BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53470.1
Length=2646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914534 jgi|Araly1|914534|Al_scaffold_0001_4788 4137 0.0
> Ahg914534 jgi|Araly1|914534|Al_scaffold_0001_4788
Length=2643
Score = 4137 bits (2240), Expect = 0.0
Identities = 2519/2653 (95%), Gaps = 21/2653 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGTTGATTC-AACTGATCAACGGCGAGATTTTGTTGT-AAGGATCGACGGTGAAG 58
|||||||||||||| || |||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1 ATGGCCGTTGATTCGAA-TGATCAACGGCGAGATGTTGTTGTCAA-GATCGACGGTGAAG 58
Query 59 ACAATGGTGACTCAGAAAAGTTTTGGAGAGAGTCAAGCATTAACTTCTGGCATAATGATA 118
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 59 ACAATGGTGATTCAGAAAAGTTTTGGAGAGAATCAAGCATTAACTTCTGGCATACTGATA 118
Query 119 AGAGCTCTAAACCACCCGGAGGTGAAGAAGACGACGGAAGCTTTGATTTCATGCGGCGGA 178
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 119 AGAGCTCTAAACCACCCGGAGGTGGAGAAGACGACGGAAGTTTTGATTTCATGCGGCGGA 178
Query 179 GTAGTGAGAAATCGGAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGAGTGATAAATCAAAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238
Query 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298
Query 299 aaaaaaaTACGGTTCCTCCTCTGTCGTCAACG-GCAGTTTCCGGTTCTGCTTCACCAGTA 357
||| || ||| ||||| | | ||| | | ||||||||||| |||||||||||||||
Sbjct 299 AAAGCAACACGATTCCT-C-C-GTCCT-TGGGTGCAGTTTCCGGCTCTGCTTCACCAGTA 354
Query 358 ACCGCGCCAG-TGACGGCGAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 416
|| ||| | | | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ACGGCGACGGCT-ACGGCAAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 413
Query 417 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATGGTGATAGTAGTGAAGATGAAGAAAA 476
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 414 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATAGTGATAGTAGTGGAGATGAAGAAAA 473
Query 477 CAGAGTAGATGGATCAGAGGTTGTGAAGTGTACCTCTAATAGATCGACGATGAGGACTAA 536
|||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 474 CAGAGTAGATGGATTAGAGGTTGTCAAGTGTAGCTCCAATAGATCGACGATGAGGACTAA 533
Query 537 GACTTTGATGAAGATGAAGACTAGATCTAGATTGATGGATCCTCCTACTCCGACGTATCC 596
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 GACTTTGATGAAGACGAAGACTAGATCTAGATTGATGGATCCTCCAACTCCGACGTATCC 593
Query 597 GGATATGGTTTCGGGTCGGACTCCAAGGTCCGGGAATC-TAAATCCCGGGTTTAGTGGGA 655
||| |||||||| ||||||||||||| ||||||||| | |||| ||||| ||||||||||
Sbjct 594 GGAGATGGTTTCTGGTCGGACTCCAAAGTCCGGGAA-CTTAAAACCCGGTTTTAGTGGGA 652
Query 656 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGATCCAAGGATTTGGAAGAAGAGGAAG 715
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 653 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGAGCCATGGATTTGGAAGAAGAGGAAG 712
Query 716 ATCCCTTCTCAGAGGAGGATTTACCTGAAGGTTTAAGGAAGGAGAAGATT-TGTGTTTGG 774
|||| ||||| |||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 713 ATCCTTTCTCGGAGGAGGATTTACCGGAAGGTTTAAGGAAGGAGAAG-TTATGTGTTTGG 771
Query 775 GTTATTATAGAATGGATATTTCTGATTTTGATCATTGCTAGTTTGATTTGTAGCCTAGTC 834
|||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 772 GTTATTATGGAATGGATTTTTCTGATTCTGATCATTGCTGGTTTGATTTGTAGCCTTGTT 831
Query 835 ATACCTTACTTGCGTGGCAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 894
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATACCTTACTTGCGTGGTAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 891
Query 895 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCTAGTTGGATTGTGAAGCTATTCGTTTAC 954
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 892 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCGAGTTGGTTTGTGAAGCTATTCGTCTAC 951
Query 955 TTCGTTGAAAGCAATTTTCTTTGGAGGAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1014
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 952 TTTGTCGAAAGCAATTTTCTTTGGAGAAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1011
Query 1015 AAGCCGGTGCAGAATTGTCTATGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1074
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AAGGCGGTACAGAATTGTCTTTGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1071
Query 1075 GACAAGAAAGTTGAAAGAGAGATGCGAAGTACTGTGCTTAAGTATGTGACTAAAGTATTA 1134
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1072 GACAAGAAAGTAGAAAGAGAGATGCGAAGCACTGTGCTTAAGTATGTGACTAAAGTGTTA 1131
Query 1135 ATCTGTTTACTTGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1194
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ATTTGTCTACTCGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1191
Query 1195 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGGATTCAAGAATCGTTGTTTACTCAA 1254
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1192 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGAATTCAAGAATCGTTGTTTACTCAA 1251
Query 1255 TACGTGATTGAGACGCTCTCGGGACCTCCTCGTATTGAGATTCATATAGAAGAGGAGAAA 1314
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1252 TATGTGATTGAGACTCTCTCGGGACCTCCTCGCATTGAGATTCATATAGAAGAGGAGAAA 1311
Query 1315 GTAGCAAATGATGTTAAA-ACCTTCGAGATAGTTGGACGTAAGCTATCTCCTCTAGGTCC 1373
|||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1312 GTAGCAAACGAT-ATAAAGACCTTCGAGATAGCGGGACGTAAGCTATCTCCTCTAGGTCC 1370
Query 1374 AAAGGCGGTTTCTTCTCCACCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1433
|||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 AAAGGCGGCTTCTTCTTCGCCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1430
Query 1434 AAGCAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTCTGGTTCTAAGAAAGAAGGAGGGGA 1493
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1431 AAGTAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTGTGGTTCTAAGAAAGAAGGAGAGAA 1490
Query 1494 AGAAGGGATACGGATCGATCATTTGCAGAGAATGAACACTAAGAACGTTTCAGCTTGGAA 1553
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1491 AGAAGGGATAAGGATCGATCATTTGCAGAGAATGAACACTAAAAACGTTTCAGCTTGGAA 1550
Query 1554 AATGAAGAAACTGATGAATGTTATCAA-AAAAGGAACTCTTTCTACTTTAGATGAACAGA 1612
|||||||| |||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 1551 AATGAAGAGGCTGATGAATGTTAT-AAGAAAAGGAACTCTTTCTACTTTGGATGAACAGA 1609
Query 1613 TACAAGACACGACGACTCAGGAAGATGATAAGGCCACACAGATAAGAAGTGAATTCGAAG 1672
|||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1610 TACAGGACACGACGACTCAAGAAGATGATAAAGCCACACAAATAAGAAGTGAATTTGAAG 1669
Query 1673 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1729
Query 1733 ATATGGAAGACTTTATGCGTTTTCTGTCCGAAGATGAGTCTGAAAGAGCAATGGATCTAT 1792
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1730 ATATGGAAGACTTTATGCGTTTTCTGTCAGAAGATGAGTCTGAAAGAGCAATGGATCTCT 1789
Query 1793 TTGAAGGAGCTTCTGAATGTCACAAAATCAGCAAATCTTGTCTGAAGAATTGGGTGGTTA 1852
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1790 TTGAAGGAGCTTCTGAAAGTCACAAAATCAGTAAATCTTGTCTGAAGAATTGGGTGGTTA 1849
Query 1853 ATGCCTTTAGAGAACGAAGAGCACTAGCTTTAACATTAAACGATACAAAAACAGCAGTGA 1912
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1850 ATGCTTTTAGAGAACGAAGAGCACTAGCTCTAACATTAAACGATACAAAAACAGCAGTGA 1909
Query 1913 ACAGGCTTCATCGAATCGTTGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1972
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 ACAGGCTTCATCGAATCGTCGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1969
Query 1973 TCATTCTGGGAATCGCTACAACCAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2032
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1970 TCATTCTCGGAATCGCTACAACTAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2029
Query 2033 TAGTCTTTGTGTTTGGAAATTCATGTAAAACCATCTTTGAAGCGGTCATCTTCGTCTTCG 2092
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 2030 TAGTCTTTGTGTTTGGAAATTCATGCAAAACCATCTTTGAAGCTGTCATTTTCGTCTTCG 2089
Query 2093 TTATGCATCCATTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGATGATTGTGG 2152
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2090 TTATGCATCCGTTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGCTGATTGTGG 2149
Query 2153 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2209
Query 2213 CAAACAGTCTTCTCGGAACAAAACCTATCGCTAACTATTACCGCAGTCCTGATATGCAAG 2272
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2210 CCAACAGTCTTCTCGGTACAAAACCTATCGCTAACTATTACCGCAGTCCCGATATGCAAG 2269
Query 2273 ATGCCATTGAATTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACTGCCTT-AAGA 2331
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 2270 ATGCCATTGAGTTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACCGCCTTGAA-A 2328
Query 2332 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATT 2391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATC 2388
Query 2392 GTGTTTAGAGATATGTGTGGATTAAACAGTGTGAAGATCGCAATGTGGCCAACACATAAG 2451
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2389 GTGTTTAGAGATATGTGTGGACTAAACAGTGTGAAGATCGCGATGTGGCCAACACATAAG 2448
Query 2452 ATGAATCATCAAAATATGGGAGAGAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2511
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2449 ATGAATCATCAAGATATGGGAGAAAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2508
Query 2512 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2568
Query 2572 AAAAGTCTTCCTGCTGCTACTCCCATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2631
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2569 AAAAGTCTTCCTGCTGCTACTCCGATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2628
Query 2632 CAACGCAGTGTTT 2644
|||||||||||||
Sbjct 2629 CAACGCAGTGTTT 2641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99796441900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5