCGC 922
Query 949 GATTCAACTCTTCTTTTGCCTGTTCATTTATCAAAGCAACACTTGCTCTGGTACGGATAT 1008
||||||||||||||| | |||||||||||||||||||||||| | ||||||||||| |||
Sbjct 923 GATTCAACTCTTCTTCTACCTGTTCATTTATCAAAGCAACACATACTCTGGTACGGGTAT 982
Query 1009 GATAGAAAGAAAGGTATGCATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGGTGG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 983 GATAGAAAGAAAGGTATGCATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGATGG 1042
Query 1069 CTTATGATGTCAATGCTCTGCCTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CTTATGATGTCAATGCTCTGCCTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTC 1102
Query 1129 CCAAATGGACAATTAACATATGTTTCTGGTGAGGGATTGACGACAAGTGTCTTTGTTCCT 1188
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1103 CCAAATGGACAATTAACATATGTATCTGGTGAGGGATTGACGACAAGTGTCTTTGTTCCT 1162
Query 1189 TTATGCGGCGGTCTCCTTCAAGCGCAAGGTCAATATCCAGGAGATATGAGATTCAGTTTC 1248
||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1163 TTATGTGGCGGTCTTCTTCAAGCGCAAGGTCAATATCCAGGCGATATGAGATTTAGTTTC 1222
Query 1249 TCTTGCAAGAGTAAACAGGGAACACGAATCACACCGATGA-TAAACTGGCCTGACAAATC 1307
|| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct 1223 TCCTGCAAGAGTAAACAGGGAACACGAATCACACCGAT-AGTAAATTGGCCTGACAAATC 1281
Query 1308 ATTGGCATTGGGTGTTTCTCAAGCCTTGGCTTGGCGTAGGTCCGGTGTCATGTTGAAACC 1367
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1282 ATTCGCATTGGGTGTTTCTCAAGCCTTGGCTTGGCGTAGGTCCGGTCTCATGTTGAAACC 1341
Query 1368 TGCAATTCAACTTAGTGTGTGCTCTACATTTGGTGGAAGCAATCCCGGGATTAAAACCGA 1427
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 TGCAATTCAACTTAGCGTGTGCTCTACATTTGGTGGAAGCAATCCCGGGATTAAAACCGA 1401
Query 1428 AGTTATTCAGTCGTTGAATGATAATATCAATATGATATGTGGCTGTGCATTCACAGCTCA 1487
||||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1402 AGTTATTCACTCGTTGAATGATCACATCAATATGATATGTGGCTGCGCATTCACAGCTCA 1461
Query 1488 TCCTTCAACATTTGCATCTGTTTC-CTTTGGTCGGTCTAAGTGGAATGGGAACATTGGAC 1546
||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 1462 TCCTTCAGCATTTGCATCTGTTTCAC-TTGGTCGGTCCAAGTGGAATGGGAACATTGGAC 1520
Query 1547 GAACAGGAATAGTTGTTAGAGCTGATACTCCTCTTCCAAACGTTGCTCGACCTTCTTTCT 1606
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GAACTGGCATAGTTGTTAGAGCTGATACTCCTCTTCCAAACGTTGCTCGACCTTCTTTCT 1580
Query 1607 CCATTCAGATCAACAATGCTTTCGAGTTCTGAAAATA 1643
|||||||||||||||||||||||||||||||||||||
Sbjct 1581 CCATTCAGATCAACAATGCTTTCGAGTTCTGAAAATA 1617
Score = 568 bits (307), Expect = 8e-161
Identities = 425/477 (89%), Gaps = 27/477 (6%)
Strand=Plus/Plus
Query 191 AGTAGAGTTGCAAAGTTTAATCCTTTGATAAAATCTCCCGAGATTCCGAGTTTGTCTCGC 250
||| ||||||||||||||| ||||||||| |||| | | ||||||||||||||||
Sbjct 120 AGTGGAGTTGCAAAGTTTATTCCTTTGAT-AAAT-T--C-----TCCGAGTTTGTCTCGC 170
Query 251 ATGAGGATTTGAATACCGAAGAAAAAATGTCAGTGGAAAGATCTTTGGAAGCTTGGGAAG 310
||| |||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct 171 ATGTGGATTTGAATACCGAAGAAACAATGTCTGTGGAAAGATCTTTTGAAGCTTGGGAAG 230
Query 311 AAGTTCAGAGACATGGACAAGACTTAGCTGACCGACTTGCTCAGGGCTTTAACGGTTTGA 370
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 231 AAGTTCAGAGACATGGACAAGACTTAGCTGACAGACTTGCTCAGGGCTTTAATGGTTTGA 290
Query 371 TTCAAATCAACCCACCTTCATTTCCAT---CGAAGC--TAT--TT----G--A-TC--T- 413
||||||||||||||||||||||||||| |||| | ||| || | | || |
Sbjct 291 TTCAAATCAACCCACCTTCATTTCCATGGCCGAATCATTATAATTCCAAGCTATTCGATC 350
Query 414 T-GAGTTCTCTAGTCAGCATTTCGGGATTAGGGATTCTAGGTTTTCTATCCACCAACCCA 472
| |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 351 TCGAGTTCTCCGGTCAGCATTTCGGGATTAGGGATTCTAAGTTTTCTATTAACCAACCCA 410
Query 473 TCAATGGCGTTTCGGCTATTCTTGATATTGGGAACAAGATTGGTCAAGCGGGTGTTGATT 532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 411 TCAATGGCGTTTCGGCTATTCTTGATATTGGGAACAAGATTGGTCAAGCTGGTGTTGATT 470
Query 533 TTGGCTCTGGATTGAATGTGATGGTTCAGCAGTTCTTCAGAAGGTTGCCTGTACCGTTCC 592
||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 471 TTGGCGCTGGATTGAATGTGATGGTTCAGCAATTCTTCAGAAGGTTACCAGTACCGTTCC 530
Query 593 GACACGATGAGAACGTGTTTGTTTCTACTGAGAGAGATACTGTCACGAGGAGCCATA 649
|||| || |||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 531 GACATGACGAGAACCCGTCTGTTTCTACTGAGAGAGATACTGTCAGGAGGAGCCATA 587
Score = 355 bits (192), Expect = 7e-97
Identities = 232/252 (92%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 1899 AATAGGCTAACATCTTTGCTCGGATCAGAGAAGGAAGAATCGACCCAAGGACCGTCCATC 1958
|||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1614 AATAAGCTAACATCTTTGCTAGGCTCAGAGAAGGAAGAATCAACCCAAGGACCGTCCATC 1673
Query 1959 GAGGAGGAGCTTTTGTGTTCTTTGTTTCTTGTATAGGTTGAGACTTGTGACTCGCTGTCT 2018
|| |||||||||||||||||| |||| ||||||| ||| || || |||||||||||||||
Sbjct 1674 GATGAGGAGCTTTTGTGTTCTCTGTTGCTTGTATGGGTCGAAACCTGTGACTCGCTGTCT 1733
Query 2019 TGTGACAAATGCTCTAAGGCCTTAAACCTCATTGCGGCTGAACCACTTGGATCAGCTTCA 2078
||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1734 TGTGACAAAAGCTCAAAGGCCTTAAACCTCATTGCAGCTGAACCACTTGGATCAGCTTCA 1793
Query 2079 CGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTGTAGCATACTTACAACAGATGAC 2138
||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||
Sbjct 1794 CGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTCCAACATTCTTACGACAGATGAC 1853
Query 2139 ATCGGTGGTCTC 2150
|| |||||||||
Sbjct 1854 ATTGGTGGTCTC 1865
> Ahg478897 jgi|Araly1|478897|fgenesh2_kg.3__1598__AT3G14830.1
Length=1743
Score = 837 bits (453), Expect = 0.0
Identities = 815/986 (83%), Gaps = 40/986 (4%)
Strand=Plus/Plus
Query 674 ACTCAGCGTTTTCTAAGACAGAT-ACTGCTTCCTCTGGTACTGTGTATGAGGAGAAAGTT 732
|||||| |||||||||||||||| | | || | |||| |||| ||| ||||||| |||||
Sbjct 645 ACTCAGGGTTTTCTAAGACAGATGA-TACTGCTTCTGTTACTATGTCTGAGGAGGAAGTT 703
Query 733 ACAGAATT-CGATTTAAGGACTATTGGATTACATAGG-AGAGCAAAGGGAACGGTTGAGC 790
||| ||| | || |||| ||| |||||| | | || ||| |||||||||| ||||
Sbjct 704 GCAG-ATTCCTATCTAAGAACTGCTGGATTGC-TTGGAAGATCAAAGGGAACAATTGATA 761
Query 791 TATCATCAAGTTATGAAACTAGGACAAGTAGTATGGAACATTCGTTAGCAGCCAGGGGAG 850
| |||||||||||||| | |||||||| | ||||||||||||| || |||||||| ||||
Sbjct 762 TGTCATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAG 821
Query 851 ATCTTTGGAGAGTAGAAGCTTCTAC-TTCAAATTCCCCTGTGAGAGAT-GATAGCTCGTC 908
| || ||||| ||||||||||| || ||| | ||| ||| || ||| || | |||||
Sbjct 822 ACCTCTGGAGGGTAGAAGCTTC-ACATTCGAGTTCTACTGCAAGCGATGGA-AATTCGTC 879
Query 909 TCTCTTTCTACTCCAGCTTGGACCTCTGT-TATTTCTGCGCGATTCAACTCTTCTTTTGC 967
||||||||| |||||||||||||| || | | ||||| ||||||||||| |||||||| |
Sbjct 880 TCTCTTTCTTCTCCAGCTTGGACCACT-TCTCTTTCTACGCGATTCAACGCTTCTTTTAC 938
Query 968 CTGTT-CATTTATCAAAGCAACACTTGCTCTGGTACGGATATGATAGAAAGAAAGGTATG 1026
| ||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 939 C-GTTACACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATG 997
Query 1027 CATTCACTGTGTCCAGCTTTGTGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTC 1086
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 998 CATTCACTCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTC 1057
Query 1087 TGC-CTCAATCCTTTAGATTGCTCATTTGTAGACTTGCAATTCCCAAATGGACAATTAAC 1145
| | ||||||||||||| |||||||||| | || |||||||| ||||| || ||||| ||
Sbjct 1058 T-CTCTCAATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGAC 1116
Query 1146 ATATGTTTCTGGTGAGGGATTGACGACAAGTGTCTTT-GTTCCTTTATGCGGCGGTCTCC 1204
|||||| ||||| || ||| |||||||||||| |||| || ||||| || |||||||| |
Sbjct 1117 ATATGTATCTGGCGAAGGACTGACGACAAGTG-CTTTTGTGCCTTTTTGTGGCGGTCTTC 1175
Query 1205 TTCAAGCGCAAGGTCAATATCCAGGAGATATGAGATTCAGTTTCTCTTGCAAGAGTAAAC 1264
||||||| || |||||||||||||| || |||||||| |||| |||||| |||| ||||
Sbjct 1176 TTCAAGCACAGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAAT 1235
Query 1265 AG-GGAACACGAATCACACCGATGATAAACTGGCCTGACAAATCATTGGCATTGGGTGTT 1323
| ||||| | ||||||||| ||| || | ||||||||||||||||| || |||| | ||
Sbjct 1236 -GTGGAACCCTAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTT 1294
Query 1324 TCTCAAGCCTTGGCTTGGCGTAG-GTCCGGTGT-CATGTTGAAACCTGCAATTCAACTTA 1381
|||||| |||||||||||||||| ||| || | | || ||||||| |||||||| | |
Sbjct 1295 TCTCAACCCTTGGCTTGGCGTAGAGTC-GGACTAC-TGATGAAACCAACAATTCAAGTCA 1352
Query 1382 GTGTGTG-CTCTACATTTGGTGGAAGCAATCCCGGGATTAAAACC-GAAGTTATTCAGTC 1439
|||| || | | |||||||||||||||||||| ||| || ||| | ||||||||||| ||
Sbjct 1353 GTGTATGTCCC-ACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTC 1410
Query 1440 GTTGAATGATAA-TATCAATATGATATGTGGCTGTGCATTCACA-GCTCATCCTTCAACA 1497
||||| ||| | | | ||| | |||||||||| |||| ||| | || ||||||||| ||
Sbjct 1411 GTTGAGCGATGACT-TGAATCTCATATGTGGCTATGCACTCA-ATGCACATCCTTCAGCA 1468
Query 1498 TTTGCATCTGTTTCCTTTGGTCGGTCTAAGTGGAATGGGAACATTGGACGAACAGGAATA 1557
||||| ||||| || ||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct 1469 TTTGCCTCTGTATCTTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATA 1528
Query 1558 GTTGTTAGAGCTGATACTCCTCTTCCAAACGT-T-G-CTC-GACCTTCTTTCTCCATTCA 1613
|||||||||||||||||||||||| ||| || | | | | | ||||| ||||| | ||
Sbjct 1529 GTTGTTAGAGCTGATACTCCTCTTGCAA--GTATCGGC-CAG-CCTTCCTTCTCTGTCCA 1584
Query 1614 GATCAACAATGCTTTCGAGTTCTGAA 1639
| | || || ||| ||||||||||||
Sbjct 1585 GTTTAATAACGCTATCGAGTTCTGAA 1610
> Ahg474473 jgi|Araly1|474473|fgenesh2_kg.1__4427__AT1G53440.1
Length=3114
Score = 484 bits (262), Expect = 8e-136
Identities = 306/328 (93%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 1823 TTACTCAATCTCCACATCAGTAAGATCATCTAACAGTCTCCTCGACGAAGATGATGAATT 1882
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3114 TTACTCAATCTCCACATCGGTAAGATCATCTAACAGTCTCCTCGACGAAGATGATGAATT 3055
Query 1883 TCCTTCTTCTTGCTGTAATAGGCTAACATCTTTGCTCGGATCAGAGAAGGAAGAATCGAC 1942
|||||||||||||||| |||||||||||||||||| || ||||||||||||||||| ||
Sbjct 3054 TCCTTCTTCTTGCTGTTGTAGGCTAACATCTTTGCTAGGCTCAGAGAAGGAAGAATCAAC 2995
Query 1943 CCAAGGACCGTCCATCGAGGAGGAGCTTTTGTGTTCTTTGTTTCTTGTATAGGTTGAGAC 2002
|||||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || ||
Sbjct 2994 CCAAGGACCGTCCATCGATGAGGAGCTTTTGTGTTCTCTGTTGCTTGTATGGGTCGAAAC 2935
Query 2003 TTGTGACTCGCTGTCTTGTGACAAATGCTCTAAGGCCTTAAACCTCATTGCGGCTGAACC 2062
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 2934 CTGTGACTCGCTGTCTTGTGACAAAAGCTCAAAGGCCTTAAACCTCATTGCAGCTGAACC 2875
Query 2063 ACTTGGATCAGCTTCACGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTGTAGCAT 2122
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2874 ACTTGGATCAGCTTCACGTTTCACCAGTGGTGGTTGGACTTTGATTTTTCCTTCCAACAT 2815
Query 2123 ACTTACAACAGATGACATCGGTGGTCTC 2150
||||| ||||||||||| |||||||||
Sbjct 2814 TCTTACGACAGATGACATTGGTGGTCTC 2787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80903680380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5