BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53610.1
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914549 jgi|Araly1|914549|Al_scaffold_0001_4803 405 8e-113
Ahg914550 jgi|Araly1|914550|Al_scaffold_0001_4804 202 1e-51
Ahg952398 jgi|Araly1|952398|scaffold_68000001.1 191 3e-48
Ahg337527 jgi|Araly1|337527|fgenesh1_pg.C_scaffold_1004092 165 2e-40
> Ahg914549 jgi|Araly1|914549|Al_scaffold_0001_4803
Length=273
Score = 405 bits (219), Expect = 8e-113
Identities = 265/285 (93%), Gaps = 12/285 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCGCGTTGATT 60
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||
Sbjct 1 ATGGAGCCTGTTGTTAATGTCATTATTGCAGTATCTGTCTGTGTTATTTTCGCATTGATT 60
Query 61 GTCATAGGCTGTGTCTCCTATAGGAAGAAAGAGCCTTTGTCTCAGCCACGAGATTTGGAA 120
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GTCATAGGCTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGAGATTTGGAA 120
Query 121 ACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATGATGCCACC 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 121 ACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGTAAATGACGCCAC- 179
Query 181 ACAGCTGTTGTAGCTGCAGCTGTGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTT 240
| | | |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 180 A-A-C------AGCTGC-G--GTGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTT 228
Query 241 GCGGCGGCTGTGGAGGTTAAGGGTTTCGTATATTGTGGGATTTGA 285
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 229 GCGGCGGCTGTGGAGGTTAAGGGTTTCGTATATTGTTGGATTTGA 273
> Ahg914550 jgi|Araly1|914550|Al_scaffold_0001_4804
Length=321
Score = 202 bits (109), Expect = 1e-51
Identities = 149/169 (88%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCGCGTTGATT 60
||||||||||||||||||||| | ||| | || |||||||| |||||||| ||||| |
Sbjct 1 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTTCGTGTTGACT 60
Query 61 GTCATAGGCTGTGTCTCCTATAGGAAGAAAGAGCCTTTGTCTCAGCCACGAGATTTGGAA 120
|||||| | ||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 61 GTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGGGATTTGGAA 120
Query 121 ACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAA 169
| ||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AAAGGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAA 169
> Ahg952398 jgi|Araly1|952398|scaffold_68000001.1
Length=289
Score = 191 bits (103), Expect = 3e-48
Identities = 148/170 (87%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCGCGTTGATT 60
||||||||||||||||||||| | ||| | || |||||||| |||||||| ||||| |
Sbjct 24 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTTCGTGTTGACT 83
Query 61 GTCATAGGCTGTGTCTCCTATAGGAAGAAAGAGCCTTTGTCTCAGCCACGAGATTTGGAA 120
|||||| | ||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 84 GTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGGGATTTGGAA 143
Query 121 ACGGGTGTAACGGGAACAAAAGATG-GAGGACTTGTTGTTTTGACAGGAA 169
| ||| || |||||| |||||||| ||||||||||||||||||| ||||
Sbjct 144 AAAGGTTTAGCGGGAATAAAAGATGCGAGGACTTGTTGTTTTGACCGGAA 193
> Ahg337527 jgi|Araly1|337527|fgenesh1_pg.C_scaffold_1004092
Length=834
Score = 165 bits (89), Expect = 2e-40
Identities = 172/211 (82%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 1 ATGGA-GCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCG-CGTTGA 58
||||| | || |||||| |||| ||||| ||||| ||||||| || |||| | | |||
Sbjct 1 ATGGATG-CTTTTGTTATTGTCATTATTATAGTATGTGCCTGTATTGTTTT-GCCATTGT 58
Query 59 TTGTCATAGGCTGTGT-CT--CCTATAGGAAGAAAGAGCC-T--TTGTCTCAGCCACGAG 112
|| || || ||||||| || || | | |||||| |||| | |||||||||| | ||
Sbjct 59 TTATCCTATGCTGTGTCCTCACCCACATAAAGAAAAAGCCATCAGTGTCTCAGCCGCCAG 118
Query 113 ATTTGGAAACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATG 172
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTTGGAAACGGGTAAAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAAATG 178
Query 173 ATGCCACCACAGCTGTTGTAGCTGCAGCTGT 203
||||||| ||| |||| ||| | || |||||
Sbjct 179 ATGCCACGACATCTGTCGTAACAGCGGCTGT 209
Score = 97.1 bits (52), Expect = 6e-20
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 186 TGTTGTAGCTGCAGCTG-TGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGG 244
|||||||| ||| | || ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 244 TGTTGTAGATGC-GATGATGGTGGTGGAGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGG 302
Query 245 CGGCTGTGGAG 255
|||||||||||
Sbjct 303 CGGCTGTGGAG 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9958608729
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5