BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53490.1
Length=2252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914535 jgi|Araly1|914535|Al_scaffold_0001_4789 1552 0.0
Ahg475803 jgi|Araly1|475803|fgenesh2_kg.2__933__AT1G53480.1 396 4e-109
> Ahg914535 jgi|Araly1|914535|Al_scaffold_0001_4789
Length=912
Score = 1552 bits (840), Expect = 0.0
Identities = 887/910 (97%), Gaps = 2/910 (0%)
Strand=Plus/Plus
Query 1197 ATGAGATGCAACGCGTGTTGGAGGGACCTGGAGGGCAGGGCCATTTCCACCACTTGCGGT 1256
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGATGCAACGCGTGTTGGAGGGATCTGGAGGGCAGGGCCATTTCCACCACTTGCGGT 60
Query 1257 CACTTATTATGTACTGAAGATGCCAGCAAGATTCTCAGTAATGATGGGGCATGTCCCATT 1316
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACTTATTATGCACTGAAGATGCCAGCAAGATTCTCAGTAATGATGGGGCATGTCCCATT 120
Query 1317 TGTGATCAAGTACTCTCCAAGAGTTTAATGAAACCTGTGGATATCAATCCAAATGAAGAA 1376
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TGTGATCAAGTACTCTCCAAGAGTCTAATGAAACCTGTGGATATCAATCCAAATGAAGAA 180
Query 1377 TGGATAAATATGGCGATGGCTGGAATTTCTCCACAAATACTGATGAAGAGTGCATACCGA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGATAAATATGGCGATGGCTGGAATTTCTCCACAAATACTGATGAAGAGTGCATACCGA 240
Query 1437 AGTGTAATGTTTTACATTGCCCAAAGAGACTTAGAGATGCAGTACAAGATGAATAGAGTT 1496
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AGTGTAATGTTTTACATTGCCCAAAGGGACTTAGAGATGCAGTACAAGATGAATAGAGTT 300
Query 1497 GTTGCACAGTGTCGTCAGAAATGTGAGGGTATGCAAGCAAAGTTTAGCGAGAAAATGGAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGCACAGTGTCGTCAGAAATGTGAGGGTATGCAAGCAAAGTTTAGCGAGAAAATGGAG 360
Query 1557 CAGGTCCATACAGCATATCAGAAGATGGGCAAGAGGTGTCAGATGATGGAGCAAGAGGTA 1616
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGGTGCATACAGCATACCAGAAGATGGGCAAGAGGTGTCAGATGATGGAGCAAGAGGTA 420
Query 1617 GAAAACTTGACCAAGGATAAGCAAGAGCTCCAAGAGAAGTTCTCTGAGAAATCAAGACAG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAAACTTGACCAAGGATAAGCAAGAGCTCCAAGAGAAGTTCTCTGAGAAATCAAGACAG 480
Query 1677 AAGAGGAAGCTTGATGAGATGTATGACCAGCTAAGAAGTGAGTATGAGTCAGTTAAACGT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AAGAGGAAGCTTGATGAGATGTATGACCAGCTAAGAAGTGAGTATGAGTCAGTCAAACGT 540
Query 1737 ACAGCCATCCAACCAGCAAACAACTTCTACCCGCGACACCAAGAACCCGACTTTTTCTCA 1796
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 ACAGCCATCCAACCAGCAAACAACTTCTATCCGCGACACCAAGAACCCGACTTTTTCTCT 600
Query 1797 AACCCAGCAGTTAATATGATGGAGAACAGAGAGACCATTCGCAAAGACCGGTCGTTTTTC 1856
|||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 601 AACCCAGCAGTTAACATGATGGAGAACAGAGAGCCCATTCGCAAAGACCGCTCGTTTTTC 660
Query 1857 TCTCCTGCAACACCAGGACCTAAAGATGAGATATGGCCAGCAAGACAGAACAGTTCAAAC 1916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTCCTGCAACACCAGGACCTAAAGATGAGATATGGCCAGCAAGACAGAACAGTTCAAAT 720
Query 1917 TCAGGTCCATTCGACATCTCCACCGACTCACCTGCGATTCCATCCGATCTTGGAAACAGA 1976
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 721 TCGGGTCCATTCGACATCTCCACTGACTCACCCGCGATTCCATCCGATCTTGGAAACAGA 780
Query 1977 AGAGCTGGCAG-AGGACATCCTGTATACGGTGGTGGTGGCACTGCTAATCCCCAGTCAAC 2035
||||| || || ||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 781 AGAGCAGG-AGGAGGACATCCTGTATATGGTGGTGGTGGCACTTCTAATCCCCAGTCAAC 839
Query 2036 TCTACGAAACCTTATTCTCTCCCCTATTAAACGTTCTCAGCTCTCTCGTTCCCGCCCTCA 2095
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TCTACGAAACCTTATTCTCTCCCCTATTAAGCGTTCTCAGCTCTCTCGTTCCCGCCCTCA 899
Query 2096 GCTGTTCACG 2105
|||||||||
Sbjct 900 ACTGTTCACG 909
> Ahg475803 jgi|Araly1|475803|fgenesh2_kg.2__933__AT1G53480.1
Length=408
Score = 396 bits (214), Expect = 4e-109
Identities = 249/266 (94%), Gaps = 2/266 (1%)
Strand=Plus/Minus
Query 427 CCAAGCTCG-AAAACCACGATCCGCCTACCTCTGTACCTTCTTAACACTGAGCCACCACT 485
||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| || |
Sbjct 282 CCAAGCTCGAAAAACCACGATTCGCCTACCTCTGTCCCTTCTTAACACTGAGCCGCCGCC 223
Query 486 ACCAAGGAGGTTCATCGGAGGAGAGGTACCTCCGCGAAGAGACTGACGAAGAAATCCACC 545
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 ACCAAAGAGGCTCATCGGAGGAGAGGTACCTCCGCGAAGAGACTGACGAAGAAATCCACC 163
Query 546 AGATCTGCTGCCGTCGTCGAGAGTCATAGTTCCCCATTGTAGATCTACCAACGAACCTCC 605
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 162 AGATCTGCTGCCGTCGTCGAGAGTTATAGTTCCCCATTGTAGATCCACCAACGAACCTCC 103
Query 606 ATCTGAGAGAACTATCTCCGCTCGCCGTCGACTTAAAACTCTTTGATTAAGCCACAAAGA 665
|||||||| ||||| ||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 102 ATCTGAGAAAACTACCTCTGCTCGCCGTCGACTTAAAAGTCTCTGATTAAGCCACAAAGA 43
Query 666 AGGAGGAGCCGCCGCCGGCTaaaaaa 691
|||| ||||||||||||| |||||||
Sbjct 42 AGGAAGAGCCGCCGCCGG-TAAAAAA 18
Score = 193 bits (104), Expect = 6e-48
Identities = 114/119 (96%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210 CTAATCCGACTGATACTCAACCGGATCAACCGGGCTGAGACAAAAATTTCTTGAAGTCGA 269
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 408 CTAATCCGACTGATACTCAACCGGATTAACCGGGCTGAGACAAAAATTTCTTGAAGCCGG 349
Query 270 GGCTTTATTGGAGAGCTTTCCTTCTTCTTCTACAATCCAAATGGTTTTCTTTTCTCCCC 328
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 348 GGCATTATTGGAGAGCTTTCCTTCTTCTTCTACAATCCAAATGGTTTTCTTATCTCCCC 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84788885370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5