BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53620.1
Length=497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914550 jgi|Araly1|914550|Al_scaffold_0001_4804 453 5e-127
Ahg952398 jgi|Araly1|952398|scaffold_68000001.1 425 1e-118
Ahg914549 jgi|Araly1|914549|Al_scaffold_0001_4803 202 2e-51
Ahg337527 jgi|Araly1|337527|fgenesh1_pg.C_scaffold_1004092 113 1e-24
> Ahg914550 jgi|Araly1|914550|Al_scaffold_0001_4804
Length=321
Score = 453 bits (245), Expect = 5e-127
Identities = 285/304 (94%), Gaps = 3/304 (1%)
Strand=Plus/Plus
Query 19 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTTCGTGTTGACT 78
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTTCGTGTTGACT 60
Query 79 GTCATATGCTGTATCTCCCATAGGAAGAAAGAGCCTTTGTTTCAGCCGCGGGATTTGGAA 138
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 GTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGGGATTTGGAA 120
Query 139 AACGGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACAGCTGTTGTT 198
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACAGCTGTTGTA 180
Query 199 GCTGCGGGTGTAACCACAGAACGTTCTGGCGGTTGCGGCGGTGGAGGAGATGGTGGCGGT 258
| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GGTGCGGCTGTAACCACAGCACGTTCTGGCGGTTGCGGTGGTGGAGGAGATGGTGGCGGT 240
Query 259 TGTGATGGTGATGCTGGTGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGA 318
||||| ||||||||||||||||||||||||| | | | |||| | ||||||| ||||||
Sbjct 241 TGTGAAGGTGATGCTGGTGGAGGAGATGGTG-CTG--GAGGAGATGGTGGCGGTTGTGGA 297
Query 319 GGTT 322
||||
Sbjct 298 GGTT 301
Score = 91.6 bits (49), Expect = 5e-18
Identities = 49/49 (100%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 276 TGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGAGGTTAA 324
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGAGGTTAA 321
> Ahg952398 jgi|Araly1|952398|scaffold_68000001.1
Length=289
Score = 425 bits (230), Expect = 1e-118
Identities = 262/277 (95%), Gaps = 3/277 (1%)
Strand=Plus/Plus
Query 9 AAAAGATATAATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTT 68
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 14 AAAAGGTATAATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTT 73
Query 69 CGTGTTGACTGTCATATGCTGTATCTCCCATAGGAAGAAAGAGCCTTTGTTTCAGCCGCG 128
|||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 74 CGTGTTGACTGTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCG 133
Query 129 GGATTTGGAAAACGGTTTAGCGGGAATAAAAGATG-GAGGACTTGTTGTTTTGACAGGAA 187
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 134 GGATTTGGAAAAAGGTTTAGCGGGAATAAAAGATGCGAGGACTTGTTGTTTTGACCGGAA 193
Query 188 CAGCTGTTGTTGCTGCGGGTGTAACCACAGAACGTTCTGGCGGTTGCGGCGGTGGAGGAG 247
|||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 CAGCTGTTGTAGGTGCGGCTGTAACCACAGCACGTTCTGGCGGTTGCGGCGGTGGAGGAG 253
Query 248 ATGGTGGCGGTTGTGATGGTGATGCTGGT-GGAGGAG 283
|||||||||||||||| |||||||||| | |||||||
Sbjct 254 ATGGTGGCGGTTGTGAAGGTGATGCTG-TCGGAGGAG 289
> Ahg914549 jgi|Araly1|914549|Al_scaffold_0001_4803
Length=273
Score = 202 bits (109), Expect = 2e-51
Identities = 148/167 (89%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 19 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTTCGTGTTGACT 78
||||||||||||||||||||||| ||| | || || |||||||||||||| |||| |
Sbjct 1 ATGGAGCCTGTTGTTAATGTCATTATTGCAGTATCTGTCTGTGTTATTTTCGCATTGATT 60
Query 79 GTCATATGCTGTATCTCCCATAGGAAGAAAGAGCCTTTGTTTCAGCCGCGGGATTTGGAA 138
|||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 61 GTCATAGGCTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGAGATTTGG-A 119
Query 139 AAC-GGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAG 184
||| ||| || |||||| |||||||||||||||||||||||||||||
Sbjct 120 AACGGGTGTAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAG 166
Score = 111 bits (60), Expect = 4e-24
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 265 GGTGATGCTGGTGGAGGAGATGGTGGCGGTTGTGGAGGTTGTGGCGGCTGTGGAGGTTAA 324
|||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 189 GGTGGTGATGGTGGAGGAGATGGCGGCGGTTGTGGAGGTTGCGGCGGCTGTGGAGGTTAA 248
Query 325 GGGTTTCGTATA 336
||||||||||||
Sbjct 249 GGGTTTCGTATA 260
> Ahg337527 jgi|Araly1|337527|fgenesh1_pg.C_scaffold_1004092
Length=834
Score = 113 bits (61), Expect = 1e-24
Identities = 243/325 (75%), Gaps = 36/325 (11%)
Strand=Plus/Plus
Query 19 ATGGA-GCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTTCG-TGTTGA 76
||||| | || |||||| |||||| |||||| || |||||||| || |||| | |||
Sbjct 1 ATGGATG-CTTTTGTTATTGTCATTATTATAGTATGTGCCTGTATTGTTTT-GCCATTGT 58
Query 77 CTGTCATATGCTGTAT-CT--CCCATAGGAAGAAAGAGCC-T--TTGTTTCAGCCGCGGG 130
| || |||||||| | || |||| | |||||| |||| | ||| |||||||| |
Sbjct 59 TTATCCTATGCTGTGTCCTCACCCACATAAAGAAAAAGCCATCAGTGTCTCAGCCGCCAG 118
Query 131 ATTTGGAAAAC-GGTTTAGCGGGAATAAAAGATGGAGGACTTGTTGTTTTGACAGGAACA 189
|||||| |||| ||| | |||||| |||||||||||||||||||||||||||||||| |
Sbjct 119 ATTTGG-AAACGGGTAAAACGGGAACAAAAGATGGAGGACTTGTTGTTTTGACAGGAA-A 176
Query 190 -GCTGTTGTTG-C-TGCGGGT-GTAACCA-CAGAACGT--TCTG-GCGGTTGC-GGCGGT 240
| || | | | | | | ||||| | | | || || || | | | ||||||
Sbjct 177 TGATGCCAC-GACAT-CTG-TCGTAAC-AGCGGCT-GTAATCACCGCAGATCCTGGCGGT 231
Query 241 GGAGGAGATGGTGGCGGTTGT-GATG-G-TGATGCTGGTGGAGGAG-A--TGGTGGCGGT 294
|| | || |||| | ||||| |||| | ||||| ||||||||||| | ||| ||||||
Sbjct 232 GG-G-AG-TGGTTGTTGTTGTAGATGCGATGATGGTGGTGGAGGAGGAGATGGCGGCGGT 288
Query 295 TGTGGAGGTTGTGGCGGCTGTGGAG 319
||||||||||| |||||||||||||
Sbjct 289 TGTGGAGGTTGCGGCGGCTGTGGAG 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18047593597
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5