BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53530.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923905 jgi|Araly1|923905|scaffold_105186.1 843 0.0
> Ahg923905 jgi|Araly1|923905|scaffold_105186.1
Length=547
Score = 843 bits (456), Expect = 0.0
Identities = 511/538 (95%), Gaps = 2/538 (0%)
Strand=Plus/Plus
Query 95 gagagagagaTGAGAATGACATTTTTGAGTTATCTGAAGCAATGGCGTGGAACAGCGAAA 154
|||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct 12 GAGAGAGAGATGAGTATGAGATTGTTGAGTTTTCTGAAGCAATGGCGTGGAACAGCGAAA 71
Query 155 GAAGCATTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACCGAT 214
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 72 GAAGCGTTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACTGAT 131
Query 215 CGATACATAATCTCCACGACCCACGTTCACGGGCCGAGCATGCTTCCGACGCTTAATCTA 274
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 132 CGTTACATAATCTCCACGACTCACGTTCACGGACCGAGCATGCTTCCGACGCTTAATCTA 191
Query 275 ACCGGCGATGTAATATTGGCGGAACATTTATCACACCGGTTTGGTAAGATTGGACTCGGT 334
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 192 ACCGGCGATGTAATTTTGGCGGAACATTTATCACATCGGTTTGGTAAGATTGGGCTCGGT 251
Query 335 GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAAAAGGATGGTGACAAAGCGAATCTTG 394
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 252 GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAACAGGATGGTGACAAAGCGAATCTTG 311
Query 395 GGTTTAGAAGGCGATAGACTCACTTTTTCTGCTGACCCATTGGTCGGTGATGCTTCAGTG 454
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 312 GGTTTAGAAGGCGATAGACTCACTTTCTCTGCTGACCCATTGGTCGGTGATGCCTCGGTC 371
Query 455 AGCGTTTTGGTTCCGAAAGGTCATGTTTGGATTCAGGGAGATAACTTGTATGCTTCAACT 514
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 372 AGCGTTTTGGTTCCAAAAGGTCATGTTTGGATTCAGGGAGATAACTTATATGCTTCAACG 431
Query 515 GATTCACGTCATTTTGGGCCTGTACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTACGG 574
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 432 GATTCACGTCATTTTGGACCTATACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTTCGG 491
Query 575 GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATTATATACACATACACATT 632
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 492 GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATCAGATACA--TACACATT 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5