BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G53570.1 Length=2410 Score E Sequences producing significant alignments: (Bits) Value Ahg474488 jgi|Araly1|474488|fgenesh2_kg.1__4442__AT1G53570.2 3413 0.0 Ahg474980 jgi|Araly1|474980|fgenesh2_kg.2__110__AT1G63700.1 167 4e-40 > Ahg474488 jgi|Araly1|474488|fgenesh2_kg.1__4442__AT1G53570.2 Length=2278 Score = 3413 bits (1848), Expect = 0.0 Identities = 2168/2315 (94%), Gaps = 51/2315 (2%) Strand=Plus/Plus Query 76 GATGAAATCTTCATCTTTCGTATCTCTCCTCCTTCTCATGCCCTAAATTTCATCTCCTCT 135 |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| Sbjct 1 GATGAAATCTTCATCTTTCGTATCTCTCTTCCTTCTCATGCCCT-AATTTCATCTTCTCT 59 Query 136 CTTGT-ATTGATTCTGTTAAAAATCTCACCTTTCAATTCAAAACCCCTTCC--ATTTTTG 192 | ||| || |||||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct 60 C-TGTCATCGATTCTGTTAAAAATCTCACCTTTCAATTCAAAAATCCTTCCAGAGTTTTG 118 Query 193 TGATTAATATGCCTACTTGGTGGGGAAGAAAGTCCTGCAAGAACAAGGACGATAATCACA 252 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TG----ATATGCCTACTTGGTGGGGAAGAAAGTCCTGCAAGAACAAGGACGATAATCACA 174 Query 253 GAGGAATCATCTCCACAGATAGAGATATCAAGAGCTCTGCTGTTGTTGTTGATCCTCCTC 312 |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 175 AAGGAATTATCTCCACAGATAGAGATATCAAGA-----GCTG-TGTTGTTGATCCTCCTC 228 Query 313 TCACTCCTACTCGTGGTGGTACACCTCGTTGCAGTCGTGAATTCGCTGGAGCTTCTTCTG 372 | ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 229 TTACTCCTACTCGTGTTGGTACACCTCGTTGTAGTCGTGAATTCGCCGGAGCTTCTTCTG 288 Query 373 CTTTCTCTGGTTTTGACTCTGATTCTACCGAGAAGAAAGGTCACCCTCTTCCTCGTCCTT 432 | ||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 289 ------C----TTT--CTCTGATTCTACCGAGAAGAAAGGTCATCCTCTTCCTCGTCCTT 336 Query 433 TGCTCTCTCCTGTTTCGATCCATCATCAAGATCATGTAAGCGGATCCACTTCTGGATCTA 492 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 TACTCTCTCCTGTTTCGATCCATCATCAAGATCATGTAAGCGGATCCACTTCTGGATCTA 396 Query 493 CATCTGTTTCTAGCGTTAGCTCATCTGGATCAGCTGATGATCAGAGTCAACTTGTTGCTT 552 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 397 CCTCTGTTTCTAGCGTTAGCTCTTCTGGATCAGCTGATGATCAGAGTCAACTTGTTGCTT 456 Query 553 CTAGGGGTCGTGGTGATGTGAAATTCAATGTAGCAGCAGCACCACGTAGTCCTGAGAGAG 612 ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 457 CTAGGGGTCATGGTGATGTGAAATTCAATGTAGCAGCAGCACCACGTAGCCCAGAGAGAG 516 Query 613 TTTCTCCAAAGGCAGCTACTATTACTACTAGGCCCACGTCTCCACGGCATCAGCGTTTGT 672 ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||| |||| Sbjct 517 CTTCTCCAAAGGTAGCTACTGCTACTATTAGGCCCACGTCTCCACTGCATCAGCGATTGT 576 Query 673 CTGGAGTTGTGAGCTTAGAGTCTTCTACAGGGAGGAATGATGATGGAAGGTCCTCCTCTG 732 ||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| Sbjct 577 CTGGAGTTGTGAGCTTAGAGTCTTCTATAGGGAGGAATGATGATGGAAGGTCTTCTTCTG 636 Query 733 AGTGTCATCCTTTGCCTCGACCACCTACTTCTCCTACAAGCCCTTCTGCTGTGCATGGTT 792 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 AGTGTCACCCTTTGCCTCGACCACCTACTTCTCCTACAAGCCCTTCTGCTGTGCATGGTT 696 Query 793 CCAGGATTGGAGGAGGCTACGAG---ACCTCTCCTTCGGGGTTTTCCACGTGGAAAAAAG 849 || |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 697 CCTGGATTGGAGGAGGCTACGAGACAACCTCTCCTTCGGGGTTTTCCAAGTGGAAAAAAG 756 Query 850 GGAAATTTCTTGGGAGTGGCACCTTTGGTCAAGTCTATCTTGGTTTCAACAGTGAGAAAG 909 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 757 GGAAATTTCTTGGGAGTGGCACCTTTGGCCAAGTCTATCTTGGGTTCAACAGTGAGAAAG 816 Query 910 GGAAAATGTGTGCTATTAAAGAGGTCAAGGTCATTTCTGACGATCAAACATCAAAAGAAT 969 | ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 817 GAAAAATGTGTGCTATTAAAGAGGTGAAGGTCATTTCTGACGACCAAACGTCAAAAGAAT 876 Query 970 GTCTGAAGCAACTAAATCAGGAGATAAATTTGCTTAACCAGCTTTGTCATCCGAATATTG 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 877 GTCTGAAGCAACTAAATCAGGAGATAAATTTGCTTAACCAGCTTTGTCATCCGAATATCG 936 Query 1030 TCCAGTATTACGGAAGTGAACTGAGTGAAGAAACCTTGTCCGTCTACTTGGAGTACGTGT 1089 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 937 TCCAGTATTACGGAAGTGAACTGAGTGAAGAAACCTTGTCCGTCTACTTGGAGTATGTGT 996 Query 1090 CAGGTGGTTCAATCCATAAACTACTTAAGGATTATGGTTCTTTCACTGAACCCGTTATCC 1149 |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct 997 CAGGTGGTTCAATCCATAAACTACTTAAAGAATATGGTTCTTTCACTGAACCTGTTATCC 1056 Query 1150 AAAACTACACGCGGCAGATTCTTGCTGGGCTTGCCTATTTACATGGACGAAATACAGTAC 1209 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1057 AAAACTACACGCGGCAGATTCTCGCTGGGCTTGCCTATTTACATGGAAGAAATACAGTAC 1116 Query 1210 ATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGTGAAATCAAGTTGGCAG 1269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 ATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGTGAAATCAAGTTGGCAG 1176 Query 1270 ACTTTGGGATGGCCAAACATGTAACAGCCTTTTCTACTATGCTTTCTTTTAAAGGGAGTC 1329 ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1177 ACTTTGGGATGGCCAGACATGTAGCAGCCTTTTCTACTATGCTTTCTTTCAAAGGGAGTC 1236 Query 1330 CTTACTGGATGGCACCCGAGGTTGTGATGAGCCAAAATGGCTACACTCATGCAGTCGATA 1389 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1237 CTTACTGGATGGCACCCGAGGTTGTGATGAGCCAAAATGGTTACACTCATGCAGTCGATA 1296 Query 1390 TCTGGAGTTTGGGTTGTACTATTCTGGAAATGGCAACATCAAAGCCACCTTGGAGCCAGT 1449 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1297 TCTGGAGTTTGGGTTGTACTATTCTCGAAATGGCAACATCAAAGCCACCTTGGAGCCAGT 1356 Query 1450 TTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGACACCCCGGAAATACCTG 1509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1357 TTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGACACCCCGGAAATACCTG 1416 Query 1510 ATCACCTTTCAAATGATGCAAAGAATTTTATAAGGCTTTGTCTGCAACGAAATCCGACAG 1569 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1417 ATCACCTTTCAAACGATGCAAAGAATTTTATAAGGCTTTGTCTGCAACGAAATCCGACAG 1476 Query 1570 TACGTCCTACAGCTTCTCAGCTTCTAGAACACCCTTTTCTACGTAACACAACAAGAGTGG 1629 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1477 TACGTCCTACAGCTTGTCAGCTTCTAGAACACCCTTTTCTACGTAATACAACAAGAGTGG 1536 Query 1630 CTAGTACTAGTTTGCCCAAAGACTTCC-CCCCACGTTCCTATGATGGAAACTTCTCACTG 1688 |||||||||| |||||||||| | || ||||||||||| ||||||||| |||||||||| Sbjct 1537 CTAGTACTAGCATGCCCAAAGA-TACCTCCCCACGTTCCCATGATGGAAGCTTCTCACTG 1595 Query 1689 CAGCCTACAAGGGAACCCTATCCAGGGAGACTGAGCCATGATAATTATGCAAAACAGCCA 1748 | | ||||||||| |||||||||||||| | |||||||||||||| ||| ||| ||| Sbjct 1596 C--CA-ACAAGGGAATCCTATCCAGGGAGATTAAGCCATGATAATTACCCAAGACAACCA 1652 Query 1749 TTGTCTAGAACTATAAAGAGCCCGAGCAGAGAAAACGTAAGAGCTATCACATCCTTACCA 1808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1653 TTGTCTAGAACTATAAAGAGCCCGAGCAGAGAAAACGTAAGAGCTATCACATCCTTGCCA 1712 Query 1809 GTATCTCCATGTTCAAGCCCTTTACGCCAACTTGGGCCAGCATACAAAAGTTGTTTCCTG 1868 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1713 GTATCTCCATGTTCAAGCCCTTTACGCCAACTTGGGCCGGCATACAAAAGCTGTTTCCTG 1772 Query 1869 TCACCTCCTCACCCGTCTTACGCATTTCCTGGGCAAGACAGTGGGTACAACCTAGCAGAG 1928 |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| Sbjct 1773 TCACCTCCTCACCCGTCTTACGCATTTCCTGGTCAAGACAGTGGGTACAACTTAGCGGAG 1832 Query 1929 TTTGCTGCAAGCCCTTTCAGGATGAAGAAAGACGCAATGATGGAACCATCTAGTTTCAGG 1988 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1833 TTTGCTGCAAGCCCTTTCAGGATGAAGAAAGACACAATGATGGAACCAGCTAGTTTCAGG 1892 Query 1989 ACTCAAACACCGAATTCACCATTGAGATCAAGACTGGTGTAGAAATGGAGCAAAGATTGA 2048 ||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 1893 GGTCAAACATCGAATTTTCCCTTGAGATCAAGACTGGTATAGAAATGGAGCAAAGATTGA 1952 Query 2049 GAGACTGAAAGCCACATACTATAAACAAGGCCCAATGACCATGTATAAAACA--GTGTCT 2106 ||||| ||||||||||||| ||||||||||||||| ||||||||| |||||| |||||| Sbjct 1953 GAGACCGAAAGCCACATACGATAAACAAGGCCCAAGGACCATGTACAAAACACAGTGTCT 2012 Query 2107 ACCCCTAGTTTTGGCCTTCTCCTTCTCAACACCCAGGGAAATATGAAGT--T-ATGAGAC 2163 ||||| |||||||||||||||||||| |||||| |||||||||||||| | |||| || Sbjct 2013 -CCCCTGGTTTTGGCCTTCTCCTTCTCTACACCCTGGGAAATATGAAGTAATTATGATAC 2071 Query 2164 CTTAGTtgtgtgtgtgtgGAGCATCTCCTAGAAGTGGAGATTTTTGGAACAAGAAGGAGA 2223 |||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| Sbjct 2072 CTTAGTTGTGTGTG-G---AGCATCTACTAGAAGTGGAGATTTTTGGAACAAGAAGGAGA 2127 Query 2224 AATTTGGGGGGAAAACAGAAAGATGTAAAGAGAAACATGAAAATGAATACAAAGTTTATA 2283 |||||||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 2128 AATTTGGGGG-AAA-CAGAGAGATGTAAAGAGAAACATGAAAATGAATACAAAGATTATA 2185 Query 2284 GAGTGTGAGAAGTATA--GATAGTAAGTTGTGTTGTCACACAAAGATAATATTCAACCAT 2341 ||||| ||||||| | |||||||||||||||||| | ||||||||||||||||||||| Sbjct 2186 GAGTG--AGAAGTACAAAGATAGTAAGTTGTGTTGTTATACAAAGATAATATTCAACCAT 2243 Query 2342 TTGTTTTCAACCTACAGTGTGAATATACTTTTCAG 2376 ||||||||||||||| ||||||||||||||||||| Sbjct 2244 TTGTTTTCAACCTACCGTGTGAATATACTTTTCAG 2278 > Ahg474980 jgi|Araly1|474980|fgenesh2_kg.2__110__AT1G63700.1 Length=2979 Score = 167 bits (90), Expect = 4e-40 Identities = 354/478 (74%), Gaps = 32/478 (7%) Strand=Plus/Plus Query 1146 ATCCAAAACTACACGCGGCAGATTCTT-GCTGGGCTTGCCTATTTACATGGAC-GAAATA 1203 |||| ||||||||||| ||| ||| || | ||||| || ||||| || | | ||||| Sbjct 1556 ATCCGAAACTACACGCAGCAAATT-TTATCAGGGCTCGCATATTTGCA-CGCCAAAAATA 1613 Query 1204 CAGTACATAGGGACATCAAAGGAGCAAATATATTAGTGGATCCGAATGGT-GAAATCAA- 1261 | || ||||||||||||||||||||||||||||| |||||||| |||| || | || Sbjct 1614 CTGTTCATAGGGACATCAAAGGAGCAAATATATTGGTGGATCCCCATGGACGAG-TAAAA 1672 Query 1262 GTTGGCAGACTTTGGGATGGCCAAACATGTAACAGC-CTTTTCTACTA-TGCTTTCTTTT 1319 || ||| || ||||||||||| |||||| | || || | | || | | || || || Sbjct 1673 GT-GGCTGATTTTGGGATGGCAAAACATATTACTGCTCAAT-CTGGTCCT-CTATCATTC 1729 Query 1320 AAAGGGAGTCCTTACTGGATGGCACCCGAGGTTG-TGATGAGC-CAAAATGGC--TACAC 1375 || ||||| || || ||||||||||| ||||| | | | || |||| |||| || || Sbjct 1730 AAGGGGAGCCCATATTGGATGGCACCTGAGGT-GATAAAGAATTCAAA-TGGCAGTA-AC 1786 Query 1376 TCATGCAGTCGATATCTGGAGT-TTGGGTTGTACTATTCTGGAAATGGCAACATCAAAGC 1434 | ||| || || || |||||| |||| | |||| |||| |||||||| ||| |||| | Sbjct 1787 -CTTGCGGTTGACATATGGAGTCTTGGAT-GTACCGTTCTAGAAATGGCTACAACAAAAC 1844 Query 1435 CACCTTGGAGCCAGTTTGAAGGGGTTGCTGCGATTTTCAAAATCGGAAACAGTAAAGA-C 1493 | || |||||||||| ||| |||||| |||| || ||||| || |||||||| || || | Sbjct 1845 CTCCATGGAGCCAGTATGAGGGGGTTCCTGCTATGTTCAAGATTGGAAACAGCAAGGAGC 1904 Query 1494 ACCCCGGAAATACCTGATCACCTT-TCA-AATGATGCAAAGAATTTTATAAGGCTTTGTC 1551 || | | || |||||||| || || || || | ||| ||||| |||| || | Sbjct 1905 TTCCAG-ATATTCCTGATCAT-TTATCTGAA-GAGGGGAAGGATTTTGTAAGAAAATGCC 1961 Query 1552 TGCA-ACGAAATCCGACAG-TACGTCCTACAGCTTCTCAGCTTCTAGAACACCCTTTT 1607 | || | |||| || || | |||||||||||| |||||||| | || ||| ||||| Sbjct 1962 TACAGA-GAAACCCTTCAAAT-CGTCCTACAGCTGCTCAGCTTTTGGATCACGCTTTT 2017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90807144080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5