BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53550.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg337517 jgi|Araly1|337517|fgenesh1_pg.C_scaffold_1004082 813 0.0 Ahg923911 jgi|Araly1|923911|scaffold_105192.1 691 0.0 Ahg922827 jgi|Araly1|922827|scaffold_104108.1 163 3e-39 Ahg936029 jgi|Araly1|936029|scaffold_500220.1 89.8 4e-17 Ahg936026 jgi|Araly1|936026|scaffold_500217.1 89.8 4e-17 Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 67.6 2e-10 > Ahg337517 jgi|Araly1|337517|fgenesh1_pg.C_scaffold_1004082 Length=918 Score = 813 bits (440), Expect = 0.0 Identities = 628/717 (88%), Gaps = 19/717 (3%) Strand=Plus/Plus Query 1 ATGAGAAAACGTAAGCAGCAAGTTTACAACGATAACCTTATCGTATCCAGATCCAATAAA 60 ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| Sbjct 1 ATGAGAAAACGTAAGCAGCAAGTTTACAAGGATAACCTAATCGTAGCCAGATCCAATAAA 60 Query 61 CGATCTTCAACATCTGGAAAGGAAACGTGCTACTTTGATCCGATTCCCGTTGATCTCGTC 120 |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| || Sbjct 61 CGATCTTCAACATCTGGAGAGGAAACATGTTACTTTGATCCGATTCCCGTTGATCTCATC 120 Query 121 ATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATAGCAAGGTGTCGTTGTGTATCGAAA 180 ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||| Sbjct 121 ATCAATATCTTGTCGAGATTGCCTCTGGAGTGTATTGCGAGGTGTCGTTGTGTATCCAAA 180 Query 181 CTGTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTTGTTCCCGGTCAAGTCTTCG 240 ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| || Sbjct 181 CTGTGGTCGTCCATAGTTCGCCGTCCAAATTACAACCTGTTGTTCCCGTTCAAGTCTCCG 240 Query 241 GCTACACCGCGTCTTCTTTTCGTC-TTCAAAGTTGCACG-AGAGTTGTTTTTCAACTCTT 298 ||||||||||| || ||||||| | ||||||||| || | ||||||||| |||||||||| Sbjct 241 GCTACACCGCGGCTCCTTTTCG-CGTTCAAAGTTTCA-GAAGAGTTGTTATTCAACTCTT 298 Query 299 CACCTCAGCATTTCAATCC--G-AATAACTCGTCTCTTGTCGCCACTTCTCTTCAGAAGA 355 ||||||||| | |||||| | | |||| ||||||||| ||||| |||||||||| || Sbjct 299 CACCTCAGCCTCACAATCCGTGTAGGAACTTGTCTCTTGTAGCCACCTCTCTTCAGAGGA 358 Query 356 CTTCTAGCACAAGA-TTCTCTCAA-TTATGTCGTCCTGTCCATGGACTGATATGTAGTCA 413 |||||||| ||| | |||| | || || ||||| |||||||| ||| || | ||| | || Sbjct 359 CTTCTAGCGCAA-ATTTCT-TTAAGTTTTGTCGCCCTGTCCACGGATTGGTCTGTCGCCA 416 Query 414 GCATATCGAAGAGAATTATTTATTTGCCTTGATTTCTAATCCCA-CGACAGGAGAGTATA 472 ||||||||| | || |||| | | || | |||| |||||||| | |||||||||| | Sbjct 417 ACATATCGAAAATAACTATTCAGTGGCGGTAATTTATAATCCCATC-ACAGGAGAGTCTT 475 Query 473 T-AGCCTTACCCAAACAGAGAATGGAGGAGATGAATTCAGAGACGATAATTGAAAAAGTA 531 | | | |||||||||| ||||||||||| |||||||||||||| || || || ||||||| Sbjct 476 TCA-CTTTACCCAAACTGAGAATGGAGGGGATGAATTCAGAGAGGAGAAATGGAAAAGTA 534 Query 532 AGATATTCTTTTGGGTATGATCCGATTGACAAACAATTCAAGGTATTGCGTATCACATGG 591 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 535 AGATATTCTTTTGGGTATGATCCGATCGAAAAACAATTCAAGGTATTGCGTATCACATGG 594 Query 592 TTGCATAGAGGCTCACACGAGTGGTCTAGTGAGTATCAAGTTCTGACATTAGGGTTTGGA 651 |||| ||| |||||||||||| |||||||||||||||||||||| || |||||||||||| Sbjct 595 TTGCGTAGCGGCTCACACGAGCGGTCTAGTGAGTATCAAGTTCTAACGTTAGGGTTTGGA 654 Query 652 AAT-ATTTCATGGAGAAATACTC-AATGTTGCGTAGTTCATTATCTACTTGAAGATA 706 ||| ||| |||||||||| | || ||||| || |||||||||||| ||| ||||||| Sbjct 655 AATCATT-CATGGAGAAAGA-TCCAATGTCGCATAGTTCATTATCCACTAGAAGATA 709 > Ahg923911 jgi|Araly1|923911|scaffold_105192.1 Length=1160 Score = 691 bits (374), Expect = 0.0 Identities = 623/734 (85%), Gaps = 53/734 (7%) Strand=Plus/Plus Query 503 TGAATTCAGAGACGATAATTGAAAAAGTAAGATATTCTTTTGGGTATGATCCGATTGACA 562 ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |||| Sbjct 448 TGAATTCAGAGACGAGAATTGGAAAAGTAAGTTATTCTTTTGGGTATGATCCGATCGACA 507 Query 563 AACAATTCAAGGTATTGCGTATCACATGGTTGCATAGAGG-CTCACACG-AGTGGTCTAG 620 ||||||||||||||||||||||||||| ||||| ||| || |||||| | ||||| ||| Sbjct 508 AACAATTCAAGGTATTGCGTATCACATTGTTGCCTAG-GGACTCACA-GTGGTGGTATAG 565 Query 621 TGAGTATCAAGTTCTGACATTAGGGTTTGGAAATATTTCATGGAGAAATACT-CAATGTT 679 ||||||||||||||||||||||||| |||||||| ||||||||||||| | | ||||||| Sbjct 566 TGAGTATCAAGTTCTGACATTAGGGCTTGGAAATCTTTCATGGAGAAAGA-TCCAATGTT 624 Query 680 GCGTAGTTCATTATCTACTTGAAGA-TAGTGGTATATGCATCAATGGTGTTTTGTATTAT 738 || | ||||||| | || ||||| || ||||||||||||||||||||||||||||||| Sbjct 625 GCACACCTCATTATATTCTAGAAGATTA-TGGTATATGCATCAATGGTGTTTTGTATTAT 683 Query 739 CCAGCTAGGCTCGATAACAGAAAATATACCATTGTTTGCTTTGATGTTATGACTGAAAAA 798 || || ||||| ||| | |||||| |||||| ||||||||| |||||| | |||||||| Sbjct 684 CCCGCAAGGCTTAATACCGGAAAATCTACCATGGTTTGCTTTAATGTTAGGTCTGAAAAA 743 Query 799 TTCAGTTTTACT-AGTATTGATAAAGACATGACAATAATGACCAATCTCAGTT-TTAGTC 856 |||||||||||| | ||||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 744 TTCAGTTTTACTGA-TATTGATAAAGACGTGTCAATAGTGACCTATCTCT-TTGTTAGTG 801 Query 857 TCATCGACTACAAGGGTAAGTTAGGTGCTTGTATTTGTGATCACACTC--T--TTTTGAG 912 ||||||||||||| ||||||||||||| |||||||| |||||| ||| | ||||||| Sbjct 802 TCATCGACTACAATGGTAAGTTAGGTGTTTGTATTTCTGATCAT-CTCCATAATTTTGAG 860 Query 913 TTGTGGGTTTTAGAGAACGCGGAGGAACATAAATGGTCAAAGAATATCTACAACATGCCC 972 ||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| Sbjct 861 TTGTGGGTTTTAGAGAATGCGGAGGAACATAAATGGTCAAAGCATATCTACAAAATGCC- 919 Query 973 TATTCACGATCACGGCTGGAGGAAACGAGCTACTTAAAATGTGCTGGAATGATTGCAAGT 1032 | || | ||| | || | |||| ||||||||||||||||||||||| Sbjct 920 -A--CAT--T------TGG-G----CG---T-CTTAGAATGTGCTGGAATGATTGCAAGT 959 Query 1033 GGTGAAATTTTGTTGTACCCAATCTCTAGTGCTAACACAAGTACTGATGCAAGGTATCCT 1092 ||||||||| |||||||||||| | ||||||| || | | |||| |||||| Sbjct 960 GGTGAAATTGTGTTGTACCCAAGATTTAGTGCT--------TA-T-A--CAAGATATCCT 1007 Query 1093 TTCATCTACTACTACAATCTCGAGAGGAACATTATTACAAGAGTAACACTTCAAGTACCA 1152 ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1008 TTCCTCTACTTCTACAATCTGGAGAGGAACATTATTACAAGAGTAACACTTCAAGTTCCA 1067 Query 1153 ATACTTAAACAGTTTACTTATGCTAGATTATTTTACACATTTTCAAATTTTTTAGAGAAT 1212 |||| ||||||||| ||||||| |||||| || ||||||||||||||||| ||||| || Sbjct 1068 ATACGTAAACAGTTAACTTATGGTAGATT-TT--ACACATTTTCAAATTTTGTAGAGGAT 1124 Query 1213 GTGACGCTTATCTA 1226 |||||||||||||| Sbjct 1125 GTGACGCTTATCTA 1138 Score = 527 bits (285), Expect = 8e-149 Identities = 380/425 (89%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 1 ATGAGAAAACGTAAGCAGCAAGTTTA-CAACGATAACCTTATCGTATCCAGATCCAATAA 59 |||||||||| | ||||||||| | | | | ||| |||| | |||| || |||||||||| Sbjct 21 ATGAGAAAACATGAGCAGCAAG-TCATCGAGGATGACCTAACCGTAGCCGGATCCAATAA 79 Query 60 ACGATCTTCAACATCTGGA-AAGGAAACGTGCTACTTTGATCCGATTCCCGTTGATCTCG 118 ||||||||||||||||||| || ||||| || |||| |||||| |||||||||||||||| Sbjct 80 ACGATCTTCAACATCTGGAGAA-GAAACATGTTACTCTGATCCAATTCCCGTTGATCTCG 138 Query 119 TCATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATAGCAAGGTGTCGTTGTGTATCGA 178 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 139 TCATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATTGCAAGGTGTCGTTGTGTATCGA 198 Query 179 AACTGTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTTGTTCCCGGTCAAGTCTT 238 ||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| Sbjct 199 AACTGTGGTCGTCCATAATCCGCCGTCCAAATTACAACCTGTTGTTCCCGCTCAAGTCTC 258 Query 239 CGGCTACACCGCGTCTTCTTTTCGTCTTCAAAGTTGCACGAGAGTTGTTTTTCAACTCTT 298 ||||||||||||| ||||||||||||||||||||| || |||||||||| |||||| ||| Sbjct 259 CGGCTACACCGCGGCTTCTTTTCGTCTTCAAAGTTCCAGGAGAGTTGTTATTCAACGCTT 318 Query 299 CACCTCAGCATTTCAATCCGAATA---ACTCGTCTCTTGTCGCCACTTCTCTTCAGAAGA 355 |||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||| Sbjct 319 CACCTCAGCATTTCAATCCGGATAGGCACTCGTCTCTTGTAGCCACCTCTCTTCAGAAGA 378 Query 356 CTTCTAG---CACAAGATTCTCTCAATTATGTCGTCCTGTCCATGGACTGATATGTAGTC 412 || || | |||||| |||| |||||||||||| |||||||| |||||| ||||| ||| Sbjct 379 CTACTTGTAACACAAGTTTCTTTCAATTATGTCGCCCTGTCCACGGACTGGTATGTTGTC 438 Query 413 AGCAT 417 ||||| Sbjct 439 AGCAT 443 > Ahg922827 jgi|Araly1|922827|scaffold_104108.1 Length=331 Score = 163 bits (88), Expect = 3e-39 Identities = 139/163 (85%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 89 GCTACTTTGATCCGATTCCCGTTGATCTCGTCATCAATATCTTGTCGAGATTGTCTCTGG 148 ||| |||||||| |||| | |||||||||||||||||||||||||||| |||| | || Sbjct 62 GCT-CTTTGATCAGATTTCTGTTGATCTCGTCATCAATATCTTGTCGAAATTGCCGGTGA 120 Query 149 AGTGTATAGCA-AGGTGTCGTTGTGTATCGAAACTGTGGTCGTCCATAATTCGCCGTCCA 207 ||| |||||| || |||||||| |||||||| | ||||| ||||| |||||||||||| Sbjct 121 AGTCTATAGCTCAG-TGTCGTTGCGTATCGAAGCACTGGTCATCCATTATTCGCCGTCCA 179 Query 208 AATTACAACCA-GTTGTTCCCGGTCAAGTCTTCGGCTACACCG 249 ||||||||| | |||||||||| ||||||| ||||||||||| Sbjct 180 AATTACAAC-ATGTTGTTCCCGACCAAGTCTCCGGCTACACCG 221 > Ahg936029 jgi|Araly1|936029|scaffold_500220.1 Length=666 Score = 89.8 bits (48), Expect = 4e-17 Identities = 101/125 (81%), Gaps = 9/125 (7%) Strand=Plus/Plus Query 623 AGTATCAAGTTCTGACATTAGGGTTTGGAAATA-TTTCATGGAGAAAT-ACTCAATGTTG 680 |||| |||||| ||||| ||||| ||||||| | |||| ||||| ||| | | ||||||| Sbjct 123 AGTACCAAGTTATGACACTAGGGATTGGAAA-ACTTTCTTGGAG-AATGATTGAATGTTG 180 Query 681 CGTAGTTCATTATCTACTTGAAGATAG-TGGTATATGCATCAATGGTGTTTTGTATTATC 739 | || ||||||| ||| | || | ||| |||||||||||||||||||||||||||| Sbjct 181 CAAAGCGCATTATC--CTT-TATAT-GATGGGATATGCATCAATGGTGTTTTGTATTATC 236 Query 740 CAGCT 744 |||| Sbjct 237 GAGCT 241 > Ahg936026 jgi|Araly1|936026|scaffold_500217.1 Length=666 Score = 89.8 bits (48), Expect = 4e-17 Identities = 101/125 (81%), Gaps = 9/125 (7%) Strand=Plus/Plus Query 623 AGTATCAAGTTCTGACATTAGGGTTTGGAAATA-TTTCATGGAGAAAT-ACTCAATGTTG 680 |||| |||||| ||||| ||||| ||||||| | |||| ||||| ||| | | ||||||| Sbjct 123 AGTACCAAGTTATGACACTAGGGATTGGAAA-ACTTTCTTGGAG-AATGATTGAATGTTG 180 Query 681 CGTAGTTCATTATCTACTTGAAGATAG-TGGTATATGCATCAATGGTGTTTTGTATTATC 739 | || ||||||| ||| | || | ||| |||||||||||||||||||||||||||| Sbjct 181 CAAAGCGCATTATC--CTT-TATAT-GATGGGATATGCATCAATGGTGTTTTGTATTATC 236 Query 740 CAGCT 744 |||| Sbjct 237 GAGCT 241 > Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 Length=1179 Score = 67.6 bits (36), Expect = 2e-10 Identities = 99/127 (78%), Gaps = 13/127 (10%) Strand=Plus/Plus Query 622 GAGTATCAAGTTCTGACATTAGGGTTTGGA-AATATTTCATGGAGAAAT-ACTCAATGTT 679 ||| |||||||||||||| |||| |||| || | |||||||| ||| | | |||||| Sbjct 568 GAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAG-AATGATTGAATGTT 625 Query 680 GCGTAGTTCATTATCTACTTGAAGATAG--TG-GTATATGCATCAATGGTGTTTTGTATT 736 | || ||| ||| | | || ||| | || | ||||||||||||||||||||||||| Sbjct 626 CCATACCTCA-TAT-T-CCTG--GATTGTCTGAG-ATATGCATCAATGGTGTTTTGTATT 679 Query 737 ATCCAGC 743 ||||||| Sbjct 680 ATCCAGC 686 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5