BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53460.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474476 jgi|Araly1|474476|fgenesh2_kg.1__4430__AT1G53460.1 1587 0.0
> Ahg474476 jgi|Araly1|474476|fgenesh2_kg.1__4430__AT1G53460.1
Length=1074
Score = 1587 bits (859), Expect = 0.0
Identities = 1016/1087 (93%), Gaps = 29/1087 (3%)
Strand=Plus/Plus
Query 3 TCTAAAACCCTTTGCGTCTCTTCTCTAGAGAATCTCTC-GGTTGCTCCAATGGCTGGCTT 61
|||||||||||||||||| | ||||||||||| |||| || |||| ||||||| ||||
Sbjct 1 TCTAAAACCCTTTGCGTCAC-TCTCTAGAGAAGATCTCAGG-TGCTTCAATGGC--GCTT 56
Query 62 ATTGGTTACTATTAATCACTGAATC-TCACAAA-TTGATTTCGCAAGCTGACTCCTTTGA 119
|||| ||| |||||||||||||||| || |||| ||||||||||||||||| | || |||
Sbjct 57 ATTGATTATTATTAATCACTGAATCTTC-CAAATTTGATTTCGCAAGCTGAAT-CTCTGA 114
Query 120 AGCCATGGCGATTCTGCTCAGATCAATTCTCAAAAATCAAACTTTGTTTAAGACTCTCTT 179
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 115 AGCCATGGCGATTCTGCTCAAAACAATTCTCAAAAATCAAACTTTGTTTAAGACTCTCTT 174
Query 180 GAAACCTCA--ATG-CGCGCCTTTGATTGTCTCCAGAAACTTTACATCGGAAGAAGCTTA 236
||||||||| || | ||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 175 GAAACCTCAGTTTGTCTCGCCTTTGATTGTTTCCAGAAACTTTACATCGGAAGAAGCTCA 234
Query 237 TAAGAAGCCACTCTCTGTTTTCTTCGAAGAGGCTGTTGGATTGAGACCCAAATCAGAAAC 296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 235 TAAGAAGCCACTCTCTGTTTTCTTCGAAGAGGCTGTTGGATTAAGACCCAAATCAGAAAC 294
Query 297 GAGCGAAATCgaagaagaagaagaagaagGCAACGAGTTGAAGAGAAAGCTTTTGGAATT 356
|||||||||| |||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 295 GAGCGAAATC---GAAGAAGAAG-AG--GGCAACGAATTGAAGAGAAAGCTTTTGGAATT 348
Query 357 GGAAAGGAAACTCATAGAACTGAAGAAATCGGAACCTGTGAGAAAGAAAAAACAGAA-GG 415
||| |||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 349 GGAGAGGAAACTCATAGAACTGAAGAAATCGGAACCTGTGAGAAAGAAGAAGCACAAGGG 408
Query 416 GAGAGGTTGTGATAT---------CAGAGCAAAACGAGAAAAGGCATAATCTTTACAAGT 466
|| | ||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 409 GA-AAGTTTTGATATCAGAGAAAACAGAGCAAAACGAGAAAAGGAATAATCTTTACAAGT 467
Query 467 TGTTTAAGGGAGATGAAGAGAAAGAGGTAAAGAAACATAGTAAGGAAAAGGAGGACGTAA 526
||||||| |||||||||||||| ||| | ||| ||||||||| ||||||||||||||| |
Sbjct 468 TGTTTAAAGGAGATGAAGAGAAGGAGATGAAGCAACATAGTAGGGAAAAGGAGGACGTGA 527
Query 527 TTAGGGTTTATAAGGAGCTTCCTATAGAGATGGTGTCGTTTGTGAGGCTTCTGCATAAAG 586
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 528 TTAGGGTTTATAAGGAGCTTCCTATAGAGATGGTTTCGTTTGTGAGGCTTCTGCATAAAG 587
Query 587 AAGGGTATTTGAACAAGGCTAATTTCATTACTGGAGAAAAGTTGGATATGGGGAATCTTG 646
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 588 AAGGGTATTTGAACAAGGCTAATTTCATCACTGGAGAAAAGTTAGATATGGGGAATCTTG 647
Query 647 ATGAAGAGTATGCTAGAACTTTTGTTAAGTTTGCTGCCGAAAGATTTGGAAAGGATTACC 706
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ATGAAGAGTATGCTCGAACTTTTGTTAAGTTTGCTGCCGAAAGATTTGGAAAGGATTACC 707
Query 707 AGGAGATAGCAAAGTGGTTATCAGGTAGTGACCTGAAGAAGATTGTGCTCTTTGGTTGCC 766
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 708 AGGAAATAGCAAAGTGGTTATCAGGTAGCGACCTGAAGAAGATTGTGCTCTTTGGTTGCC 767
Query 767 CGAGTTTGGAAAAAAGGGCGGTATTCGCTGCTAAAACATTGCGCAACTTTTTCGATATCC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 CGAGTTTGGAAAAAAGGGCGGTATTCGCTGCTAAAACATTGCGCAACTTTTTCGATATCC 827
Query 827 ATGAGAATAATGTGTGCGAGAAATGCGTGTTAAAAGAGAAGTGCAAGTTTCCAAACCAGA 886
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 ATGAGAATAATGTGTGTGAGAAATGCGTGTTAAAAGAGAAGTGCAAGTTTCCAAACCAGA 887
Query 887 GTGTATGGGATGGCAAAACAAAGCACTTGCACTTGTCTGTTGTGATGAAAGTCATCACAC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GTGTATGGGATGGCAAAACAAAGCACTTGCACTTGTCTGTTGTGATGAAAGTCATCACAC 947
Query 947 TATATCCATTAGACTTGACTCATCCGAAGCTACAAGTTCCTCAAGAGGTACAAGACTCAG 1006
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TATATCCATTGGACTTGACACATCCGAAGCTACAAGTTCCTCAAGAGGTACAAGACTCAG 1007
Query 1007 TTTCAAGATTGCTGACGGAGATTCAGAACCTAAGCCGAACTATCTGTACTCCTCTCGCAT 1066
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 TCTCAAGATTGCTGATGGAGATTCAGAACCTAAGCCGAACTATCTGTACTCCTCTCGCCT 1067
Query 1067 GAGTTAA 1073
|||||||
Sbjct 1068 GAGTTAA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5