BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53530.1 Length=916 Score E Sequences producing significant alignments: (Bits) Value Ahg923905 jgi|Araly1|923905|scaffold_105186.1 843 0.0 > Ahg923905 jgi|Araly1|923905|scaffold_105186.1 Length=547 Score = 843 bits (456), Expect = 0.0 Identities = 511/538 (95%), Gaps = 2/538 (0%) Strand=Plus/Plus Query 95 gagagagagaTGAGAATGACATTTTTGAGTTATCTGAAGCAATGGCGTGGAACAGCGAAA 154 |||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||| Sbjct 12 GAGAGAGAGATGAGTATGAGATTGTTGAGTTTTCTGAAGCAATGGCGTGGAACAGCGAAA 71 Query 155 GAAGCATTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACCGAT 214 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 72 GAAGCGTTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACTGAT 131 Query 215 CGATACATAATCTCCACGACCCACGTTCACGGGCCGAGCATGCTTCCGACGCTTAATCTA 274 || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 132 CGTTACATAATCTCCACGACTCACGTTCACGGACCGAGCATGCTTCCGACGCTTAATCTA 191 Query 275 ACCGGCGATGTAATATTGGCGGAACATTTATCACACCGGTTTGGTAAGATTGGACTCGGT 334 |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 192 ACCGGCGATGTAATTTTGGCGGAACATTTATCACATCGGTTTGGTAAGATTGGGCTCGGT 251 Query 335 GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAAAAGGATGGTGACAAAGCGAATCTTG 394 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 252 GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAACAGGATGGTGACAAAGCGAATCTTG 311 Query 395 GGTTTAGAAGGCGATAGACTCACTTTTTCTGCTGACCCATTGGTCGGTGATGCTTCAGTG 454 |||||||||||||||||||||||||| |||||||||||||||||||||||||| || || Sbjct 312 GGTTTAGAAGGCGATAGACTCACTTTCTCTGCTGACCCATTGGTCGGTGATGCCTCGGTC 371 Query 455 AGCGTTTTGGTTCCGAAAGGTCATGTTTGGATTCAGGGAGATAACTTGTATGCTTCAACT 514 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 372 AGCGTTTTGGTTCCAAAAGGTCATGTTTGGATTCAGGGAGATAACTTATATGCTTCAACG 431 Query 515 GATTCACGTCATTTTGGGCCTGTACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTACGG 574 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| Sbjct 432 GATTCACGTCATTTTGGACCTATACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTTCGG 491 Query 575 GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATTATATACACATACACATT 632 |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| Sbjct 492 GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATCAGATACA--TACACATT 547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33967519047 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5