BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53570.1
Length=2410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474488 jgi|Araly1|474488|fgenesh2_kg.1__4442__AT1G53570.2 3413 0.0
Ahg474980 jgi|Araly1|474980|fgenesh2_kg.2__110__AT1G63700.1 167 4e-40
> Ahg474488 jgi|Araly1|474488|fgenesh2_kg.1__4442__AT1G53570.2
Length=2278
Score = 3413 bits (1848), Expect = 0.0
Identities = 2168/2315 (94%), Gaps = 51/2315 (2%)
Strand=Plus/Plus
Query 76 GATGAAATCTTCATCTTTCGTATCTCTCCTCCTTCTCATGCCCTAAATTTCATCTCCTCT 135
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1 GATGAAATCTTCATCTTTCGTATCTCTCTTCCTTCTCATGCCCT-AATTTCATCTTCTCT 59
Query 136 CTTGT-ATTGATTCTGTTAAAAATCTCACCTTTCAATTCAAAACCCCTTCC--ATTTTTG 192
| ||| || |||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 60 C-TGTCATCGATTCTGTTAAAAATCTCACCTTTCAATTCAAAAATCCTTCCAGAGTTTTG 118
Query 193 TGATTAATATGCCTACTTGGTGGGGAAGAAAGTCCTGCAAGAACAAGGACGATAATCACA 252
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TG----ATATGCCTACTTGGTGGGGAAGAAAGTCCTGCAAGAACAAGGACGATAATCACA 174
Query 253 GAGGAATCATCTCCACAGATAGAGATATCAAGAGCTCTGCTGTTGTTGTTGATCCTCCTC 312
|||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 175 AAGGAATTATCTCCACAGATAGAGATATCAAGA-----GCTG-TGTTGTTGATCCTCCTC 228
Query 313 TCACTCCTACTCGTGGTGGTACACCTCGTTGCAGTCGTGAATTCGCTGGAGCTTCTTCTG 372
| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 229 TTACTCCTACTCGTGTTGGTACACCTCGTTGTAGTCGTGAATTCGCCGGAGCTTCTTCTG 288
Query 373 CTTTCTCTGGTTTTGACTCTGATTCTACCGAGAAGAAAGGTCACCCTCTTCCTCGTCCTT 432
| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 289 ------C----TTT--CTCTGATTCTACCGAGAAGAAAGGTCATCCTCTTCCTCGTCCTT 336
Query 433 TGCTCTCTCCTGTTTCGATCCATCATCAAGATCATGTAAGCGGATCCACTTCTGGATCTA 492
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TACTCTCTCCTGTTTCGATCCATCATCAAGATCATGTAAGCGGATCCACTTCTGGATCTA 396
Query 493 CATCTGTTTCTAGCGTTAGCTCATCTGGATCAGCTGATGATCAGAGTCAACTTGTTGCTT 552
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 397 CCTCTGTTTCTAGCGTTAGCTCTTCTGGATCAGCTGATGATCAGAGTCAACTTGTTGCTT 456
Query 553 CTAGGGGTCGTGGTGATGTGAAATTCAATGTAGCAGCAGCACCACGTAGTCCTGAGAGAG 612
||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 457 CTAGGGGTCATGGTGATGTGAAATTCAATGTAGCAGCAGCACCACGTAGCCCAGAGAGAG 516
Query 613 TTTCTCCAAAGGCAGCTACTATTACTACTAGGCCCACGTCTCCACGGCATCAGCGTTTGT 672
||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||| ||||
Sbjct 517 CTTCTCCAAAGGTAGCTACTGCTACTATTAGGCCCACGTCTCCACTGCATCAGCGATTGT 576
Query 673 CTGGAGTTGTGAGCTTAGAGTCTTCTACAGGGAGGAATGATGATGGAAGGTCCTCCTCTG 732
||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 577 CTGGAGTTGTGAGCTTAGAGTCTTCTATAGGGAGGAATGATGATGGAAGGTCTTCTTCTG 636
Query 733 AGTGTCATCCTTTGCCTCGACCACCTACTTCTCCTACAAGCCCTTCTGCTGTGCATGGTT 792
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AGTGTCACCCTTTGCCTCGACCACCTACTTCTCCTACAAGCCCTTCTGCTGTGCATGGTT 696
Query 793 CCAGGATTGGAGGAGGCTACGAG---ACCTCTCCTTCGGGGTTTTCCACGTGGAAAAAAG 849
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 697 CCTGGATTGGAGGAGGCTACGAGACAACCTCTCCTTCGGGGTTTTCCAAGTGGAAAAAAG 756
Query 850 GGAAATTTCTTGGGAGTGGCACCTTTGGTCAAGTCTATCTTGGTTTCAACAGTGAGAAAG 909
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 757 GGAAATTTCTTGGGAGTGGCACCTTTGGCCAAGTCTATCTTGGGTTCAACAGTGAGAAAG 816
Query 910 GGAAAATGTGTGCTATTAAAGAGGTCAAGGTCATTTCTGACGATCAAACATCAAAAGAAT 969
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 817 GAAAAATGTGTGCTATTAAAGAGGTGAAGGTCATTTCTGACGACCAAACGTCAAAAGAAT 876
Query 970 GTCTGAAGCAACTAAATCAGGAGATAAATTTGCTTAACCAGCTTTGTCATCCGAATATTG 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 877 GTCTGAAGCAACTAAATCAGGAGATAAATTTGCTTAACCAGCTTTGTCATCCGAATATCG 936
Query 1030 TCCAGTATTACGGAAGTGAACTGAGTGAAGAAACCTTGTCCGTCTACTTGGAGTACGTGT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 937 TCCAGTATTACGGAAGTGAACTGAGTGAAGAAACCTTGTCCGTCTACTTGGAGTATGTGT 996
Query 1090 CAGGTGGTTCAATCCATAAACTACTTAAGGATTATGGTTCTTTCACTGAACCCGTTATCC 1149
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 997 CAGGTGGTTCAATCCATAAACTACTTAAAGAATATGGTTCTTTCACTGAACCTGTTATCC 1056
Query 1150 AAAACTACACGCGGCAGATTCTTGCTGGGCTTGCCTATTTACATGGACGAAATACAGTAC 1209
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1057 AAAACTACACGCGGCAGATTCTCGCTGGGCTTGCCTATTTACATGGAAGAAATACAGTAC 1116
Query 1210 ATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGTGAAATCAAGTTGGCAG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 ATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGTGAAATCAAGTTGGCAG 1176
Query 1270 ACTTTGGGATGGCCAAACATGTAACAGCCTTTTCTACTATGCTTTCTTTTAAAGGGAGTC 1329
||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1177 ACTTTGGGATGGCCAGACATGTAGCAGCCTTTTCTACTATGCTTTCTTTCAAAGGGAGTC 1236
Query 1330 CTTACTGGATGGCACCCGAGGTTGTGATGAGCCAAAATGGCTACACTCATGCAGTCGATA 1389
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1237 CTTACTGGATGGCACCCGAGGTTGTGATGAGCCAAAATGGTTACACTCATGCAGTCGATA 1296
Query 1390 TCTGGAGTTTGGGTTGTACTATTCTGGAAATGGCAACATCAAAGCCACCTTGGAGCCAGT 1449
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1297 TCTGGAGTTTGGGTTGTACTATTCTCGAAATGGCAACATCAAAGCCACCTTGGAGCCAGT 1356
Query 1450 TTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGACACCCCGGAAATACCTG 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 TTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGACACCCCGGAAATACCTG 1416
Query 1510 ATCACCTTTCAAATGATGCAAAGAATTTTATAAGGCTTTGTCTGCAACGAAATCCGACAG 1569
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 ATCACCTTTCAAACGATGCAAAGAATTTTATAAGGCTTTGTCTGCAACGAAATCCGACAG 1476
Query 1570 TACGTCCTACAGCTTCTCAGCTTCTAGAACACCCTTTTCTACGTAACACAACAAGAGTGG 1629
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1477 TACGTCCTACAGCTTGTCAGCTTCTAGAACACCCTTTTCTACGTAATACAACAAGAGTGG 1536
Query 1630 CTAGTACTAGTTTGCCCAAAGACTTCC-CCCCACGTTCCTATGATGGAAACTTCTCACTG 1688
|||||||||| |||||||||| | || ||||||||||| ||||||||| ||||||||||
Sbjct 1537 CTAGTACTAGCATGCCCAAAGA-TACCTCCCCACGTTCCCATGATGGAAGCTTCTCACTG 1595
Query 1689 CAGCCTACAAGGGAACCCTATCCAGGGAGACTGAGCCATGATAATTATGCAAAACAGCCA 1748
| | ||||||||| |||||||||||||| | |||||||||||||| ||| ||| |||
Sbjct 1596 C--CA-ACAAGGGAATCCTATCCAGGGAGATTAAGCCATGATAATTACCCAAGACAACCA 1652
Query 1749 TTGTCTAGAACTATAAAGAGCCCGAGCAGAGAAAACGTAAGAGCTATCACATCCTTACCA 1808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1653 TTGTCTAGAACTATAAAGAGCCCGAGCAGAGAAAACGTAAGAGCTATCACATCCTTGCCA 1712
Query 1809 GTATCTCCATGTTCAAGCCCTTTACGCCAACTTGGGCCAGCATACAAAAGTTGTTTCCTG 1868
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1713 GTATCTCCATGTTCAAGCCCTTTACGCCAACTTGGGCCGGCATACAAAAGCTGTTTCCTG 1772
Query 1869 TCACCTCCTCACCCGTCTTACGCATTTCCTGGGCAAGACAGTGGGTACAACCTAGCAGAG 1928
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 1773 TCACCTCCTCACCCGTCTTACGCATTTCCTGGTCAAGACAGTGGGTACAACTTAGCGGAG 1832
Query 1929 TTTGCTGCAAGCCCTTTCAGGATGAAGAAAGACGCAATGATGGAACCATCTAGTTTCAGG 1988
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1833 TTTGCTGCAAGCCCTTTCAGGATGAAGAAAGACACAATGATGGAACCAGCTAGTTTCAGG 1892
Query 1989 ACTCAAACACCGAATTCACCATTGAGATCAAGACTGGTGTAGAAATGGAGCAAAGATTGA 2048
||||||| |||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1893 GGTCAAACATCGAATTTTCCCTTGAGATCAAGACTGGTATAGAAATGGAGCAAAGATTGA 1952
Query 2049 GAGACTGAAAGCCACATACTATAAACAAGGCCCAATGACCATGTATAAAACA--GTGTCT 2106
||||| ||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||
Sbjct 1953 GAGACCGAAAGCCACATACGATAAACAAGGCCCAAGGACCATGTACAAAACACAGTGTCT 2012
Query 2107 ACCCCTAGTTTTGGCCTTCTCCTTCTCAACACCCAGGGAAATATGAAGT--T-ATGAGAC 2163
||||| |||||||||||||||||||| |||||| |||||||||||||| | |||| ||
Sbjct 2013 -CCCCTGGTTTTGGCCTTCTCCTTCTCTACACCCTGGGAAATATGAAGTAATTATGATAC 2071
Query 2164 CTTAGTtgtgtgtgtgtgGAGCATCTCCTAGAAGTGGAGATTTTTGGAACAAGAAGGAGA 2223
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2072 CTTAGTTGTGTGTG-G---AGCATCTACTAGAAGTGGAGATTTTTGGAACAAGAAGGAGA 2127
Query 2224 AATTTGGGGGGAAAACAGAAAGATGTAAAGAGAAACATGAAAATGAATACAAAGTTTATA 2283
|||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2128 AATTTGGGGG-AAA-CAGAGAGATGTAAAGAGAAACATGAAAATGAATACAAAGATTATA 2185
Query 2284 GAGTGTGAGAAGTATA--GATAGTAAGTTGTGTTGTCACACAAAGATAATATTCAACCAT 2341
||||| ||||||| | |||||||||||||||||| | |||||||||||||||||||||
Sbjct 2186 GAGTG--AGAAGTACAAAGATAGTAAGTTGTGTTGTTATACAAAGATAATATTCAACCAT 2243
Query 2342 TTGTTTTCAACCTACAGTGTGAATATACTTTTCAG 2376
||||||||||||||| |||||||||||||||||||
Sbjct 2244 TTGTTTTCAACCTACCGTGTGAATATACTTTTCAG 2278
> Ahg474980 jgi|Araly1|474980|fgenesh2_kg.2__110__AT1G63700.1
Length=2979
Score = 167 bits (90), Expect = 4e-40
Identities = 354/478 (74%), Gaps = 32/478 (7%)
Strand=Plus/Plus
Query 1146 ATCCAAAACTACACGCGGCAGATTCTT-GCTGGGCTTGCCTATTTACATGGAC-GAAATA 1203
|||| ||||||||||| ||| ||| || | ||||| || ||||| || | | |||||
Sbjct 1556 ATCCGAAACTACACGCAGCAAATT-TTATCAGGGCTCGCATATTTGCA-CGCCAAAAATA 1613
Query 1204 CAGTACATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGT-GAAATCAA- 1261
| || ||||||||||||||||||||||||||||| |||||||| |||| || | ||
Sbjct 1614 CTGTTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCCCATGGACGAG-TAAAA 1672
Query 1262 GTTGGCAGACTTTGGGATGGCCAAACATGTAACAGC-CTTTTCTACTA-TGCTTTCTTTT 1319
|| ||| || ||||||||||| |||||| | || || | | || | | || || ||
Sbjct 1673 GT-GGCTGATTTTGGGATGGCAAAACATATTACTGCTCAAT-CTGGTCCT-CTATCATTC 1729
Query 1320 AAAGGGAGTCCTTACTGGATGGCACCCGAGGTTG-TGATGAGC-CAAAATGGC--TACAC 1375
|| ||||| || || ||||||||||| ||||| | | | || |||| |||| || ||
Sbjct 1730 AAGGGGAGCCCATATTGGATGGCACCTGAGGT-GATAAAGAATTCAAA-TGGCAGTA-AC 1786
Query 1376 TCATGCAGTCGATATCTGGAGT-TTGGGTTGTACTATTCTGGAAATGGCAACATCAAAGC 1434
| ||| || || || |||||| |||| | |||| |||| |||||||| ||| |||| |
Sbjct 1787 -CTTGCGGTTGACATATGGAGTCTTGGAT-GTACCGTTCTAGAAATGGCTACAACAAAAC 1844
Query 1435 CACCTTGGAGCCAGTTTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGA-C 1493
| || |||||||||| ||| |||||| |||| || ||||| || |||||||| || || |
Sbjct 1845 CTCCATGGAGCCAGTATGAGGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGC 1904
Query 1494 ACCCCGGAAATACCTGATCACCTT-TCA-AATGATGCAAAGAATTTTATAAGGCTTTGTC 1551
|| | | || |||||||| || || || || | ||| ||||| |||| || |
Sbjct 1905 TTCCAG-ATATTCCTGATCAT-TTATCTGAA-GAGGGGAAGGATTTTGTAAGAAAATGCC 1961
Query 1552 TGCA-ACGAAATCCGACAG-TACGTCCTACAGCTTCTCAGCTTCTAGAACACCCTTTT 1607
| || | |||| || || | |||||||||||| |||||||| | || ||| |||||
Sbjct 1962 TACAGA-GAAACCCTTCAAAT-CGTCCTACAGCTGCTCAGCTTTTGGATCACGCTTTT 2017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90807144080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5