BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53640.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314680 jgi|Araly1|314680|fgenesh1_pm.C_scaffold_1003460 529 2e-149
Ahg914555 jgi|Araly1|914555|Al_scaffold_0001_4809 167 1e-40
> Ahg314680 jgi|Araly1|314680|fgenesh1_pm.C_scaffold_1003460
Length=669
Score = 529 bits (286), Expect = 2e-149
Identities = 469/554 (85%), Gaps = 25/554 (5%)
Strand=Plus/Plus
Query 1 ATGAAATTCGATGATAAGTACAAACTTATTGTTGTAGGCATCAGCGGCGTTTTAGCGGGA 60
||||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||| |||
Sbjct 1 ATGAAATTCGATGATAACTACAAACTTATTGTTATAGTCATCGGCGGCGTTTTAGCTGGA 60
Query 61 GTTGTTGTCATAATGTTTATCTGTTGTTACAAGAACAAGAAGAAGAAGTTTCAGCTACCG 120
|||| |||| | |||||| || |||||||||||||||| |||||| |||||||||||
Sbjct 61 GTTGCTGTCGTTATGTTT-TC--CTGTTACAAGAACAAGAGGAAGAACCTTCAGCTACCG 117
Query 121 GAGCCGCCACAGACACCGGAGTGGCAGCGACAAATTGTTTCTGCTCCGACACTTCAGACA 180
|||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 GAGCTGACACAGACACCGGAGTGGCAGCGACAAATTGTTTCTGCTCCTACACTTCAGACA 177
Query 181 AGAAACATTGATGTCGGAAATGATCGCTTGTGGGGTAAAAGCGAAACCGTTGTGAAGAAA 240
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 178 AGAAACATTGATGTCGGAAATGATCGCTTGTGGGGTAGAAGCGACACCGTTGTGAATAAA 237
Query 241 TCTGTCATTCCACTGAGGCCAAACGCAGT-AGACAATACCTTGCGCTATCAGGGGCCTAA 299
||| | |||||||| | ||||||||| | | || ||| |||||| || ||| |||||||
Sbjct 238 TCTATTATTCCACTTAAGCCAAACGCTTTCA-ACGATAGCTTGCGATACCAGAGGCCTAA 296
Query 300 AAATTTGGAGAGGCCTCGGAGACAGAGAGATGATGTGACGCCTGCAGCTTCTACTTCAGC 359
||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||
Sbjct 297 AAATTTGGAGAGGCCTCGGGGACAGAGAGATGATGGGAC---TGCGGCTTCTACTTCAGC 353
Query 360 ATTTGCTGGTGATTGTGGTGGCAGTAGCGGTGGTGACAACGGTTGTGATGGTGGTCACAG 419
||||| ||||| ||||| || || ||||||||||||||||||||||| || | |||| ||
Sbjct 354 ATTTGGTGGTGGTTGTGTTGCCATTAGCGGTGGTGACAACGGTTGTGGTGCTAGTCATAG 413
Query 420 TGGCGGTGCTGTGACTGAGTTTTGCTA-TACGATCTCGATGGTTCGT-ATGTTTTGTGGA 477
||| |||| || || ||| || | | ||| | | |||| | | || | | |
Sbjct 414 TGGTGGTG--GTCAC--AGTGGTGGTGGTG-GATGTGG-TGGTGGGGGAGGTG--GAG-A 464
Query 478 ATCCTCAGCCGGAAGAATAAAAAGCCTTCGTCGTCTCCGTCTTCACCGTCGCGAGATATT 537
|| |||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 465 AT-----GCCGGAAGAAGAAAAAGCCTTCATCGTCTTCGTCTTCACCGTCGCGAGATATC 519
Query 538 AAAAAGG-TAAGAC 550
||||||| ||||||
Sbjct 520 AAAAAGGGTAAGAC 533
> Ahg914555 jgi|Araly1|914555|Al_scaffold_0001_4809
Length=255
Score = 167 bits (90), Expect = 1e-40
Identities = 123/139 (88%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 675 CAAGGAGGAGGAGGCGAAGTCATCTCCTCCAAAAGATAACGTCAAAAAAGGTGAAACGAC 734
||||||||||||| ||| |||||| ||||| | |||| | | ||||||||| || ||| |
Sbjct 30 CAAGGAGGAGGAGCCGATGTCATCACCTCCGAGAGATGATGCCAAAAAAGGAGAGACGGC 89
Query 735 GGGaaaaaaaGATGGAGGTCTTGTTGTT-GTGTCGTCTTCGGAAAAAAGTAAGACCAAAG 793
||||| ||||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 90 GGGAACAAAAGATGGAGGTCTTGTT-TTCATGTCGTCTTCGGGAAAAAGTAAGACCAAAG 148
Query 794 GCTGTTGTTGCGGCGGAgg 812
|||||||||||||||||||
Sbjct 149 GCTGTTGTTGCGGCGGAGG 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5