BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53645.1
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914558 jgi|Araly1|914558|Al_scaffold_0001_4812 2342 0.0
Ahg910776 jgi|Araly1|910776|Al_scaffold_0001_1030 174 2e-42
> Ahg914558 jgi|Araly1|914558|Al_scaffold_0001_4812
Length=2310
Score = 2342 bits (1268), Expect = 0.0
Identities = 1494/1598 (93%), Gaps = 36/1598 (2%)
Strand=Plus/Plus
Query 41 TCTCACAGATGAGAAGTGCTATAGGAAGAAGATTCTCAAACCCTAATGGCTTCACCATTG 100
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 731 TCTCACAGATGAGAAGTGCTTTAGGAAGAAGATTATCAAACCCTAATGGCTTCACTATTG 790
Query 101 CATCCTTAGTCAAACAAACTCCATTTCTCACCCAATCCACATCTCATTTCTCCTCTTCCT 160
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 791 CATCCATAGTCAAACAAACTCCATTTCTCATCCAATCCACATCTCATTTCTCCTCTTCCT 850
Query 161 CCGACTCCTCCGGCCGTGGTCGTGGACGCGGTTCCGGTGAAGATGGAGGATTTCCCGCCG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CCGACTCCTCCGGCCGTGGTCGTGGACGCGGTTCCGGTGAAGATGGAGGATTTCCCGCCG 910
Query 221 CTGGAAGAGGACAATTCGGTGTAAATCGTGAACCGGTGGTTCCTGGACGTGAACCGTCAT 280
||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 911 CTGGAAGGGGACAATTCGGTGTAAATCGTGAACCGGTGGCTCCCGGACGTGAACCGTCAT 970
Query 281 CTGCCGGAGGTTATGGTCATGGTCGTGGTCGTCCGATCCAATCTGATTCGATTTCTCCTG 340
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 971 CTGCTGGAGGTTATGGTCATGGTCGTGGTTGTCCGATCCAATCTGATTCGATTTCTCCTG 1030
Query 341 CGTTTACGTCATTTGTCAAATCAGATTCTCCTAGTATTGGCCGTGGAAGAGGATCCGTTG 400
||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1031 CGTTTTCGTCATTTGTCAAATCGGATTCTCCTAGCGTTGGCCGTGGAAGAGGATCCGTTG 1090
Query 401 GATCAGACACCGTTTCACCTTTCGCTGCTGAACCTCCTCGCCAATCGCCGCCTCCACCGC 460
||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 1091 GATCAGATTCCGTTTCACCTTTCGCTCCTGAACCTCCTCGCCAACCGCCGCCGCCACCGC 1150
Query 461 AGCAACAACAGTCTCAATCGCAGCAACAGCGTTCACAACCACAACAGCAGCAGCCGCGTT 520
|||||||||||||||| |||||||||| |||||||| ||||||||||| || |||||||
Sbjct 1151 AGCAACAACAGTCTCAGTCGCAGCAACCGCGTTCACCACCACAACAGC--CA-CCGCGTT 1207
Query 521 CGCAACCACAGCAGCAGCCTAATGATGAATCTCAGGGAAGTCCTGTATTTGTGAAGCTGC 580
|||| || ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 TGCAA--AC-GCAGC--CC-AATGATGAATCTCAGGGAAGTCCTGTATTTGTGAAGCTGC 1261
Query 581 AGGAGATGCAGGACGCAACTTCGTCTCCACCACCACCAGAGTCTAAACCTGGTCAAGCTG 640
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1262 AGGAGATGCAGGACGCAACTTCGTCTCCACCAACACCAGAGTCTAAATCTGGTCAAGCTG 1321
Query 641 ATCCACCTGATAACATATTCAATGCATTAGGAAACGAATTTTCACATCCTAGTGGAGCAG 700
||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 1322 ATCCACCTGATAACATATTCAATGCCTTAGGAAGTGAATTTTCACAACCTAGTGGAGCAG 1381
Query 701 GTCGAGGAAAGCCTCTTGTGGAATCTGCTCCAATCCGACAAGAAGATAACCGCCAAATTC 760
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1382 GTCGAGGAAAGCCTCTTGTGGAATCTGCTCCAATCCAACAAGAAGATAACCGCCAAATTC 1441
Query 761 GACG----C--CCTCCGCCT-C-CA-C--C-G---CAGCAGCAGAGAGTACAACCTCAGC 805
|||| | ||||||||| | || | | | ||||| || |||| |||||| ||||
Sbjct 1442 GACGCCCTCAGCCTCCGCCTCCGCAGCAGCAGCAACAGCAACAAAGAGCACAACCGCAGC 1501
Query 806 AGAAGCGGGCTCCAACGGTCAAAGATGGAA-CTCCTAAGCCGCAATTGAGT-GCGGAAGA 863
|||||||||||||||| ||||| || |||| |||||||||| ||||||||| | ||||||
Sbjct 1502 AGAAGCGGGCTCCAACTGTCAAGGA-GGAAGCTCCTAAGCCTCAATTGAGTAG-GGAAGA 1559
Query 864 GGCTGGAAGAAGAGCAAGGAGTGAGCTTTCGCGTGGTGAAGCTGAAGGAAGCAGTGTggg 923
||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |
Sbjct 1560 GGCTGGAAGAAGAGCAAGGAGCGAGCTTTCGCGTGGTGAAGCTGAAGGAGGTGGTGTAAG 1619
Query 924 aggaagaggagggagagggagagggagaggaagaggagcaagagggagaggcagaggaag 983
|||||||||||||||| | || |||||||||||||| ||||||||||| ||||||||
Sbjct 1620 AGGAAGAGGAGGGAGA--G-GA---AGAGGAAGAGGAGCGAGAGGGAGAGGTAGAGGAAG 1673
Query 984 aggtggtgatggatggagagatgataagaaagaagaagaaggTGAACAAGAGGCTATGCG 1043
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1674 AGGTGGTGACGGATGGAGAGATGATAAGAAAGAAGAAGAAGGTGAACAAGAGGCTATGAG 1733
Query 1044 TATATTTGCTGGAGATTCAGCTGATGGAGAGAAGTTTGCTGAGAAAATGGGACCTGAATT 1103
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1734 TATATTTGCTGGAGATTCAGCTGATGGAGAGAAGTTTGCTCAGAAAATGGGACCTGAATT 1793
Query 1104 GATGAAAACGCTT-GCGGAAGGTTTTGAGGAAATTTGCGAAAAGGCGTTGCCTTCTACTA 1162
|||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1794 GATGAAAACG-TTAGCAGAAGGTTTTGAGGAAGTTTGCGAAAAGGCGTTGCCTTCTACTA 1852
Query 1163 CTCACGATGCCATTATAGATGCTTATGATACCAATCTCATGATTGAGTGTGAGCCTGAAT 1222
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1853 CTCATGATGCCATTATAGATGCCTATGATACCAATCTCATGATTGAGTGTGAGCCAGAAT 1912
Query 1223 ACATTATGCCAGACTTTGGATCAAATCCTGACATTGATGAGAAACCACCAATGTCTCTGC 1282
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1913 ACATTATGCCGGACTTTGGATCGAATCCTGACATTGATGAGAAGCCACCAATGTCTCTGC 1972
Query 1283 GTGAGTGCCTTGAGAAGGTGAAGCCTTTCATAGTGGCTTACGAAGGAATCAAGGATCAAG 1342
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1973 GCGAGTGCCTTGAGAAGGTGAAGCCTTTCATAGTGGCTTACGAGGGAATCAAGGATCAAG 2032
Query 1343 AAGAATGGGAGGAAGCAATTAATGAAGCGATGACACAGGCTCCCCTTATGAAAGAGATTG 1402
|||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 2033 AAGAATGGGAGGAAGCGGTTAATGAAGCGATGGCGCAGGCTCCCCTTATGAAAGAGATTG 2092
Query 1403 TTGATCACTACAGTGGTCCTGATCGTGTAACTGCTAAGAAACAGAACGAGGAACTCGATA 1462
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2093 TTGATCACTACAGTGGTCCTGATCGAGTAACTGCTAAGAAACAGAACGAGGAACTCGATA 2152
Query 1463 GAATTGCTACAACGCTTCCCGCAAGTGCACCTGATTCCGTGAAACGATTTGCAGATCGTG 1522
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2153 GAATTGCTACAACGATTCCCGCAAGTGCACCTGATTCCGTGAAACGATTTGCAGATCGTG 2212
Query 1523 CAGCTCTTACTCTTAAGAGTAATCCAGGTTGGGGATTTGATAAGAAATACCAGTTCATGG 1582
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2213 CAGCTCTTACTCTTAAGAGTAATCCTGGTTGGGGATTTGACAAGAAATACCAGTTCATGG 2272
Query 1583 ACAAGCTCGTTTTAGAGGTGTCACAAAGCTACAAATAG 1620
|||||||||| || ||||||||||||||||||||||||
Sbjct 2273 ACAAGCTCGTATTGGAGGTGTCACAAAGCTACAAATAG 2310
> Ahg910776 jgi|Araly1|910776|Al_scaffold_0001_1030
Length=174
Score = 174 bits (94), Expect = 2e-42
Identities = 119/131 (91%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 825 CAAAGATGGAA-CTCCTAAGCCGCAATTGAGTGCGGAAGAGGCTGGAAGAAGAGCAAGGA 883
||| ||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 9 CAAGGAT-GAAGCTCCTAAGCCTCAATTGAGTATGGAAGAGGCTGGAAGAAGAGCAAGGA 67
Query 884 GTGAGCTTTCGCGTGGTGAAGCTGAAGGAAGCAGTGTgggaggaagaggagggagaggga 943
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 68 GCAAGCTTTCGCGTGGTGAAGCTGAAGGAAGTGGTGTGAGAGGAAGAGGAGGGAGAGGGA 127
Query 944 gagggagagga 954
|||| ||||||
Sbjct 128 GAGGAAGAGGA 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71647750845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5