BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53520.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474480 jgi|Araly1|474480|fgenesh2_kg.1__4434__AT1G53520.1 1441 0.0
> Ahg474480 jgi|Araly1|474480|fgenesh2_kg.1__4434__AT1G53520.1
Length=929
Score = 1441 bits (780), Expect = 0.0
Identities = 883/932 (95%), Gaps = 10/932 (1%)
Strand=Plus/Plus
Query 1 AAAGTTCGGACACTTAGGATTTATCGCCGGAG-TTTTGAACATGGATGGGATTCTTGCAG 59
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1 AAAGTTCGAACACTTAGGATTTATCGCCGGAGTTTTTGAACATGGACGGGATTCTTGCAG 60
Query 60 CTGTTCCATCT-GCAGTGTGTGTCTCTCTACGCATTTCTTGTCGGAATCTGGATAATGCT 118
||||||||| | ||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 61 CTGTTCCAT-TGGCAATGTGTGTCTCTCTACGCAGTTCTTGTCGGAATCGGGATAATGCT 119
Query 119 GAATCCATCTATCATTTTCCCGGCAAATCCTTGAATCGAGTTTCAGTGCTTCAAACTGGG 178
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 GAATCCATATATCATTTTCCCGGCAAATCCTCGAATCGAGTTTCAGTGCTTCAAACTGGG 179
Query 179 AACTACGTCTC-TCGT-AAAG--GCAATTCGTTGCTTAAAAACCGACATTGTGGTGAAAT 234
|||||||| || || | |||| ||||||||||||||||||| |||||||| |||||||
Sbjct 180 AACTACGTTTCTTC-TCAAAGATGCAATTCGTTGCTTAAAAAGCGACATTGCAGTGAAAT 238
Query 235 TTCCCGTGTGATCGTAAAATCCGCCGCTTCTTCAGTTGGAAATGCAGAGGACTACGCTGA 294
|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 239 TTCCCGTGTGATCGTAAAATCCGCCGCTTCTTCAGTTGGAAATGTAGACGAGTACGCTGA 298
Query 295 AGAAACGGCTACAAGTGTAAAGTTTAAGAGATCAGTGACATTACCGGGTTGTTCTAGCCC 354
|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||
Sbjct 299 AGAAACGGCTACAAGTGTAAGGTTTCAGAGATCAGTGACATTACCTGGTTGTTCTAGCCC 358
Query 355 GTTGTCTTTGCTCGGCACTGGGTTTAGGGAGAAAAAGTTTGCTATCATCGGTGTCAAAGT 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTGTCTTTGCTTGGCACTGGGTTTAGGGAGAAAAAGTTTGCTATCATCGGTGTCAAAGT 418
Query 415 CTATGCTGCGGGTTATTATGTGAATGAATCTATCTTGAGCGGGTTAAGCGCTTGGACAGG 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 419 CTATGCTGCGGGTTATTATGTGAATGAATCTATCTTGAGCGGGTTAAGCGCTTGGAAAGG 478
Query 475 GCGATCTGCTGATGAGATCCAAAGAGATTCATCACTGTTT-GTTTCCATTTTCCAAGCTC 533
| | ||||||||||||||||| |||||||||||||||||| ||| ||||||| |||||||
Sbjct 479 GAGGTCTGCTGATGAGATCCAGAGAGATTCATCACTGTTTAGTT-CCATTTTTCAAGCTC 537
Query 534 AAGCAGAGAAATCGTTGCAGATTGTTCTTGTGAGAGATGTTGATGGTAAAACCTTCTGGG 593
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 AAGCAGAGAAATCGTTGCAGATTGTTCTTGTCAGAGATGTTGATGGTAAAACCTTCTGGG 597
Query 594 ATGCATTGGATGAAGCCATTTCACCGAGAATCAAATCTCCATCTTCTGAGGATACAACTG 653
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 598 ATGCTTTGGATGAAGCCATTTCACCGAGAATCAAATCTCCATCTTCTGATGATACAACCG 657
Query 654 CTCTCTCTACATTCCGTGGGATTTTCCAAAACAGACCTCTCAACAAAGGAAGTGTCATAC 713
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 658 CCCTCTCTACATTCCGCGGGATCTTCCAAAACAGACCTCTCAACAAAGGAAGTGTCATAC 717
Query 714 TCTTGACTTGGATCAACACTTCTAATATGCTTGTTTCTGTTTCGTCGGGAGGATTACCAA 773
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 718 TCTTGACTTGGATCAACACTTCTAAAATGCTTGTTTCTGTTTCTTCGGGAGGATTGCCAA 777
Query 774 CGAATGTGGATGCAACGATCGAGTCAGGTAATGTTACATCTGCTCTGTTTGATGTGTTCT 833
|| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 778 CGGATGTGGATGCAACAATCGAGTCAGGTAATGTTACATCTGCTCTATTTGATGTGTTCT 837
Query 834 TTGGGGATTCTCCAGTTTCTCCTACATTGAAATCCTCAGTGGCTAACCAATTAGCCATGA 893
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 838 TTGGGGATTCTCCAGTTTCTCCTACATTGAAATCCTCAGTAGCTAACCAATTAGCTATGA 897
Query 894 CCCTAGTGTAAAAGTAAAGACCATGTTGTAAT 925
|||| |||||||||||||||||||||||||||
Sbjct 898 CCCTTGTGTAAAAGTAAAGACCATGTTGTAAT 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5