BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53580.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914546 jgi|Araly1|914546|Al_scaffold_0001_4800 1216 0.0
> Ahg914546 jgi|Araly1|914546|Al_scaffold_0001_4800
Length=780
Score = 1216 bits (658), Expect = 0.0
Identities = 743/782 (95%), Gaps = 13/782 (2%)
Strand=Plus/Plus
Query 199 ATGGGttcgtcttcttctttctcct-ct--tcttcctcgaagcttctctttcgtcaactc 255
|||||||||||||| |||||||||| || || |||||||||||||||||||||||||||
Sbjct 1 ATGGGTTCGTCTTCATCTTTCTCCTCCTCCTCCTCCTCGAAGCTTCTCTTTCGTCAACTC 60
Query 256 ttTGAGAACGAATCTTCCACCTTTACTTATCTTCTCGCCGACGTTTCTCATCCTGATAAA 315
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGAGAAAGAATCTTCCACCTTTACTTATCTTCTCGCCGACGTTTCTCATCCTGATAAA 120
Query 316 CCTGCTTTGTTGATTGATCCGGTGGACAAGACTGTGGATAGAGACTTGAAACTGATTGAT 375
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 121 CCAGCTTTGTTAATTGATCCGGTGGACAAGACTGTGGATAGAGACTTGAAGCTGATAAAT 180
Query 376 GAGTTAGGAC-TAAAGCTTATCTATGCTATGAACACTCATGTTCATGCTGATCATGTCAC 434
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGTT-GGGCTTAAAGCTTATCTATGCTATGAACACTCATGTTCATGCTGATCATGTCAC 239
Query 435 TGGTACTGGACTTCTTAAGACGAAGCTCCCGGGTGTGAAATCCGTTATTTCGAAAGCAAG 494
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGAACTGGACTTCTTAAGACGAAGCTCCCGGGTGTGAAATCCGTTATTTCGAAAGCAAG 299
Query 495 TGGTTCCAAAGCTGATTTGTTTCTTGAACCTGGTGACAAAGTATCTATTGGTGATATATA 554
|||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 300 TGGTTCCAAAGCTGATATGTTTCTTGAACCCGGTGACAAAGTATCTATCGGCGATATATA 359
Query 555 CCTTGAGGTTCGTGCTACACCTGGACACACTGCAGGATGTGTTACATATGTGACTGGTGA 614
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 360 CCTCGAGGTTCGTGCTACACCTGGGCATACTGCAGGATGTGTTACATATGTGACTGGAGA 419
Query 615 AGGA-GCTGATCAGCCCCAACCAAGAATGGCTTTTACCGGGGATGCTGTACTCATCCGTG 673
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 A-GAGGCAGATCAGCCCCAACCAAGAATGGCTTTTACCGGGGATGCTGTACTCATCCGTG 478
Query 674 GTTGTGGGAGGACTGACTTTCAGGAAGGAAGCTCAGATCAACTCTACGAGTCTGTACATT 733
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 479 GTTGTGGGAGGACTGACTTTCAGGGTGGAAGCTCTGATCAACTCTACGAGTCTGTACATT 538
Query 734 --CA--C-AG-ATATTTACATTGCCAAAGGACACATTGATCTATCCTGCTCACGACTACA 787
|| | || ||||||||| ||||||||||||||||||||||||| |||||||| ||||
Sbjct 539 CACAGGCAAGTATATTTACACTGCCAAAGGACACATTGATCTATCCAGCTCACGATTACA 598
Query 788 AAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCTAACTAAAG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGGTTTCGAGGTAAGTACAGTTGGAGAAGAGATGCAACACAACCCGCGTCTAACTAAAG 658
Query 848 ATAAAGAAACATTCAAAACCATTATGTCAAATCTGAATCTGTCGTATCCGAAGATGATTG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATAAAGAAACATTCAAAACCATTATGTCAAATCTGAATCTGTCGTATCCGAAGATGATTG 718
Query 908 ATGTTGCAGTACCAGCAAATATGGTCTGTGGGTTACAAGATGTGCCTTCTCAAGCCAACT 967
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 ATGTTGCAGTACCAGCAAATATGGTATGTGGGTTACAAGATGTGCCTTCTCAAGCCAACT 778
Query 968 aa 969
||
Sbjct 779 AA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5