BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53550.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337517 jgi|Araly1|337517|fgenesh1_pg.C_scaffold_1004082 813 0.0
Ahg923911 jgi|Araly1|923911|scaffold_105192.1 691 0.0
Ahg922827 jgi|Araly1|922827|scaffold_104108.1 163 3e-39
Ahg936029 jgi|Araly1|936029|scaffold_500220.1 89.8 4e-17
Ahg936026 jgi|Araly1|936026|scaffold_500217.1 89.8 4e-17
Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1 67.6 2e-10
> Ahg337517 jgi|Araly1|337517|fgenesh1_pg.C_scaffold_1004082
Length=918
Score = 813 bits (440), Expect = 0.0
Identities = 628/717 (88%), Gaps = 19/717 (3%)
Strand=Plus/Plus
Query 1 ATGAGAAAACGTAAGCAGCAAGTTTACAACGATAACCTTATCGTATCCAGATCCAATAAA 60
||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 1 ATGAGAAAACGTAAGCAGCAAGTTTACAAGGATAACCTAATCGTAGCCAGATCCAATAAA 60
Query 61 CGATCTTCAACATCTGGAAAGGAAACGTGCTACTTTGATCCGATTCCCGTTGATCTCGTC 120
|||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||
Sbjct 61 CGATCTTCAACATCTGGAGAGGAAACATGTTACTTTGATCCGATTCCCGTTGATCTCATC 120
Query 121 ATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATAGCAAGGTGTCGTTGTGTATCGAAA 180
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| |||
Sbjct 121 ATCAATATCTTGTCGAGATTGCCTCTGGAGTGTATTGCGAGGTGTCGTTGTGTATCCAAA 180
Query 181 CTGTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTTGTTCCCGGTCAAGTCTTCG 240
||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 181 CTGTGGTCGTCCATAGTTCGCCGTCCAAATTACAACCTGTTGTTCCCGTTCAAGTCTCCG 240
Query 241 GCTACACCGCGTCTTCTTTTCGTC-TTCAAAGTTGCACG-AGAGTTGTTTTTCAACTCTT 298
||||||||||| || ||||||| | ||||||||| || | ||||||||| ||||||||||
Sbjct 241 GCTACACCGCGGCTCCTTTTCG-CGTTCAAAGTTTCA-GAAGAGTTGTTATTCAACTCTT 298
Query 299 CACCTCAGCATTTCAATCC--G-AATAACTCGTCTCTTGTCGCCACTTCTCTTCAGAAGA 355
||||||||| | |||||| | | |||| ||||||||| ||||| |||||||||| ||
Sbjct 299 CACCTCAGCCTCACAATCCGTGTAGGAACTTGTCTCTTGTAGCCACCTCTCTTCAGAGGA 358
Query 356 CTTCTAGCACAAGA-TTCTCTCAA-TTATGTCGTCCTGTCCATGGACTGATATGTAGTCA 413
|||||||| ||| | |||| | || || ||||| |||||||| ||| || | ||| | ||
Sbjct 359 CTTCTAGCGCAA-ATTTCT-TTAAGTTTTGTCGCCCTGTCCACGGATTGGTCTGTCGCCA 416
Query 414 GCATATCGAAGAGAATTATTTATTTGCCTTGATTTCTAATCCCA-CGACAGGAGAGTATA 472
||||||||| | || |||| | | || | |||| |||||||| | |||||||||| |
Sbjct 417 ACATATCGAAAATAACTATTCAGTGGCGGTAATTTATAATCCCATC-ACAGGAGAGTCTT 475
Query 473 T-AGCCTTACCCAAACAGAGAATGGAGGAGATGAATTCAGAGACGATAATTGAAAAAGTA 531
| | | |||||||||| ||||||||||| |||||||||||||| || || || |||||||
Sbjct 476 TCA-CTTTACCCAAACTGAGAATGGAGGGGATGAATTCAGAGAGGAGAAATGGAAAAGTA 534
Query 532 AGATATTCTTTTGGGTATGATCCGATTGACAAACAATTCAAGGTATTGCGTATCACATGG 591
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 535 AGATATTCTTTTGGGTATGATCCGATCGAAAAACAATTCAAGGTATTGCGTATCACATGG 594
Query 592 TTGCATAGAGGCTCACACGAGTGGTCTAGTGAGTATCAAGTTCTGACATTAGGGTTTGGA 651
|||| ||| |||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 595 TTGCGTAGCGGCTCACACGAGCGGTCTAGTGAGTATCAAGTTCTAACGTTAGGGTTTGGA 654
Query 652 AAT-ATTTCATGGAGAAATACTC-AATGTTGCGTAGTTCATTATCTACTTGAAGATA 706
||| ||| |||||||||| | || ||||| || |||||||||||| ||| |||||||
Sbjct 655 AATCATT-CATGGAGAAAGA-TCCAATGTCGCATAGTTCATTATCCACTAGAAGATA 709
> Ahg923911 jgi|Araly1|923911|scaffold_105192.1
Length=1160
Score = 691 bits (374), Expect = 0.0
Identities = 623/734 (85%), Gaps = 53/734 (7%)
Strand=Plus/Plus
Query 503 TGAATTCAGAGACGATAATTGAAAAAGTAAGATATTCTTTTGGGTATGATCCGATTGACA 562
||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct 448 TGAATTCAGAGACGAGAATTGGAAAAGTAAGTTATTCTTTTGGGTATGATCCGATCGACA 507
Query 563 AACAATTCAAGGTATTGCGTATCACATGGTTGCATAGAGG-CTCACACG-AGTGGTCTAG 620
||||||||||||||||||||||||||| ||||| ||| || |||||| | ||||| |||
Sbjct 508 AACAATTCAAGGTATTGCGTATCACATTGTTGCCTAG-GGACTCACA-GTGGTGGTATAG 565
Query 621 TGAGTATCAAGTTCTGACATTAGGGTTTGGAAATATTTCATGGAGAAATACT-CAATGTT 679
||||||||||||||||||||||||| |||||||| ||||||||||||| | | |||||||
Sbjct 566 TGAGTATCAAGTTCTGACATTAGGGCTTGGAAATCTTTCATGGAGAAAGA-TCCAATGTT 624
Query 680 GCGTAGTTCATTATCTACTTGAAGA-TAGTGGTATATGCATCAATGGTGTTTTGTATTAT 738
|| | ||||||| | || ||||| || |||||||||||||||||||||||||||||||
Sbjct 625 GCACACCTCATTATATTCTAGAAGATTA-TGGTATATGCATCAATGGTGTTTTGTATTAT 683
Query 739 CCAGCTAGGCTCGATAACAGAAAATATACCATTGTTTGCTTTGATGTTATGACTGAAAAA 798
|| || ||||| ||| | |||||| |||||| ||||||||| |||||| | ||||||||
Sbjct 684 CCCGCAAGGCTTAATACCGGAAAATCTACCATGGTTTGCTTTAATGTTAGGTCTGAAAAA 743
Query 799 TTCAGTTTTACT-AGTATTGATAAAGACATGACAATAATGACCAATCTCAGTT-TTAGTC 856
|||||||||||| | ||||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 744 TTCAGTTTTACTGA-TATTGATAAAGACGTGTCAATAGTGACCTATCTCT-TTGTTAGTG 801
Query 857 TCATCGACTACAAGGGTAAGTTAGGTGCTTGTATTTGTGATCACACTC--T--TTTTGAG 912
||||||||||||| ||||||||||||| |||||||| |||||| ||| | |||||||
Sbjct 802 TCATCGACTACAATGGTAAGTTAGGTGTTTGTATTTCTGATCAT-CTCCATAATTTTGAG 860
Query 913 TTGTGGGTTTTAGAGAACGCGGAGGAACATAAATGGTCAAAGAATATCTACAACATGCCC 972
||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 861 TTGTGGGTTTTAGAGAATGCGGAGGAACATAAATGGTCAAAGCATATCTACAAAATGCC- 919
Query 973 TATTCACGATCACGGCTGGAGGAAACGAGCTACTTAAAATGTGCTGGAATGATTGCAAGT 1032
| || | ||| | || | |||| |||||||||||||||||||||||
Sbjct 920 -A--CAT--T------TGG-G----CG---T-CTTAGAATGTGCTGGAATGATTGCAAGT 959
Query 1033 GGTGAAATTTTGTTGTACCCAATCTCTAGTGCTAACACAAGTACTGATGCAAGGTATCCT 1092
||||||||| |||||||||||| | ||||||| || | | |||| ||||||
Sbjct 960 GGTGAAATTGTGTTGTACCCAAGATTTAGTGCT--------TA-T-A--CAAGATATCCT 1007
Query 1093 TTCATCTACTACTACAATCTCGAGAGGAACATTATTACAAGAGTAACACTTCAAGTACCA 1152
||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1008 TTCCTCTACTTCTACAATCTGGAGAGGAACATTATTACAAGAGTAACACTTCAAGTTCCA 1067
Query 1153 ATACTTAAACAGTTTACTTATGCTAGATTATTTTACACATTTTCAAATTTTTTAGAGAAT 1212
|||| ||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||
Sbjct 1068 ATACGTAAACAGTTAACTTATGGTAGATT-TT--ACACATTTTCAAATTTTGTAGAGGAT 1124
Query 1213 GTGACGCTTATCTA 1226
||||||||||||||
Sbjct 1125 GTGACGCTTATCTA 1138
Score = 527 bits (285), Expect = 8e-149
Identities = 380/425 (89%), Gaps = 10/425 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAAACGTAAGCAGCAAGTTTA-CAACGATAACCTTATCGTATCCAGATCCAATAA 59
|||||||||| | ||||||||| | | | | ||| |||| | |||| || ||||||||||
Sbjct 21 ATGAGAAAACATGAGCAGCAAG-TCATCGAGGATGACCTAACCGTAGCCGGATCCAATAA 79
Query 60 ACGATCTTCAACATCTGGA-AAGGAAACGTGCTACTTTGATCCGATTCCCGTTGATCTCG 118
||||||||||||||||||| || ||||| || |||| |||||| ||||||||||||||||
Sbjct 80 ACGATCTTCAACATCTGGAGAA-GAAACATGTTACTCTGATCCAATTCCCGTTGATCTCG 138
Query 119 TCATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATAGCAAGGTGTCGTTGTGTATCGA 178
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 139 TCATCAATATCTTGTCGAGATTGTCTCTGGAGTGTATTGCAAGGTGTCGTTGTGTATCGA 198
Query 179 AACTGTGGTCGTCCATAATTCGCCGTCCAAATTACAACCAGTTGTTCCCGGTCAAGTCTT 238
||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 199 AACTGTGGTCGTCCATAATCCGCCGTCCAAATTACAACCTGTTGTTCCCGCTCAAGTCTC 258
Query 239 CGGCTACACCGCGTCTTCTTTTCGTCTTCAAAGTTGCACGAGAGTTGTTTTTCAACTCTT 298
||||||||||||| ||||||||||||||||||||| || |||||||||| |||||| |||
Sbjct 259 CGGCTACACCGCGGCTTCTTTTCGTCTTCAAAGTTCCAGGAGAGTTGTTATTCAACGCTT 318
Query 299 CACCTCAGCATTTCAATCCGAATA---ACTCGTCTCTTGTCGCCACTTCTCTTCAGAAGA 355
|||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 319 CACCTCAGCATTTCAATCCGGATAGGCACTCGTCTCTTGTAGCCACCTCTCTTCAGAAGA 378
Query 356 CTTCTAG---CACAAGATTCTCTCAATTATGTCGTCCTGTCCATGGACTGATATGTAGTC 412
|| || | |||||| |||| |||||||||||| |||||||| |||||| ||||| |||
Sbjct 379 CTACTTGTAACACAAGTTTCTTTCAATTATGTCGCCCTGTCCACGGACTGGTATGTTGTC 438
Query 413 AGCAT 417
|||||
Sbjct 439 AGCAT 443
> Ahg922827 jgi|Araly1|922827|scaffold_104108.1
Length=331
Score = 163 bits (88), Expect = 3e-39
Identities = 139/163 (85%), Gaps = 5/163 (3%)
Strand=Plus/Plus
Query 89 GCTACTTTGATCCGATTCCCGTTGATCTCGTCATCAATATCTTGTCGAGATTGTCTCTGG 148
||| |||||||| |||| | |||||||||||||||||||||||||||| |||| | ||
Sbjct 62 GCT-CTTTGATCAGATTTCTGTTGATCTCGTCATCAATATCTTGTCGAAATTGCCGGTGA 120
Query 149 AGTGTATAGCA-AGGTGTCGTTGTGTATCGAAACTGTGGTCGTCCATAATTCGCCGTCCA 207
||| |||||| || |||||||| |||||||| | ||||| ||||| ||||||||||||
Sbjct 121 AGTCTATAGCTCAG-TGTCGTTGCGTATCGAAGCACTGGTCATCCATTATTCGCCGTCCA 179
Query 208 AATTACAACCA-GTTGTTCCCGGTCAAGTCTTCGGCTACACCG 249
||||||||| | |||||||||| ||||||| |||||||||||
Sbjct 180 AATTACAAC-ATGTTGTTCCCGACCAAGTCTCCGGCTACACCG 221
> Ahg936029 jgi|Araly1|936029|scaffold_500220.1
Length=666
Score = 89.8 bits (48), Expect = 4e-17
Identities = 101/125 (81%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 623 AGTATCAAGTTCTGACATTAGGGTTTGGAAATA-TTTCATGGAGAAAT-ACTCAATGTTG 680
|||| |||||| ||||| ||||| ||||||| | |||| ||||| ||| | | |||||||
Sbjct 123 AGTACCAAGTTATGACACTAGGGATTGGAAA-ACTTTCTTGGAG-AATGATTGAATGTTG 180
Query 681 CGTAGTTCATTATCTACTTGAAGATAG-TGGTATATGCATCAATGGTGTTTTGTATTATC 739
| || ||||||| ||| | || | ||| ||||||||||||||||||||||||||||
Sbjct 181 CAAAGCGCATTATC--CTT-TATAT-GATGGGATATGCATCAATGGTGTTTTGTATTATC 236
Query 740 CAGCT 744
||||
Sbjct 237 GAGCT 241
> Ahg936026 jgi|Araly1|936026|scaffold_500217.1
Length=666
Score = 89.8 bits (48), Expect = 4e-17
Identities = 101/125 (81%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 623 AGTATCAAGTTCTGACATTAGGGTTTGGAAATA-TTTCATGGAGAAAT-ACTCAATGTTG 680
|||| |||||| ||||| ||||| ||||||| | |||| ||||| ||| | | |||||||
Sbjct 123 AGTACCAAGTTATGACACTAGGGATTGGAAA-ACTTTCTTGGAG-AATGATTGAATGTTG 180
Query 681 CGTAGTTCATTATCTACTTGAAGATAG-TGGTATATGCATCAATGGTGTTTTGTATTATC 739
| || ||||||| ||| | || | ||| ||||||||||||||||||||||||||||
Sbjct 181 CAAAGCGCATTATC--CTT-TATAT-GATGGGATATGCATCAATGGTGTTTTGTATTATC 236
Query 740 CAGCT 744
||||
Sbjct 237 GAGCT 241
> Ahg496820 jgi|Araly1|496820|fgenesh2_kg.8__2636__AT5G65850.1
Length=1179
Score = 67.6 bits (36), Expect = 2e-10
Identities = 99/127 (78%), Gaps = 13/127 (10%)
Strand=Plus/Plus
Query 622 GAGTATCAAGTTCTGACATTAGGGTTTGGA-AATATTTCATGGAGAAAT-ACTCAATGTT 679
||| |||||||||||||| |||| |||| || | |||||||| ||| | | ||||||
Sbjct 568 GAGCATCAAGTTCTGACACTAGGAACTGGAGAA-CTGTCATGGAG-AATGATTGAATGTT 625
Query 680 GCGTAGTTCATTATCTACTTGAAGATAG--TG-GTATATGCATCAATGGTGTTTTGTATT 736
| || ||| ||| | | || ||| | || | |||||||||||||||||||||||||
Sbjct 626 CCATACCTCA-TAT-T-CCTG--GATTGTCTGAG-ATATGCATCAATGGTGTTTTGTATT 679
Query 737 ATCCAGC 743
|||||||
Sbjct 680 ATCCAGC 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5