BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53530.1

Length=916
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923905 jgi|Araly1|923905|scaffold_105186.1                        843    0.0  


> Ahg923905 jgi|Araly1|923905|scaffold_105186.1
Length=547

 Score =  843 bits (456),  Expect = 0.0
 Identities = 511/538 (95%), Gaps = 2/538 (0%)
 Strand=Plus/Plus

Query  95   gagagagagaTGAGAATGACATTTTTGAGTTATCTGAAGCAATGGCGTGGAACAGCGAAA  154
            |||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct  12   GAGAGAGAGATGAGTATGAGATTGTTGAGTTTTCTGAAGCAATGGCGTGGAACAGCGAAA  71

Query  155  GAAGCATTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACCGAT  214
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  72   GAAGCGTTCGAGAATGTATCAATCGTCGCCAAGTTTCTCTGTTTGCTTCATGTCACTGAT  131

Query  215  CGATACATAATCTCCACGACCCACGTTCACGGGCCGAGCATGCTTCCGACGCTTAATCTA  274
            || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  132  CGTTACATAATCTCCACGACTCACGTTCACGGACCGAGCATGCTTCCGACGCTTAATCTA  191

Query  275  ACCGGCGATGTAATATTGGCGGAACATTTATCACACCGGTTTGGTAAGATTGGACTCGGT  334
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  192  ACCGGCGATGTAATTTTGGCGGAACATTTATCACATCGGTTTGGTAAGATTGGGCTCGGT  251

Query  335  GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAAAAGGATGGTGACAAAGCGAATCTTG  394
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  252  GACGTTGTATTGGTTCGATCTCCTAGAGACCCAAACAGGATGGTGACAAAGCGAATCTTG  311

Query  395  GGTTTAGAAGGCGATAGACTCACTTTTTCTGCTGACCCATTGGTCGGTGATGCTTCAGTG  454
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| || || 
Sbjct  312  GGTTTAGAAGGCGATAGACTCACTTTCTCTGCTGACCCATTGGTCGGTGATGCCTCGGTC  371

Query  455  AGCGTTTTGGTTCCGAAAGGTCATGTTTGGATTCAGGGAGATAACTTGTATGCTTCAACT  514
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  372  AGCGTTTTGGTTCCAAAAGGTCATGTTTGGATTCAGGGAGATAACTTATATGCTTCAACG  431

Query  515  GATTCACGTCATTTTGGGCCTGTACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTACGG  574
            ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct  432  GATTCACGTCATTTTGGACCTATACCTTACAGTCTCATTGAAGGAAAAGCTCTTCTTCGG  491

Query  575  GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATTATATACACATACACATT  632
            |||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||
Sbjct  492  GTCTGGCCACCAGAATACTTTGGGTCATTGAGATGACGATCAGATACA--TACACATT  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33967519047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5