BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53560.1

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474484 jgi|Araly1|474484|fgenesh2_kg.1__4438__AT1G53560.1         821    0.0  


> Ahg474484 jgi|Araly1|474484|fgenesh2_kg.1__4438__AT1G53560.1
Length=595

 Score =  821 bits (444),  Expect = 0.0
 Identities = 502/530 (95%), Gaps = 4/530 (1%)
 Strand=Plus/Plus

Query  5    agagatagagagagagaTAATGGGCAAAGAAAAAGACAAAAACAGAGGAGCTTCTCCTTC  64
            ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct  1    AGAGAGAGAGAGAGACATAATGGGAAAAGAAAAAGACAAAAACAGAGGAGCTTCTCCTCC  60

Query  65   ATCTTACGGCACGTTTCAAGGTGTCCCTACTTATCCTCCACCGTCCTATCCTCATCCTCC  124
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  61   ATCTTACGGCACGTTTCAAGGTGTCCCTACTTATCCTCCACCGTCGTATCCTCATCCTCC  120

Query  125  GTCGCATCATCCAGTCATCGGAATTCCTCAGCCGTCTCCACCTCCCGGATCACCTCATCA  184
            ||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||
Sbjct  121  GTCGCATCATCCAGTCATCAGATTTCCTCAGCCGTCTCCACCTCCCGGAACATCTCATCA  180

Query  185  CGACATTTCCGTTCATCAATACATTCAAGAACATCAAACCGTTGCTGGTTACCCTGTTTC  244
            | |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct  181  CAACATTTCCGTTCATCAATACATCCAAGAACATCAAACCGTTCCTGGTTACCCTGTTTC  240

Query  245  TCAAGGAAGACCTGCAAGACAAAACCGTCTTCCTTGTTGTGGTCTTGGCCTCGGTTGGTT  304
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TGAAGGAAGACCTGCAAGACAAAACCGTCTTCCTTGTTGTGGTCTTGGCCTCGGTTGGTT  300

Query  305  CTTGTTCATCATTGGTTTCCTCCTTGGTGCAATTCCATGGTATGTAGGCGTATTCATTCT  364
            ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||
Sbjct  301  CTTGTTCATCATTGGTTTCCTCCTTGGTGCAATCCCATGGTACATAGGCGTATTCATTCT  360

Query  365  AGTATGTGCTAGGATCGATCC-ACGAGAGAAACCAGGATACGTAGCTTGTACCATTGCAG  423
            ||||||||||||||||||| | | ||||||||||||||||| ||||||| ||||||||||
Sbjct  361  AGTATGTGCTAGGATCGATACGA-GAGAGAAACCAGGATACATAGCTTGCACCATTGCAG  419

Query  424  CTGTTGTTGCTACAATTACCATAGTTTTTGGTGTCATGGGAGGAAGAGGAGTTTGGTCGT  483
            ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||
Sbjct  420  CTGTTGTTGCTACAATTGCCATAGTTTTTGGTGTCATGGGAGGAAGAGGAGCCTGGTCGT  479

Query  484  GAAGTGTGCAAATAAATACATTGTTCATCAAGTATCTTGAACT-TGTATA  532
            ||||||||||||| || |||||||||||||||||||||||| | ||||||
Sbjct  480  GAAGTGTGCAAATTAAGACATTGTTCATCAAGTATCTTGAA-TGTGTATA  528


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 73/80 (91%), Gaps = 3/80 (4%)
 Strand=Plus/Plus

Query  556  AATGGGGATGATTTAAGTGTGGGAGTGCTTGTTGATTTAAGTGTGCAAATAAATACATTC  615
            |||| | || ||||||||||  | ||||||| ||||||||||||||||||||||||||||
Sbjct  519  AATGTGTAT-ATTTAAGTGT--GTGTGCTTGATGATTTAAGTGTGCAAATAAATACATTC  575

Query  616  TTCATCAAGTATCTTGAGCT  635
            ||||||||||||||||||||
Sbjct  576  TTCATCAAGTATCTTGAGCT  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5