BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53625.1

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474494 jgi|Araly1|474494|fgenesh2_kg.1__4448__AT1G53625.1         472    2e-132


> Ahg474494 jgi|Araly1|474494|fgenesh2_kg.1__4448__AT1G53625.1
Length=350

 Score =  472 bits (255),  Expect = 2e-132
 Identities = 321/350 (92%), Gaps = 15/350 (4%)
 Strand=Plus/Plus

Query  110  ATGTGTCGAATTTTATGTTGTTGCTTTTGCCGCaagaagaaaaagccgctagatgtgaaa  169
            ||||||||||| |||||||||||||| |||||||||||||||||||||  ||||||||||
Sbjct  1    ATGTGTCGAATGTTATGTTGTTGCTTCTGCCGCAAGAAGAAAAAGCCGAGAGATGTGAAA  60

Query  170  aagggtaaaaagggaaagaaagaTGGAGGCCTTGTTGTTTTGAAGCAGACTAAGCCTAAG  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAGGGTAAAAAGGGAAAGAAAGATGGAGGCCTTGTTGTTTTGAAGCAGACTAAGCCTAAG  120

Query  230  AAGAAGCGTCGTGATGATGTAGGAGCTGTATCAATAGACTCATGTTGCTGTTgtggcggt  289
            ||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||||
Sbjct  121  AAGAAGCGTCGCGATGATGTAGGAGCTATAGGAATAGACTCATGTTGCTGTTGTGGCGGT  180

Query  290  ggtgatggtggtggagatggtggcggagacggtggtggtgg---aggctgtgg---tggt  343
            |||||||| ||||||||||||||||||||||||||||| ||   ||| |||||   ||||
Sbjct  181  GGTGATGGCGGTGGAGATGGTGGCGGAGACGGTGGTGGCGGCGGAGGATGTGGAGGTGGT  240

Query  344  ggtgg-gg-g----atgtggtggtggtggtggAGGCGGTTAAAATATGAGGTTTCTGTAG  397
            ||||| || |    |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  241  GGTGGAGGCGGTGGATGTGGAGGTGGTGGTGGAGGCGGTTAAAATATGAGGTTGCTGTAG  300

Query  398  TTCA--A-CATATAATGATCATTTCTTGTGTGTCAtatgtttatttgttt  444
            ||||  | |||||||||||||||||||||||||| |||||||||||||||
Sbjct  301  TTCATCAACATATAATGATCATTTCTTGTGTGTCGTATGTTTATTTGTTT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18696238610


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5