BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53470.1 Length=2646 Score E Sequences producing significant alignments: (Bits) Value Ahg914534 jgi|Araly1|914534|Al_scaffold_0001_4788 4137 0.0 > Ahg914534 jgi|Araly1|914534|Al_scaffold_0001_4788 Length=2643 Score = 4137 bits (2240), Expect = 0.0 Identities = 2519/2653 (95%), Gaps = 21/2653 (1%) Strand=Plus/Plus Query 1 ATGGCCGTTGATTC-AACTGATCAACGGCGAGATTTTGTTGT-AAGGATCGACGGTGAAG 58 |||||||||||||| || |||||||||||||||| ||||||| || |||||||||||||| Sbjct 1 ATGGCCGTTGATTCGAA-TGATCAACGGCGAGATGTTGTTGTCAA-GATCGACGGTGAAG 58 Query 59 ACAATGGTGACTCAGAAAAGTTTTGGAGAGAGTCAAGCATTAACTTCTGGCATAATGATA 118 |||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 59 ACAATGGTGATTCAGAAAAGTTTTGGAGAGAATCAAGCATTAACTTCTGGCATACTGATA 118 Query 119 AGAGCTCTAAACCACCCGGAGGTGAAGAAGACGACGGAAGCTTTGATTTCATGCGGCGGA 178 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 119 AGAGCTCTAAACCACCCGGAGGTGGAGAAGACGACGGAAGTTTTGATTTCATGCGGCGGA 178 Query 179 GTAGTGAGAAATCGGAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238 | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GGAGTGATAAATCAAAGGAGCCAGATCCACCGTCGAAGCTTATAAATCAATTTCTCAACA 238 Query 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AGCAAAAAGCTTCCGGTGATGAAATCTCTCTCGACATGGAAGCTAACATGCCTGAGCTTC 298 Query 299 aaaaaaaTACGGTTCCTCCTCTGTCGTCAACG-GCAGTTTCCGGTTCTGCTTCACCAGTA 357 ||| || ||| ||||| | | ||| | | ||||||||||| ||||||||||||||| Sbjct 299 AAAGCAACACGATTCCT-C-C-GTCCT-TGGGTGCAGTTTCCGGCTCTGCTTCACCAGTA 354 Query 358 ACCGCGCCAG-TGACGGCGAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 416 || ||| | | | ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 355 ACGGCGACGGCT-ACGGCAAGTTATCGTAATGGAACCGGTGATGCGATTAGACGGAGACA 413 Query 417 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATGGTGATAGTAGTGAAGATGAAGAAAA 476 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 414 GAACAGAGTCACGCTTTCTCCGTCTGTTAAAGATAGTGATAGTAGTGGAGATGAAGAAAA 473 Query 477 CAGAGTAGATGGATCAGAGGTTGTGAAGTGTACCTCTAATAGATCGACGATGAGGACTAA 536 |||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct 474 CAGAGTAGATGGATTAGAGGTTGTCAAGTGTAGCTCCAATAGATCGACGATGAGGACTAA 533 Query 537 GACTTTGATGAAGATGAAGACTAGATCTAGATTGATGGATCCTCCTACTCCGACGTATCC 596 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 534 GACTTTGATGAAGACGAAGACTAGATCTAGATTGATGGATCCTCCAACTCCGACGTATCC 593 Query 597 GGATATGGTTTCGGGTCGGACTCCAAGGTCCGGGAATC-TAAATCCCGGGTTTAGTGGGA 655 ||| |||||||| ||||||||||||| ||||||||| | |||| ||||| |||||||||| Sbjct 594 GGAGATGGTTTCTGGTCGGACTCCAAAGTCCGGGAA-CTTAAAACCCGGTTTTAGTGGGA 652 Query 656 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGATCCAAGGATTTGGAAGAAGAGGAAG 715 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 653 GAAACACTAAACCGGGAACTCCAAACCAAGGAGGAGCCATGGATTTGGAAGAAGAGGAAG 712 Query 716 ATCCCTTCTCAGAGGAGGATTTACCTGAAGGTTTAAGGAAGGAGAAGATT-TGTGTTTGG 774 |||| ||||| |||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct 713 ATCCTTTCTCGGAGGAGGATTTACCGGAAGGTTTAAGGAAGGAGAAG-TTATGTGTTTGG 771 Query 775 GTTATTATAGAATGGATATTTCTGATTTTGATCATTGCTAGTTTGATTTGTAGCCTAGTC 834 |||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| || Sbjct 772 GTTATTATGGAATGGATTTTTCTGATTCTGATCATTGCTGGTTTGATTTGTAGCCTTGTT 831 Query 835 ATACCTTACTTGCGTGGCAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 894 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 832 ATACCTTACTTGCGTGGTAAGACACTTTGGGACCTAGCTCTATGGAAATGGGAAGTGATG 891 Query 895 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCTAGTTGGATTGTGAAGCTATTCGTTTAC 954 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| Sbjct 892 GTTCTTGTCTTGATATGTGGGAGATTGGTTTCGAGTTGGTTTGTGAAGCTATTCGTCTAC 951 Query 955 TTCGTTGAAAGCAATTTTCTTTGGAGGAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1014 || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 952 TTTGTCGAAAGCAATTTTCTTTGGAGAAAAAAGGTTTTGTATTTCGTTTACGGGATTCGA 1011 Query 1015 AAGCCGGTGCAGAATTGTCTATGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1074 ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1012 AAGGCGGTACAGAATTGTCTTTGGCTAGGGCTTGTGTTGATCGCATGGCATTTCTTGTTC 1071 Query 1075 GACAAGAAAGTTGAAAGAGAGATGCGAAGTACTGTGCTTAAGTATGTGACTAAAGTATTA 1134 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1072 GACAAGAAAGTAGAAAGAGAGATGCGAAGCACTGTGCTTAAGTATGTGACTAAAGTGTTA 1131 Query 1135 ATCTGTTTACTTGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1194 || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1132 ATTTGTCTACTCGTTGCTGTTATCATCTGGCTCATAAAGACTTTACTGGTTAAAGTTCTT 1191 Query 1195 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGGATTCAAGAATCGTTGTTTACTCAA 1254 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1192 GCTTCCTCTTTCCATATGAGTACTTACTTCGATCGAATTCAAGAATCGTTGTTTACTCAA 1251 Query 1255 TACGTGATTGAGACGCTCTCGGGACCTCCTCGTATTGAGATTCATATAGAAGAGGAGAAA 1314 || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1252 TATGTGATTGAGACTCTCTCGGGACCTCCTCGCATTGAGATTCATATAGAAGAGGAGAAA 1311 Query 1315 GTAGCAAATGATGTTAAA-ACCTTCGAGATAGTTGGACGTAAGCTATCTCCTCTAGGTCC 1373 |||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 1312 GTAGCAAACGAT-ATAAAGACCTTCGAGATAGCGGGACGTAAGCTATCTCCTCTAGGTCC 1370 Query 1374 AAAGGCGGTTTCTTCTCCACCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1433 |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1371 AAAGGCGGCTTCTTCTTCGCCACAAGTGACTGTTGGAAGCGGAAGGCTGCAGAAGAGTCC 1430 Query 1434 AAGCAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTCTGGTTCTAAGAAAGAAGGAGGGGA 1493 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 1431 AAGTAGAGTTGGGAAAAGTCCGGTGCTTTCGCGGTGTGGTTCTAAGAAAGAAGGAGAGAA 1490 Query 1494 AGAAGGGATACGGATCGATCATTTGCAGAGAATGAACACTAAGAACGTTTCAGCTTGGAA 1553 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1491 AGAAGGGATAAGGATCGATCATTTGCAGAGAATGAACACTAAAAACGTTTCAGCTTGGAA 1550 Query 1554 AATGAAGAAACTGATGAATGTTATCAA-AAAAGGAACTCTTTCTACTTTAGATGAACAGA 1612 |||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||| Sbjct 1551 AATGAAGAGGCTGATGAATGTTAT-AAGAAAAGGAACTCTTTCTACTTTGGATGAACAGA 1609 Query 1613 TACAAGACACGACGACTCAGGAAGATGATAAGGCCACACAGATAAGAAGTGAATTCGAAG 1672 |||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||| Sbjct 1610 TACAGGACACGACGACTCAAGAAGATGATAAAGCCACACAAATAAGAAGTGAATTTGAAG 1669 Query 1673 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1670 CAAAACTTGCAGCGAGGAAGATTTTTCAGAATGTTGCTGAGCCTGGATCCAGGTACATAT 1729 Query 1733 ATATGGAAGACTTTATGCGTTTTCTGTCCGAAGATGAGTCTGAAAGAGCAATGGATCTAT 1792 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1730 ATATGGAAGACTTTATGCGTTTTCTGTCAGAAGATGAGTCTGAAAGAGCAATGGATCTCT 1789 Query 1793 TTGAAGGAGCTTCTGAATGTCACAAAATCAGCAAATCTTGTCTGAAGAATTGGGTGGTTA 1852 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 1790 TTGAAGGAGCTTCTGAAAGTCACAAAATCAGTAAATCTTGTCTGAAGAATTGGGTGGTTA 1849 Query 1853 ATGCCTTTAGAGAACGAAGAGCACTAGCTTTAACATTAAACGATACAAAAACAGCAGTGA 1912 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1850 ATGCTTTTAGAGAACGAAGAGCACTAGCTCTAACATTAAACGATACAAAAACAGCAGTGA 1909 Query 1913 ACAGGCTTCATCGAATCGTTGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1972 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1910 ACAGGCTTCATCGAATCGTCGATGTATTGGTCAGCATTGTGATTTTAATCATCTGGCTTC 1969 Query 1973 TCATTCTGGGAATCGCTACAACCAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2032 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1970 TCATTCTCGGAATCGCTACAACTAAGTTCTTGCTTGTCATAAGCTCTCAGCTTCTTCTTG 2029 Query 2033 TAGTCTTTGTGTTTGGAAATTCATGTAAAACCATCTTTGAAGCGGTCATCTTCGTCTTCG 2092 ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 2030 TAGTCTTTGTGTTTGGAAATTCATGCAAAACCATCTTTGAAGCTGTCATTTTCGTCTTCG 2089 Query 2093 TTATGCATCCATTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGATGATTGTGG 2152 |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2090 TTATGCATCCGTTTGATGTCGGTGACAGGTGTGAAATAGACGGTGTCCAGCTGATTGTGG 2149 Query 2153 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2150 AAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATC 2209 Query 2213 CAAACAGTCTTCTCGGAACAAAACCTATCGCTAACTATTACCGCAGTCCTGATATGCAAG 2272 | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 2210 CCAACAGTCTTCTCGGTACAAAACCTATCGCTAACTATTACCGCAGTCCCGATATGCAAG 2269 Query 2273 ATGCCATTGAATTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACTGCCTT-AAGA 2331 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 2270 ATGCCATTGAGTTCTTTGTCCATATAGCAACTCCACCTGAAAAGACAACCGCCTTGAA-A 2328 Query 2332 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATT 2391 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2329 CAGAGGATACTCAGCTATGTAGATAACAAGAAGGATCATTGGCATCCATCGCCGATGATC 2388 Query 2392 GTGTTTAGAGATATGTGTGGATTAAACAGTGTGAAGATCGCAATGTGGCCAACACATAAG 2451 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 2389 GTGTTTAGAGATATGTGTGGACTAAACAGTGTGAAGATCGCGATGTGGCCAACACATAAG 2448 Query 2452 ATGAATCATCAAAATATGGGAGAGAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2511 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2449 ATGAATCATCAAGATATGGGAGAAAGATATGTGAGGAGAGGTCAATTACTTGAAGAGATT 2508 Query 2512 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2509 GGTAGATTATGCAGAGAGTTGGATATCGAATATCGGTTATATCCTCTTAACATCAACGTA 2568 Query 2572 AAAAGTCTTCCTGCTGCTACTCCCATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2631 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2569 AAAAGTCTTCCTGCTGCTACTCCGATCACTTCTGATCGCATTCCTCCTAGCTGGAATCAA 2628 Query 2632 CAACGCAGTGTTT 2644 ||||||||||||| Sbjct 2629 CAACGCAGTGTTT 2641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99796441900 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5